Wall clock time and date at job start Wed Apr 1 2020 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47130 * 300.00123 * 3 2 1 6 6 H 1.48494 * 109.46943 * 60.00232 * 3 2 1 7 7 C 1.37879 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99694 * 175.56297 * 7 2 1 9 9 C 1.50691 * 119.99963 * 355.83939 * 7 2 1 10 10 C 1.53006 * 115.55112 * 274.85494 * 9 7 2 11 11 N 1.46494 * 109.46926 * 302.71534 * 10 9 7 12 12 C 1.34784 * 119.99920 * 184.55412 * 11 10 9 13 13 O 1.21587 * 119.99508 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47025 * 185.23427 * 15 14 12 17 17 H 1.08999 * 109.47341 * 305.98607 * 16 15 14 18 18 C 1.50699 * 109.47106 * 65.98726 * 16 15 14 19 19 C 1.34513 * 125.79299 * 259.99539 * 18 16 15 20 20 C 1.41385 * 106.84454 * 180.02562 * 19 18 16 21 21 C 1.34515 * 106.83870 * 0.02562 * 20 19 18 22 22 O 1.34302 * 108.42254 * 359.73376 * 21 20 19 23 23 N 1.46907 * 109.47028 * 185.98373 * 16 15 14 24 24 C 1.48543 * 110.99489 * 59.44747 * 23 16 15 25 25 C 1.54933 * 103.22146 * 159.71897 * 24 23 16 26 26 C 1.54598 * 102.92769 * 322.58671 * 25 24 23 27 27 C 1.47902 * 110.99820 * 176.84003 * 23 16 15 28 28 C 1.52999 * 117.50013 * 129.19008 * 9 7 2 29 29 C 1.53002 * 117.50409 * 60.52748 * 9 7 2 30 30 H 0.97001 * 120.00367 * 5.00311 * 1 2 3 31 31 H 1.08997 * 109.46814 * 62.71553 * 10 9 7 32 32 H 1.08999 * 109.47310 * 182.71203 * 10 9 7 33 33 H 0.96999 * 120.00430 * 4.56053 * 11 10 9 34 34 H 0.97008 * 119.99551 * 0.02562 * 14 12 11 35 35 H 1.09002 * 109.47193 * 305.23484 * 15 14 12 36 36 H 1.08997 * 109.47156 * 65.23327 * 15 14 12 37 37 H 1.07999 * 126.57624 * 359.96919 * 19 18 16 38 38 H 1.07995 * 126.57659 * 179.97438 * 20 19 18 39 39 H 1.07999 * 125.78909 * 179.97438 * 21 20 19 40 40 H 1.08997 * 110.66351 * 278.15482 * 24 23 16 41 41 H 1.08995 * 110.66714 * 41.28509 * 24 23 16 42 42 H 1.09002 * 110.72498 * 204.22147 * 25 24 23 43 43 H 1.09005 * 110.87552 * 81.01816 * 25 24 23 44 44 H 1.08998 * 110.30489 * 263.04168 * 26 25 24 45 45 H 1.08995 * 110.30957 * 140.87721 * 26 25 24 46 46 H 1.08991 * 109.91863 * 333.51319 * 27 23 16 47 47 H 1.08997 * 109.91086 * 94.80870 * 27 23 16 48 48 H 1.09003 * 117.49921 * 359.97438 * 28 9 7 49 49 H 1.09003 * 117.49894 * 145.01860 * 28 9 7 50 50 H 1.08997 * 117.50297 * 214.98272 * 29 9 7 51 51 H 1.09004 * 117.49120 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0821 -1.1954 -0.0729 9 6 1.2540 -2.4974 0.0936 10 6 0.9108 -2.9604 1.5109 11 7 2.1408 -3.0767 2.2979 12 6 2.0932 -3.5593 3.5555 13 8 1.0291 -3.8977 4.0368 14 7 3.2249 -3.6668 4.2794 15 6 3.1731 -4.1919 5.6461 16 6 4.5593 -4.0878 6.2853 17 1 5.2926 -4.5774 5.6445 18 6 4.9278 -2.6361 6.4521 19 6 5.7359 -1.9312 5.6401 20 6 5.8042 -0.6209 6.1668 21 6 5.0342 -0.6036 7.2696 22 8 4.5014 -1.8254 7.4345 23 7 4.5428 -4.7430 7.6000 24 6 4.1697 -6.1755 7.4761 25 6 4.7041 -6.7959 8.7914 26 6 6.0305 -6.0349 9.0188 27 6 5.8871 -4.7283 8.2164 28 6 1.5778 -3.5755 -0.9427 29 6 0.2504 -2.8166 -1.0163 30 1 -0.4851 0.8368 -0.0733 31 1 0.2468 -2.2341 1.9796 32 1 0.4149 -3.9301 1.4663 33 1 2.9896 -2.8063 1.9141 34 1 4.0737 -3.3965 3.8955 35 1 2.4588 -3.6126 6.2311 36 1 2.8614 -5.2361 5.6226 37 1 6.2372 -2.2964 4.7559 38 1 6.3674 0.2069 5.7620 39 1 4.8689 0.2492 7.9112 40 1 3.0874 -6.2868 7.4101 41 1 4.6573 -6.6266 6.6120 42 1 4.8881 -7.8631 8.6676 43 1 4.0115 -6.6183 9.6141 44 1 6.8708 -6.6190 8.6437 45 1 6.1640 -5.8157 10.0781 46 1 6.6510 -4.6835 7.4403 47 1 5.9805 -3.8711 8.8831 48 1 2.3334 -3.3418 -1.6928 49 1 1.5458 -4.6145 -0.6148 50 1 -0.6542 -3.3566 -0.7369 51 1 0.1328 -2.0835 -1.8144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362329496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:32 Heat of formation + Delta-G solvation = -1.573256 kcal Electronic energy + Delta-G solvation = -31060.700456 eV Core-core repulsion = 26961.785455 eV Total energy + Delta-G solvation = -4098.915002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.51077 -41.03355 -40.00396 -38.54794 -36.46945 -34.96024 -33.98593 -33.88377 -33.52028 -30.45247 -29.95888 -28.79214 -27.69534 -26.68844 -24.30768 -22.92891 -22.82728 -22.21389 -21.85033 -21.57755 -21.23881 -20.94648 -19.26957 -18.40717 -18.13526 -17.47652 -17.07702 -16.79296 -16.66335 -16.48178 -16.45568 -15.83809 -15.66458 -15.32455 -14.99388 -14.69440 -14.55674 -14.39754 -13.96940 -13.77356 -13.68461 -13.62621 -13.49043 -13.44254 -13.09977 -12.91089 -12.86064 -12.59064 -12.40095 -12.32167 -12.18460 -12.00433 -11.99354 -11.48581 -11.42220 -11.25822 -10.92466 -10.81454 -10.44674 -10.32734 -10.02257 -9.60104 -9.52708 -9.40452 -8.08325 -6.22426 0.80414 1.40742 1.44708 1.53338 1.68848 1.71634 2.11789 2.23283 2.42534 2.82985 3.20019 3.36875 3.47597 3.62647 3.69795 3.71273 3.94609 3.98524 4.13460 4.16949 4.27085 4.28742 4.34035 4.50714 4.56896 4.63313 4.66020 4.68952 4.73947 4.76677 4.91127 4.93472 4.98185 4.98594 5.01727 5.05045 5.07345 5.17635 5.21120 5.30580 5.30882 5.41781 5.55091 5.57749 5.64713 5.73945 5.79498 5.83224 5.87091 6.10514 6.28466 6.38304 6.85642 7.20398 7.47430 7.65845 8.98916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.002853 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.330524 B = 9812.201685 C =11435.626860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.003 3.997 10 C 0.199 3.801 11 N -0.712 5.712 12 C 0.699 3.301 13 O -0.644 6.644 14 N -0.731 5.731 15 C 0.154 3.846 16 C 0.160 3.840 17 H 0.099 0.901 18 C -0.015 4.015 19 C -0.213 4.213 20 C -0.225 4.225 21 C -0.050 4.050 22 O -0.180 6.180 23 N -0.522 5.522 24 C 0.025 3.975 25 C -0.118 4.118 26 C -0.126 4.126 27 C 0.041 3.959 28 C -0.177 4.177 29 C -0.154 4.154 30 H 0.258 0.742 31 H 0.020 0.980 32 H 0.038 0.962 33 H 0.407 0.593 34 H 0.407 0.593 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.242 -10.244 16.143 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.002 3.998 10 C 0.074 3.926 11 N -0.366 5.366 12 C 0.398 3.602 13 O -0.527 6.527 14 N -0.388 5.388 15 C 0.030 3.970 16 C 0.051 3.949 17 H 0.117 0.883 18 C -0.066 4.066 19 C -0.232 4.232 20 C -0.244 4.244 21 C -0.118 4.118 22 O -0.075 6.075 23 N -0.247 5.247 24 C -0.102 4.102 25 C -0.156 4.156 26 C -0.164 4.164 27 C -0.087 4.087 28 C -0.214 4.214 29 C -0.192 4.192 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.243 0.757 34 H 0.243 0.757 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.555 -10.232 17.183 25.336 hybrid contribution 1.088 1.484 -1.161 2.176 sum 16.643 -8.748 16.022 24.702 Atomic orbital electron populations 1.70121 1.07283 1.27146 1.49970 1.25703 0.95447 1.02053 0.94456 0.85663 0.79717 0.80242 0.76959 1.18180 1.21057 1.21825 1.20673 0.92924 0.89378 1.50864 0.91621 1.19070 1.00213 0.94041 0.86436 1.20394 0.84461 0.96658 0.91083 1.44886 1.11975 1.67166 1.12546 1.16099 0.84055 0.78638 0.81384 1.90845 1.30493 1.58933 1.72425 1.44740 1.08516 1.70520 1.15037 1.21026 0.95926 0.99425 0.80672 1.20403 0.96199 0.86508 0.91834 0.88347 1.22251 1.00328 0.93305 0.90691 1.21872 1.03896 0.94511 1.02943 1.22110 1.05203 0.98879 0.98254 1.24708 0.98645 0.87010 1.01400 1.84068 1.58077 1.20321 1.45051 1.64717 1.26648 1.14944 1.18413 1.23418 1.01599 0.86369 0.98772 1.22463 0.96594 1.00060 0.96505 1.22399 0.98330 0.94747 1.00898 1.22836 0.88466 0.99313 0.98078 1.23022 0.98772 0.95936 1.03644 1.22382 0.92192 1.01816 1.02850 0.93315 0.96186 0.94367 0.75718 0.75662 0.93396 0.90411 0.81847 0.82006 0.75680 0.90119 0.92158 0.89150 0.91077 0.89990 0.90407 0.93079 0.91495 0.89615 0.89419 0.91314 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.59 12.65 21.45 0.27 -51.32 16 2 C 0.02 1.28 5.43 84.66 0.46 1.73 16 3 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.50 -25.32 8.21 25.60 0.21 -25.11 16 8 H 0.07 3.18 7.82 -2.91 -0.02 3.15 16 9 C 0.00 0.15 1.58 -52.93 -0.08 0.07 16 10 C 0.20 9.29 5.54 86.38 0.48 9.77 16 11 N -0.71 -28.26 5.43 -478.53 -2.60 -30.86 16 12 C 0.70 27.41 8.57 179.05 1.53 28.95 16 13 O -0.64 -30.89 16.34 -3.99 -0.07 -30.95 16 14 N -0.73 -21.02 5.33 -478.54 -2.55 -23.57 16 15 C 0.15 4.08 5.03 86.38 0.43 4.51 16 16 C 0.16 3.23 1.70 44.17 0.08 3.31 16 17 H 0.10 1.56 7.98 -2.39 -0.02 1.54 16 18 C -0.02 -0.35 5.00 24.83 0.12 -0.23 16 19 C -0.21 -4.52 10.47 22.19 0.23 -4.29 16 20 C -0.23 -4.75 10.91 22.19 0.24 -4.51 16 21 C -0.05 -1.07 12.09 66.97 0.81 -0.26 16 22 O -0.18 -4.69 10.65 -2.57 -0.03 -4.71 16 23 N -0.52 -9.93 5.10 -862.23 -4.39 -14.32 16 24 C 0.03 0.39 5.39 86.65 0.47 0.86 16 25 C -0.12 -1.40 7.06 31.80 0.22 -1.17 16 26 C -0.13 -1.41 6.93 31.47 0.22 -1.19 16 27 C 0.04 0.64 5.94 86.45 0.51 1.15 16 28 C -0.18 -7.05 9.94 30.62 0.30 -6.74 16 29 C -0.15 -7.09 9.18 30.62 0.28 -6.81 16 30 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.41 14.45 8.07 -92.71 -0.75 13.70 16 34 H 0.41 9.38 8.05 -92.70 -0.75 8.64 16 35 H 0.05 1.58 8.13 -2.39 -0.02 1.57 16 36 H 0.08 1.97 6.62 -2.39 -0.02 1.96 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.23 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.08 1.39 7.52 -2.39 -0.02 1.37 16 41 H 0.06 0.80 8.00 -2.39 -0.02 0.78 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 0.74 7.68 -2.39 -0.02 0.72 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 49 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 50 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 51 H 0.06 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -69.47 417.21 -1.37 -70.84 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.56 Total: 40.63 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.53 Total: 0.04 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -9.27 Total: -120.07 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.09 Total: -35.66 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.47 -1.37 -70.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362329496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.271 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds