Wall clock time and date at job start Wed Apr 1 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47130 * 300.00123 * 3 2 1 6 6 H 1.48494 * 109.46943 * 60.00232 * 3 2 1 7 7 C 1.37879 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99694 * 175.56297 * 7 2 1 9 9 C 1.50691 * 119.99963 * 355.83939 * 7 2 1 10 10 C 1.53006 * 115.55112 * 274.85494 * 9 7 2 11 11 N 1.46494 * 109.46926 * 302.71534 * 10 9 7 12 12 C 1.34784 * 119.99920 * 184.55412 * 11 10 9 13 13 O 1.21587 * 119.99508 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47025 * 185.23427 * 15 14 12 17 17 H 1.08999 * 109.47341 * 305.98607 * 16 15 14 18 18 C 1.50699 * 109.47106 * 65.98726 * 16 15 14 19 19 C 1.34513 * 125.79299 * 259.99539 * 18 16 15 20 20 C 1.41385 * 106.84454 * 180.02562 * 19 18 16 21 21 C 1.34515 * 106.83870 * 0.02562 * 20 19 18 22 22 O 1.34302 * 108.42254 * 359.73376 * 21 20 19 23 23 N 1.46907 * 109.47028 * 185.98373 * 16 15 14 24 24 C 1.48543 * 110.99489 * 59.44747 * 23 16 15 25 25 C 1.54933 * 103.22146 * 159.71897 * 24 23 16 26 26 C 1.54598 * 102.92769 * 322.58671 * 25 24 23 27 27 C 1.47902 * 110.99820 * 176.84003 * 23 16 15 28 28 C 1.52999 * 117.50013 * 129.19008 * 9 7 2 29 29 C 1.53002 * 117.50409 * 60.52748 * 9 7 2 30 30 H 0.97001 * 120.00367 * 5.00311 * 1 2 3 31 31 H 1.08997 * 109.46814 * 62.71553 * 10 9 7 32 32 H 1.08999 * 109.47310 * 182.71203 * 10 9 7 33 33 H 0.96999 * 120.00430 * 4.56053 * 11 10 9 34 34 H 0.97008 * 119.99551 * 0.02562 * 14 12 11 35 35 H 1.09002 * 109.47193 * 305.23484 * 15 14 12 36 36 H 1.08997 * 109.47156 * 65.23327 * 15 14 12 37 37 H 1.07999 * 126.57624 * 359.96919 * 19 18 16 38 38 H 1.07995 * 126.57659 * 179.97438 * 20 19 18 39 39 H 1.07999 * 125.78909 * 179.97438 * 21 20 19 40 40 H 1.08997 * 110.66351 * 278.15482 * 24 23 16 41 41 H 1.08995 * 110.66714 * 41.28509 * 24 23 16 42 42 H 1.09002 * 110.72498 * 204.22147 * 25 24 23 43 43 H 1.09005 * 110.87552 * 81.01816 * 25 24 23 44 44 H 1.08998 * 110.30489 * 263.04168 * 26 25 24 45 45 H 1.08995 * 110.30957 * 140.87721 * 26 25 24 46 46 H 1.08991 * 109.91863 * 333.51319 * 27 23 16 47 47 H 1.08997 * 109.91086 * 94.80870 * 27 23 16 48 48 H 1.09003 * 117.49921 * 359.97438 * 28 9 7 49 49 H 1.09003 * 117.49894 * 145.01860 * 28 9 7 50 50 H 1.08997 * 117.50297 * 214.98272 * 29 9 7 51 51 H 1.09004 * 117.49120 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0821 -1.1954 -0.0729 9 6 1.2540 -2.4974 0.0936 10 6 0.9108 -2.9604 1.5109 11 7 2.1408 -3.0767 2.2979 12 6 2.0932 -3.5593 3.5555 13 8 1.0291 -3.8977 4.0368 14 7 3.2249 -3.6668 4.2794 15 6 3.1731 -4.1919 5.6461 16 6 4.5593 -4.0878 6.2853 17 1 5.2926 -4.5774 5.6445 18 6 4.9278 -2.6361 6.4521 19 6 5.7359 -1.9312 5.6401 20 6 5.8042 -0.6209 6.1668 21 6 5.0342 -0.6036 7.2696 22 8 4.5014 -1.8254 7.4345 23 7 4.5428 -4.7430 7.6000 24 6 4.1697 -6.1755 7.4761 25 6 4.7041 -6.7959 8.7914 26 6 6.0305 -6.0349 9.0188 27 6 5.8871 -4.7283 8.2164 28 6 1.5778 -3.5755 -0.9427 29 6 0.2504 -2.8166 -1.0163 30 1 -0.4851 0.8368 -0.0733 31 1 0.2468 -2.2341 1.9796 32 1 0.4149 -3.9301 1.4663 33 1 2.9896 -2.8063 1.9141 34 1 4.0737 -3.3965 3.8955 35 1 2.4588 -3.6126 6.2311 36 1 2.8614 -5.2361 5.6226 37 1 6.2372 -2.2964 4.7559 38 1 6.3674 0.2069 5.7620 39 1 4.8689 0.2492 7.9112 40 1 3.0874 -6.2868 7.4101 41 1 4.6573 -6.6266 6.6120 42 1 4.8881 -7.8631 8.6676 43 1 4.0115 -6.6183 9.6141 44 1 6.8708 -6.6190 8.6437 45 1 6.1640 -5.8157 10.0781 46 1 6.6510 -4.6835 7.4403 47 1 5.9805 -3.8711 8.8831 48 1 2.3334 -3.3418 -1.6928 49 1 1.5458 -4.6145 -0.6148 50 1 -0.6542 -3.3566 -0.7369 51 1 0.1328 -2.0835 -1.8144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362329496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:33 Heat of formation + Delta-G solvation = 19.485140 kcal Electronic energy + Delta-G solvation = -31059.787296 eV Core-core repulsion = 26961.785455 eV Total energy + Delta-G solvation = -4098.001841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63102 -39.68449 -39.03434 -36.77881 -35.31393 -33.24937 -32.96756 -32.54529 -31.94557 -29.70810 -29.21775 -27.60524 -25.93969 -24.98936 -23.32682 -21.98458 -21.47286 -21.15782 -20.96658 -20.28933 -20.05582 -19.37775 -17.73743 -17.55367 -16.66873 -16.26291 -16.02261 -15.87785 -15.37308 -15.23369 -14.75371 -14.56647 -14.18079 -13.98458 -13.92280 -13.54070 -13.26747 -13.02371 -12.89373 -12.84101 -12.71150 -12.61437 -12.36502 -11.90852 -11.71041 -11.65344 -11.56966 -11.45804 -11.36319 -11.00561 -10.92397 -10.89102 -10.51356 -10.21139 -9.93575 -9.71971 -9.43407 -9.00940 -8.84436 -8.81458 -8.53638 -8.47708 -8.23257 -7.92019 -6.06541 -4.16385 1.68107 2.56819 2.87656 3.07557 3.24915 3.34129 3.35219 3.70831 3.83947 4.25644 4.29608 4.35409 4.50008 4.64222 4.74202 4.79532 4.91178 4.95028 4.99522 5.08326 5.17750 5.21883 5.32526 5.39922 5.46563 5.51558 5.58853 5.67212 5.73426 5.77459 5.80230 5.85350 5.90367 6.02174 6.06661 6.36539 6.37840 6.49164 6.51776 6.56633 6.60574 6.73570 6.76991 6.89339 7.14348 7.14651 7.36061 7.41446 7.47083 7.64346 7.81846 8.35433 8.69263 8.85221 9.23356 9.50913 11.00729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.002853 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.330524 B = 9812.201685 C =11435.626860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.183 3.817 11 N -0.718 5.718 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.752 5.752 15 C 0.150 3.850 16 C 0.149 3.851 17 H 0.077 0.923 18 C 0.002 3.998 19 C -0.208 4.208 20 C -0.211 4.211 21 C -0.042 4.042 22 O -0.156 6.156 23 N -0.505 5.505 24 C 0.029 3.971 25 C -0.122 4.122 26 C -0.131 4.131 27 C 0.039 3.961 28 C -0.211 4.211 29 C -0.143 4.143 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.397 0.603 34 H 0.392 0.608 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.200 0.800 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.475 -9.357 16.028 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.370 5.370 12 C 0.400 3.600 13 O -0.483 6.483 14 N -0.410 5.410 15 C 0.025 3.975 16 C 0.039 3.961 17 H 0.095 0.905 18 C -0.049 4.049 19 C -0.227 4.227 20 C -0.230 4.230 21 C -0.111 4.111 22 O -0.051 6.051 23 N -0.230 5.230 24 C -0.098 4.098 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.089 4.089 28 C -0.249 4.249 29 C -0.181 4.181 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.231 0.769 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.217 0.783 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.709 -9.337 17.064 23.235 hybrid contribution 1.948 1.212 -1.171 2.576 sum 14.657 -8.125 15.893 23.096 Atomic orbital electron populations 1.69995 1.05866 1.26727 1.48314 1.24982 0.94804 0.98920 0.94304 0.86594 0.80143 0.83970 0.77615 1.19737 1.21058 1.20966 1.20355 0.92528 0.88572 1.52227 0.92234 1.19046 0.99287 0.93297 0.85978 1.20803 0.83966 0.98079 0.91274 1.45109 1.12542 1.66955 1.12410 1.15958 0.83536 0.79012 0.81490 1.90872 1.28506 1.57241 1.71660 1.44955 1.09289 1.71794 1.14958 1.21016 0.94551 0.99924 0.82031 1.20517 0.97845 0.86578 0.91129 0.90500 1.21970 0.99681 0.92774 0.90471 1.21546 1.04181 0.94421 1.02591 1.21781 1.04857 0.98333 0.98039 1.24060 0.99144 0.86968 1.00887 1.84081 1.57363 1.19396 1.44274 1.64761 1.25467 1.13938 1.18814 1.23357 1.01994 0.87049 0.97396 1.22469 0.96756 0.99141 0.97657 1.22405 0.97981 0.95689 1.00821 1.22848 0.89195 0.98747 0.98063 1.23037 1.00577 0.95619 1.05619 1.22457 0.90856 1.01323 1.03446 0.92937 0.91850 0.94441 0.76862 0.77448 0.90298 0.91045 0.83650 0.83541 0.78310 0.89094 0.93192 0.90872 0.90480 0.91457 0.90896 0.93570 0.90160 0.90491 0.91738 0.91799 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.36 12.65 55.43 0.70 -23.65 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -12.82 8.21 -34.44 -0.28 -13.10 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.58 1.58 -155.66 -0.25 0.34 16 10 C 0.18 4.23 5.54 -4.04 -0.02 4.21 16 11 N -0.72 -14.45 5.43 -65.23 -0.35 -14.81 16 12 C 0.70 13.83 8.57 -86.92 -0.74 13.08 16 13 O -0.60 -14.22 16.34 5.29 0.09 -14.14 16 14 N -0.75 -11.21 5.33 -65.23 -0.35 -11.56 16 15 C 0.15 2.01 5.03 -4.04 -0.02 1.99 16 16 C 0.15 1.59 1.70 -68.86 -0.12 1.48 16 17 H 0.08 0.71 7.98 -51.93 -0.41 0.30 16 18 C 0.00 0.03 5.00 -35.63 -0.18 -0.15 16 19 C -0.21 -2.39 10.47 -39.70 -0.42 -2.80 16 20 C -0.21 -2.38 10.91 -39.70 -0.43 -2.82 16 21 C -0.04 -0.47 12.09 29.42 0.36 -0.12 16 22 O -0.16 -2.07 10.65 5.69 0.06 -2.01 16 23 N -0.50 -5.05 5.10 -223.88 -1.14 -6.19 16 24 C 0.03 0.25 5.39 -1.89 -0.01 0.23 16 25 C -0.12 -0.83 7.06 -24.87 -0.18 -1.01 16 26 C -0.13 -0.87 6.93 -25.37 -0.18 -1.05 16 27 C 0.04 0.34 5.94 -2.75 -0.02 0.32 16 28 C -0.21 -4.44 9.94 -26.69 -0.27 -4.71 16 29 C -0.14 -3.30 9.18 -26.69 -0.24 -3.54 16 30 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 31 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.40 7.37 8.07 -40.82 -0.33 7.04 16 34 H 0.39 4.92 8.05 -40.82 -0.33 4.59 16 35 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.07 0.92 6.62 -51.93 -0.34 0.58 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.09 0.80 7.52 -51.93 -0.39 0.41 16 41 H 0.05 0.39 8.00 -51.93 -0.42 -0.03 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.38 7.68 -51.93 -0.40 -0.02 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 51 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 417.21 15.07 6.29 6.29 Total: -1.00 -31.83 417.21 -11.32 -43.15 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -8.51 Total: 13.05 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.09 Total: -5.77 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.14 Total: -56.20 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.15 Total: -16.14 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.83 -11.32 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362329496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.640 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds