Wall clock time and date at job start Wed Apr 1 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99846 * 3 2 1 5 5 H 1.48496 * 109.47213 * 29.99738 * 3 2 1 6 6 H 1.48503 * 109.47338 * 150.00044 * 3 2 1 7 7 C 1.37876 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99991 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00219 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47443 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00039 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99962 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99829 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47098 * 179.97438 * 16 15 13 18 18 C 1.38884 * 120.33727 * 269.97950 * 17 16 15 19 19 C 1.38298 * 118.50469 * 180.02562 * 18 17 16 20 20 C 1.39135 * 119.10048 * 0.02562 * 19 18 17 21 21 N 1.38994 * 119.70759 * 180.27416 * 20 19 18 22 22 C 1.47013 * 111.00116 * 303.35954 * 21 20 19 23 23 C 1.53099 * 109.25826 * 177.60813 * 22 21 20 24 24 O 1.43013 * 109.25982 * 56.84869 * 23 22 21 25 25 C 1.43021 * 113.73643 * 301.32716 * 24 23 22 26 26 C 1.47013 * 111.00021 * 179.72092 * 21 20 19 27 27 N 1.32404 * 120.58437 * 359.97438 * 20 19 18 28 28 C 1.31973 * 121.62499 * 0.02562 * 27 20 19 29 29 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46551 * 60.00114 * 9 7 2 31 31 H 1.08996 * 109.46938 * 300.00401 * 9 7 2 32 32 H 1.09000 * 109.47488 * 60.00396 * 10 9 7 33 33 H 1.08996 * 109.47238 * 299.99925 * 10 9 7 34 34 H 1.09004 * 109.47129 * 59.99594 * 11 10 9 35 35 H 1.09001 * 109.47261 * 300.00181 * 11 10 9 36 36 H 1.08997 * 109.46864 * 59.99501 * 12 11 10 37 37 H 1.09001 * 109.46958 * 300.00367 * 12 11 10 38 38 H 0.96998 * 120.00381 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47599 * 60.00185 * 16 15 13 40 40 H 1.09001 * 109.47372 * 299.99869 * 16 15 13 41 41 H 1.07998 * 120.74820 * 0.04079 * 18 17 16 42 42 H 1.08005 * 120.44849 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.50605 * 297.53718 * 22 21 20 44 44 H 1.08996 * 109.50808 * 57.67297 * 22 21 20 45 45 H 1.09002 * 109.50628 * 296.91379 * 23 22 21 46 46 H 1.09006 * 109.54434 * 176.80329 * 23 22 21 47 47 H 1.08996 * 109.51091 * 298.73835 * 25 24 23 48 48 H 1.09000 * 109.53987 * 178.62655 * 25 24 23 49 49 H 1.08992 * 109.51249 * 302.32880 * 26 21 20 50 50 H 1.09004 * 109.50478 * 62.42046 * 26 21 20 51 51 H 1.07998 * 119.57238 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0616 -4.0791 -0.0004 13 6 7.5685 -4.0791 0.0003 14 8 8.1749 -3.0288 0.0016 15 7 8.2424 -5.2463 -0.0005 16 6 9.7073 -5.2463 -0.0004 17 6 10.2097 -6.6672 -0.0008 18 6 10.4438 -7.3287 1.1977 19 6 10.9051 -8.6318 1.1531 20 6 11.1183 -9.2322 -0.0838 21 7 11.5762 -10.5432 -0.1434 22 6 12.8408 -10.6934 0.5912 23 6 13.2773 -12.1603 0.5505 24 8 13.3890 -12.5816 -0.8116 25 6 12.1752 -12.4496 -1.5565 26 6 11.7276 -10.9856 -1.5371 27 7 10.8831 -8.5678 -1.2047 28 6 10.4427 -7.3237 -1.1923 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 3.6579 -3.1506 -0.8897 33 1 3.6586 -3.1502 0.8903 34 1 5.9148 -2.1227 0.8901 35 1 5.9149 -2.1229 -0.8899 36 1 5.6982 -4.5926 -0.8905 37 1 5.6981 -4.5933 0.8894 38 1 7.7574 -6.0864 -0.0012 39 1 10.0707 -4.7332 0.8900 40 1 10.0708 -4.7319 -0.8900 41 1 10.2694 -6.8368 2.1432 42 1 11.0973 -9.1759 2.0661 43 1 13.6073 -10.0727 0.1270 44 1 12.6992 -10.3844 1.6268 45 1 12.5363 -12.7748 1.0619 46 1 14.2428 -12.2673 1.0449 47 1 11.4022 -13.0724 -1.1063 48 1 12.3431 -12.7653 -2.5861 49 1 10.7734 -10.8899 -2.0551 50 1 12.4757 -10.3690 -2.0355 51 1 10.2624 -6.8129 -2.1265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:03 Heat of formation + Delta-G solvation = -75.175859 kcal Electronic energy + Delta-G solvation = -28619.837235 eV Core-core repulsion = 24517.730585 eV Total energy + Delta-G solvation = -4102.106650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95861 -40.78395 -40.05080 -37.29120 -36.66172 -35.72427 -34.59252 -33.63969 -32.45305 -32.09473 -31.54348 -28.93267 -27.65807 -26.13122 -25.65005 -23.96385 -23.75017 -22.76224 -21.74165 -21.53821 -21.26994 -18.90264 -18.84593 -18.06744 -17.93637 -17.15073 -17.04215 -16.86212 -16.50938 -16.32365 -16.15616 -16.11326 -15.73589 -15.68789 -15.44122 -15.01261 -14.75255 -14.54954 -14.39811 -14.21008 -14.08753 -13.69741 -13.52004 -13.48919 -13.34296 -12.86519 -12.79795 -12.52369 -12.42720 -12.31998 -12.05574 -11.74740 -11.73815 -11.51134 -11.35780 -11.32911 -11.25141 -10.98031 -10.75554 -10.74730 -10.59442 -10.51769 -10.10415 -9.21307 -8.29196 -6.32336 -0.06605 0.24673 1.35446 1.36861 1.49740 1.67523 2.16092 2.33732 2.36552 2.81342 2.87020 3.06447 3.32755 3.62487 3.76803 3.85219 3.89092 3.91579 3.93977 4.04669 4.07120 4.08583 4.17753 4.19505 4.25621 4.45386 4.51638 4.59415 4.66711 4.67454 4.73376 4.74643 4.76667 4.80065 4.84869 4.88908 4.91646 4.93971 5.16692 5.20188 5.21648 5.28639 5.38464 5.43048 5.52266 5.62124 5.67129 5.69627 5.98707 6.09156 6.30189 6.54285 6.75800 6.89493 7.27103 7.32715 8.87473 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.001301 C = 0.001281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.597327 B =21519.574100 C =21854.624561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.132 4.132 13 C 0.515 3.485 14 O -0.584 6.584 15 N -0.717 5.717 16 C 0.173 3.827 17 C -0.180 4.180 18 C -0.031 4.031 19 C -0.184 4.184 20 C 0.299 3.701 21 N -0.481 5.481 22 C 0.022 3.978 23 C 0.061 3.939 24 O -0.404 6.404 25 C 0.062 3.938 26 C 0.035 3.965 27 N -0.541 5.541 28 C 0.139 3.861 29 H 0.266 0.734 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.044 0.956 44 H 0.115 0.885 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.090 0.910 50 H 0.045 0.955 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.300 -28.418 2.158 43.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.172 4.172 13 C 0.303 3.697 14 O -0.464 6.464 15 N -0.370 5.370 16 C 0.049 3.951 17 C -0.184 4.184 18 C -0.057 4.057 19 C -0.206 4.206 20 C 0.068 3.932 21 N -0.199 5.199 22 C -0.104 4.104 23 C -0.016 4.016 24 O -0.323 6.323 25 C -0.015 4.015 26 C -0.092 4.092 27 N -0.255 5.255 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.177 0.823 42 H 0.176 0.824 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.108 0.892 50 H 0.063 0.937 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 32.617 -28.450 1.508 43.308 hybrid contribution -0.474 1.575 0.301 1.672 sum 32.143 -26.874 1.809 41.937 Atomic orbital electron populations 1.70062 1.08159 1.28075 1.52903 1.25984 0.95586 1.03374 0.94230 0.85695 0.79414 0.78606 0.79176 1.19251 1.20719 1.17537 1.21566 0.92195 0.93214 1.50019 0.94529 1.19578 0.93826 0.95935 0.96115 1.21346 0.93898 0.96693 1.01296 1.21280 0.94655 0.95791 1.01836 1.21680 0.89937 0.99064 1.06496 1.21093 0.90999 0.83153 0.74417 1.90697 1.71393 1.33087 1.51221 1.46021 1.06824 1.08760 1.75360 1.19956 0.79948 0.92086 1.03102 1.20631 1.06084 0.97052 0.94639 1.21677 0.91915 0.93256 0.98854 1.21766 1.04685 0.96222 0.97906 1.20165 0.94505 0.88561 0.90012 1.59455 1.29031 1.15612 1.15838 1.23077 0.87450 0.99399 1.00450 1.22885 1.03775 0.91874 0.83046 1.87996 1.34661 1.85783 1.23851 1.22854 0.86730 0.93828 0.98091 1.22608 1.02552 0.96800 0.87281 1.67644 1.17180 1.09829 1.30852 1.22693 0.91834 0.88926 0.98448 0.92530 0.96733 0.96901 0.92535 0.92488 0.92907 0.92931 0.86766 0.86661 0.74959 0.90713 0.90991 0.82342 0.82388 0.93732 0.86641 0.91115 0.85840 0.91535 0.86623 0.89187 0.93708 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 2 C 0.00 0.29 5.47 84.65 0.46 0.76 16 3 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 7 C -0.53 -31.41 9.66 25.60 0.25 -31.17 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 10 C -0.09 -3.61 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.10 4.50 30.59 0.14 -2.96 16 12 C -0.13 -2.90 5.70 29.84 0.17 -2.73 16 13 C 0.52 12.06 7.83 87.65 0.69 12.75 16 14 O -0.58 -19.18 15.98 -3.02 -0.05 -19.22 16 15 N -0.72 -11.10 5.55 -466.79 -2.59 -13.69 16 16 C 0.17 2.49 5.82 85.63 0.50 2.99 16 17 C -0.18 -2.16 5.27 -19.76 -0.10 -2.26 16 18 C -0.03 -0.30 9.85 22.44 0.22 -0.08 16 19 C -0.18 -1.90 9.23 22.50 0.21 -1.69 16 20 C 0.30 4.32 6.40 133.06 0.85 5.17 16 21 N -0.48 -6.11 4.75 -700.90 -3.33 -9.44 16 22 C 0.02 0.19 5.40 86.31 0.47 0.65 16 23 C 0.06 0.45 7.01 72.02 0.50 0.95 16 24 O -0.40 -5.19 10.83 -148.98 -1.61 -6.80 16 25 C 0.06 0.63 7.01 72.02 0.50 1.14 16 26 C 0.03 0.46 4.82 86.32 0.42 0.87 16 27 N -0.54 -9.04 8.71 -193.27 -1.68 -10.72 16 28 C 0.14 1.94 10.85 84.62 0.92 2.86 16 29 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 31 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16 35 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 4.41 8.46 -92.71 -0.78 3.62 16 39 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 40 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.16 0.91 7.20 -2.91 -0.02 0.89 16 43 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.12 0.48 6.84 -2.39 -0.02 0.47 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 1.28 7.86 -2.39 -0.02 1.26 16 50 H 0.04 0.72 8.03 -2.38 -0.02 0.70 16 51 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -79.00 413.23 -0.54 -79.54 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.08 Total: 9.82 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 6.47 Total: -16.92 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -7.30 Total: -94.21 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.66 Total: -26.02 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -79.00 -0.54 -79.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.364 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds