Wall clock time and date at job start Wed Apr 1 2020 04:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 277.80289 * 3 2 1 5 5 N 1.46899 * 109.47196 * 174.84845 * 4 3 2 6 6 C 1.46897 * 110.99973 * 196.86190 * 5 4 3 7 7 C 1.50703 * 109.47322 * 67.23654 * 6 5 4 8 8 H 1.08006 * 119.99507 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00266 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99690 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47509 * 179.97438 * 11 9 7 13 13 H 1.48508 * 109.47291 * 299.99779 * 11 9 7 14 14 H 1.48504 * 109.47356 * 59.99474 * 11 9 7 15 15 C 1.46897 * 111.00197 * 72.90563 * 5 4 3 16 16 N 1.46503 * 109.47445 * 260.46625 * 15 5 4 17 17 C 1.34067 * 133.14705 * 96.11753 * 16 15 5 18 18 O 1.21283 * 133.45700 * 0.02562 * 17 16 15 19 19 C 1.49193 * 93.09450 * 179.97438 * 17 16 15 20 20 C 1.53010 * 121.92235 * 234.87079 * 19 17 16 21 21 C 1.53926 * 86.82081 * 258.03567 * 20 19 17 22 22 C 1.53018 * 121.91807 * 125.12476 * 19 17 16 23 23 C 1.45909 * 133.15137 * 275.77110 * 16 15 5 24 24 H 1.08999 * 113.53225 * 294.70936 * 23 16 15 25 25 C 1.53003 * 113.53243 * 65.35715 * 23 16 15 26 26 H 1.08997 * 110.27401 * 175.84797 * 25 23 16 27 27 C 1.54948 * 110.31055 * 298.04116 * 25 23 16 28 28 C 1.55308 * 100.94262 * 155.36039 * 27 25 23 29 29 C 1.54381 * 102.25309 * 325.86923 * 28 27 25 30 30 O 1.43248 * 107.58951 * 21.35480 * 29 28 27 31 31 H 1.08999 * 109.46940 * 157.80925 * 3 2 1 32 32 H 1.08992 * 109.47601 * 37.80441 * 3 2 1 33 33 H 1.09003 * 109.47285 * 54.84669 * 4 3 2 34 34 H 1.08998 * 109.46963 * 294.84582 * 4 3 2 35 35 H 1.08996 * 109.47351 * 307.22995 * 6 5 4 36 36 H 1.09004 * 109.46630 * 187.23314 * 6 5 4 37 37 H 0.96992 * 119.99907 * 359.97438 * 10 9 7 38 38 H 1.09000 * 109.47051 * 20.46348 * 15 5 4 39 39 H 1.08994 * 109.47162 * 140.46364 * 15 5 4 40 40 H 1.09000 * 113.65752 * 12.52204 * 20 19 17 41 41 H 1.08998 * 113.65793 * 143.55426 * 20 19 17 42 42 H 1.09005 * 113.58449 * 220.58502 * 21 20 19 43 43 H 1.08998 * 113.58500 * 89.78378 * 21 20 19 44 44 H 1.08994 * 113.66059 * 216.44496 * 22 19 17 45 45 H 1.09001 * 113.65828 * 347.49091 * 22 19 17 46 46 H 1.09000 * 111.12531 * 273.28228 * 27 25 23 47 47 H 1.09005 * 111.12463 * 37.44312 * 27 25 23 48 48 H 1.08998 * 110.85159 * 207.67588 * 28 27 25 49 49 H 1.09003 * 110.84575 * 84.05772 * 28 27 25 50 50 H 1.09002 * 109.83126 * 261.84460 * 29 28 27 51 51 H 1.09005 * 109.90902 * 140.90910 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1950 1.4292 5 7 4.5819 -0.3178 1.4142 6 6 5.0746 -0.8951 2.6719 7 6 4.6211 -2.3283 2.7784 8 1 4.0259 -2.7663 1.9907 9 6 4.9650 -3.0800 3.8819 10 7 5.6894 -2.5465 4.8412 11 14 4.4022 -4.8563 4.0142 12 1 4.9004 -5.4400 5.2855 13 1 2.9182 -4.9082 3.9932 14 1 4.9409 -5.6329 2.8689 15 6 5.2163 0.9798 1.1463 16 7 5.5982 1.0545 -0.2661 17 6 5.0064 1.5775 -1.3494 18 8 3.9596 2.1638 -1.5268 19 6 6.1196 1.1688 -2.2546 20 6 6.8501 2.1765 -3.1446 21 6 6.0047 1.6310 -4.3095 22 6 5.8755 0.3239 -3.5067 23 6 6.7652 0.5926 -1.0101 24 1 7.6895 1.0959 -0.7263 25 6 6.9047 -0.9307 -1.0437 26 1 7.7479 -1.2190 -1.6714 27 6 7.0853 -1.4861 0.3915 28 6 6.5642 -2.9382 0.2135 29 6 5.4428 -2.7580 -0.8322 30 8 5.6936 -1.5317 -1.5288 31 1 2.9709 0.9524 -0.3881 32 1 2.9718 -0.8111 -0.6299 33 1 2.6818 -1.1009 1.8499 34 1 2.8317 0.6628 2.0377 35 1 4.6792 -0.3254 3.5127 36 1 6.1639 -0.8567 2.6871 37 1 5.9819 -1.6243 4.7723 38 1 4.5146 1.7816 1.3759 39 1 6.1047 1.0852 1.7689 40 1 6.6345 3.2158 -2.8968 41 1 7.9167 1.9768 -3.2473 42 1 6.5633 1.5187 -5.2387 43 1 5.0585 2.1551 -4.4445 44 1 6.6690 -0.3949 -3.7109 45 1 4.8802 -0.1186 -3.5486 46 1 8.1346 -1.4786 0.6864 47 1 6.4744 -0.9343 1.1060 48 1 6.1625 -3.3239 1.1505 49 1 7.3508 -3.5884 -0.1694 50 1 4.4755 -2.7081 -0.3323 51 1 5.4532 -3.5912 -1.5350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811728069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:00 Heat of formation + Delta-G solvation = 14.213963 kcal Electronic energy + Delta-G solvation = -34208.427851 eV Core-core repulsion = 30110.197435 eV Total energy + Delta-G solvation = -4098.230416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.87415 -39.73007 -39.17839 -37.99355 -37.64447 -36.72462 -34.91220 -32.83679 -32.26933 -30.98604 -29.73702 -27.51508 -26.52749 -25.56679 -25.23352 -24.58477 -22.56051 -22.14518 -21.91866 -21.18981 -18.99602 -18.82906 -18.44450 -18.02021 -17.63626 -17.12632 -16.83762 -16.55695 -16.28152 -15.81366 -15.79787 -15.54781 -15.45845 -15.25775 -14.84128 -14.55563 -14.28682 -14.11067 -14.01716 -13.67818 -13.54856 -13.49010 -13.24384 -13.09253 -12.95810 -12.78544 -12.64608 -12.50954 -12.27612 -12.18567 -12.05867 -12.01221 -11.90655 -11.80557 -11.71981 -11.21456 -11.11494 -10.96238 -10.80166 -10.46268 -10.39388 -10.24555 -9.75426 -9.13508 -8.47515 -6.16761 1.48484 1.59210 1.61222 1.62667 1.68260 1.80233 2.04304 2.60526 2.82000 2.95652 3.19650 3.30482 3.44773 3.55713 3.74677 3.81969 3.94338 3.99735 4.02539 4.11617 4.17633 4.30396 4.34852 4.36262 4.54880 4.57626 4.58790 4.64566 4.74626 4.80427 4.86177 4.88860 4.96380 5.00211 5.07276 5.11696 5.13495 5.18485 5.20778 5.30598 5.34339 5.35812 5.52921 5.59483 5.65151 5.73133 5.85743 5.92982 6.10323 6.34844 6.41167 6.45519 6.56254 6.76698 7.34499 7.56138 8.91267 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.004833 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.569065 B = 5792.195453 C = 6851.544409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.238 3.762 3 C -0.027 4.027 4 C 0.078 3.922 5 N -0.522 5.522 6 C 0.201 3.799 7 C -0.562 4.562 8 H 0.055 0.945 9 C -0.022 4.022 10 N -0.943 5.943 11 Si 1.094 2.906 12 H -0.294 1.294 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.278 3.722 16 N -0.593 5.593 17 C 0.541 3.459 18 O -0.556 6.556 19 C -0.138 4.138 20 C -0.095 4.095 21 C -0.140 4.140 22 C -0.080 4.080 23 C 0.143 3.857 24 H 0.132 0.868 25 C 0.090 3.910 26 H 0.096 0.904 27 C -0.165 4.165 28 C -0.145 4.145 29 C 0.073 3.927 30 O -0.371 6.371 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.032 0.968 35 H -0.040 1.040 36 H 0.029 0.971 37 H 0.258 0.742 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.048 0.952 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 5.855 -15.845 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.079 4.079 3 C -0.067 4.067 4 C -0.052 4.052 5 N -0.248 5.248 6 C 0.075 3.925 7 C -0.601 4.601 8 H 0.073 0.927 9 C -0.221 4.221 10 N -0.581 5.581 11 Si 0.920 3.080 12 H -0.221 1.221 13 H -0.210 1.210 14 H -0.192 1.192 15 C 0.068 3.932 16 N -0.326 5.326 17 C 0.329 3.671 18 O -0.434 6.434 19 C -0.142 4.142 20 C -0.133 4.133 21 C -0.178 4.178 22 C -0.118 4.118 23 C 0.040 3.960 24 H 0.149 0.851 25 C 0.032 3.968 26 H 0.114 0.886 27 C -0.202 4.202 28 C -0.183 4.183 29 C -0.003 4.003 30 O -0.291 6.291 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.051 0.949 35 H -0.023 1.023 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.177 4.576 -15.263 17.909 hybrid contribution -0.230 1.514 0.731 1.697 sum 7.946 6.090 -14.531 17.646 Atomic orbital electron populations 1.81130 1.14048 1.11235 1.10266 1.29522 0.95503 0.91237 0.91597 1.19653 0.79764 1.07191 1.00090 1.21801 0.89116 1.01054 0.93209 1.61554 1.03883 1.23214 1.36148 1.19642 0.94712 0.94296 0.83836 1.21967 1.34990 0.96762 1.06346 0.92659 1.26593 0.95003 1.07933 0.92593 1.70915 1.36297 1.15813 1.35110 0.83177 0.76067 0.72455 0.76332 1.22061 1.21031 1.19227 1.21916 0.99074 0.90723 0.81530 1.50211 1.21295 1.54544 1.06570 1.21335 0.85313 0.76233 0.84202 1.90605 1.25912 1.44736 1.82192 1.23009 0.95274 1.00989 0.94891 1.22659 1.00495 0.97000 0.93137 1.22877 1.00130 0.96509 0.98263 1.22386 1.02674 0.96125 0.90617 1.22340 0.91193 0.94483 0.87967 0.85069 1.23015 0.88255 0.91092 0.94457 0.88608 1.23689 1.01619 0.96688 0.98241 1.22914 0.97646 0.97638 1.00091 1.22773 0.98358 0.86237 0.92971 1.88350 1.43015 1.36955 1.60754 0.86036 0.86907 0.90845 0.94948 1.02289 0.95306 0.93260 0.91694 0.88896 0.91459 0.85843 0.88921 0.91743 0.87261 0.92869 0.91282 0.87425 0.91052 0.91557 0.93419 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.98 18.54 20.01 0.37 -18.60 16 2 C 0.24 8.38 15.43 89.44 1.38 9.76 16 3 C -0.03 -0.86 5.40 28.79 0.16 -0.70 16 4 C 0.08 2.66 4.66 86.30 0.40 3.07 16 5 N -0.52 -17.23 3.41 -913.17 -3.12 -20.35 16 6 C 0.20 8.19 2.94 85.56 0.25 8.44 16 7 C -0.56 -25.93 6.32 25.60 0.16 -25.77 16 8 H 0.06 2.59 7.23 -2.91 -0.02 2.57 16 9 C -0.02 -1.12 5.46 84.65 0.46 -0.65 16 10 N -0.94 -51.57 13.65 21.45 0.29 -51.28 16 11 Si 1.09 46.43 29.90 68.60 2.05 48.48 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 15 C 0.28 7.78 5.27 170.81 0.90 8.68 16 16 N -0.59 -14.73 3.03 -869.52 -2.63 -17.36 16 17 C 0.54 14.69 8.00 84.35 0.67 15.36 16 18 O -0.56 -18.96 15.59 -3.04 -0.05 -19.01 16 19 C -0.14 -2.65 1.08 -53.83 -0.06 -2.71 16 20 C -0.10 -1.28 7.86 30.91 0.24 -1.04 16 21 C -0.14 -2.10 8.08 31.22 0.25 -1.85 16 22 C -0.08 -1.43 5.71 30.91 0.18 -1.25 16 23 C 0.14 2.72 4.25 41.69 0.18 2.90 16 24 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 25 C 0.09 1.90 3.03 31.26 0.09 1.99 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 C -0.17 -4.41 6.41 32.05 0.21 -4.20 16 28 C -0.15 -4.31 6.93 31.86 0.22 -4.08 16 29 C 0.07 2.08 7.79 72.45 0.56 2.65 16 30 O -0.37 -9.53 8.85 -148.98 -1.32 -10.85 16 31 H 0.12 4.03 3.77 -2.39 -0.01 4.02 16 32 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 33 H 0.07 2.86 6.67 -2.39 -0.02 2.84 16 34 H 0.03 1.10 7.72 -2.39 -0.02 1.08 16 35 H -0.04 -1.86 7.98 -2.39 -0.02 -1.88 16 36 H 0.03 1.22 6.04 -2.38 -0.01 1.21 16 37 H 0.26 14.04 7.22 -92.71 -0.67 13.37 16 38 H 0.07 1.84 7.41 -2.39 -0.02 1.83 16 39 H 0.09 2.44 7.25 -2.39 -0.02 2.42 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.11 1.58 7.87 -2.39 -0.02 1.56 16 45 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.11 3.33 1.08 -2.38 0.00 3.33 16 48 H 0.07 2.68 6.15 -2.39 -0.01 2.66 16 49 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.61 8.02 -2.39 -0.02 1.59 16 51 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -60.65 392.80 2.91 -57.73 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.05 Total: 20.64 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.26 Total: 10.60 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -5.09 Total: -107.59 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.37 Total: -29.86 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.05 Total: 48.48 kcal Total: -60.65 2.91 -57.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811728069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.946 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds