Wall clock time and date at job start Wed Apr 1 2020 04:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47534 * 65.92270 * 3 2 1 5 5 N 1.46898 * 109.47583 * 177.65735 * 4 3 2 6 6 C 1.46894 * 110.99968 * 195.17053 * 5 4 3 7 7 C 1.50701 * 109.47333 * 66.04721 * 6 5 4 8 8 H 1.07997 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00111 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47339 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.47168 * 300.00818 * 11 9 7 14 14 H 1.48503 * 109.46888 * 60.00288 * 11 9 7 15 15 C 1.46904 * 110.99698 * 71.21524 * 5 4 3 16 16 N 1.46499 * 109.46729 * 208.47760 * 15 5 4 17 17 C 1.34063 * 133.15079 * 81.45180 * 16 15 5 18 18 O 1.21286 * 133.45058 * 359.97438 * 17 16 15 19 19 C 1.49190 * 93.09843 * 179.97438 * 17 16 15 20 20 C 1.53015 * 121.92067 * 234.87350 * 19 17 16 21 21 C 1.53932 * 86.81816 * 258.03420 * 20 19 17 22 22 C 1.53013 * 121.92024 * 125.12842 * 19 17 16 23 23 C 1.45915 * 133.15001 * 261.09236 * 16 15 5 24 24 H 1.08994 * 113.53399 * 65.36113 * 23 16 15 25 25 C 1.53008 * 113.53194 * 294.71644 * 23 16 15 26 26 H 1.08995 * 110.27249 * 320.13853 * 25 23 16 27 27 C 1.54941 * 110.31044 * 82.33769 * 25 23 16 28 28 C 1.55308 * 100.94432 * 155.35511 * 27 25 23 29 29 C 1.54380 * 102.25019 * 325.86880 * 28 27 25 30 30 O 1.43241 * 107.59119 * 21.35438 * 29 28 27 31 31 H 1.09001 * 109.47771 * 305.92254 * 3 2 1 32 32 H 1.09004 * 109.47325 * 185.92343 * 3 2 1 33 33 H 1.09009 * 109.46522 * 57.65585 * 4 3 2 34 34 H 1.08995 * 109.47140 * 297.66126 * 4 3 2 35 35 H 1.09000 * 109.47183 * 306.04586 * 6 5 4 36 36 H 1.09005 * 109.46841 * 186.04519 * 6 5 4 37 37 H 0.96994 * 120.00204 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46806 * 328.47885 * 15 5 4 39 39 H 1.09000 * 109.46660 * 88.47899 * 15 5 4 40 40 H 1.09002 * 113.65455 * 12.51294 * 20 19 17 41 41 H 1.08992 * 113.66154 * 143.55088 * 20 19 17 42 42 H 1.09003 * 113.58148 * 220.58740 * 21 20 19 43 43 H 1.09003 * 113.58220 * 89.78068 * 21 20 19 44 44 H 1.08998 * 113.65453 * 216.44553 * 22 19 17 45 45 H 1.08999 * 113.65826 * 347.39090 * 22 19 17 46 46 H 1.09004 * 111.12451 * 273.27579 * 27 25 23 47 47 H 1.09004 * 111.12825 * 37.43697 * 27 25 23 48 48 H 1.08997 * 110.85331 * 207.67583 * 28 27 25 49 49 H 1.09000 * 111.01662 * 84.13305 * 28 27 25 50 50 H 1.09002 * 109.83219 * 261.83888 * 29 28 27 51 51 H 1.08999 * 109.83407 * 140.86530 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5876 -1.3170 5 7 4.5862 -0.5354 -1.3404 6 6 5.0988 -0.7477 -2.7006 7 6 4.6851 0.4047 -3.5790 8 1 4.1002 1.2142 -3.1679 9 6 5.0541 0.4263 -4.9073 10 7 5.7668 -0.5592 -5.4078 11 14 4.5407 1.8545 -5.9963 12 1 5.0590 1.6399 -7.3712 13 1 3.0586 1.9402 -6.0342 14 1 5.0957 3.1186 -5.4492 15 6 5.1626 -1.5083 -0.4027 16 7 6.4622 -1.0225 0.0674 17 6 6.8256 -0.1474 1.0159 18 8 6.2046 0.5358 1.8024 19 6 8.2805 -0.3296 0.7406 20 6 9.2691 -0.7222 1.8406 21 6 9.6911 0.7579 1.8706 22 6 9.1967 0.8521 0.4160 23 6 7.8377 -1.3179 -0.3200 24 1 8.0807 -1.0046 -1.3352 25 6 8.2588 -2.7593 -0.0264 26 1 7.8565 -3.0821 0.9338 27 6 7.7771 -3.7015 -1.1581 28 6 8.7973 -4.8651 -1.0273 29 6 10.0826 -4.1269 -0.5956 30 8 9.6910 -2.8706 -0.0297 31 1 2.9717 -0.6021 0.8322 32 1 2.9709 1.0230 0.1061 33 1 2.7208 -0.0095 -2.1513 34 1 2.7902 -1.6234 -1.4036 35 1 4.6907 -1.6753 -3.1020 36 1 6.1867 -0.8113 -2.6730 37 1 6.0261 -0.5442 -6.3424 38 1 4.4924 -1.6342 0.4477 39 1 5.2933 -2.4656 -0.9072 40 1 8.7896 -1.0590 2.7597 41 1 10.0567 -1.3948 1.5012 42 1 10.7663 0.9026 1.9760 43 1 9.1116 1.3625 2.5682 44 1 9.9640 0.6205 -0.3227 45 1 8.6593 1.7741 0.1940 46 1 6.7601 -4.0482 -0.9744 47 1 7.8554 -3.2180 -2.1319 48 1 8.9403 -5.3653 -1.9851 49 1 8.4833 -5.5763 -0.2633 50 1 10.7214 -3.9588 -1.4627 51 1 10.6160 -4.7176 0.1492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811728077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:08 Heat of formation + Delta-G solvation = 12.437057 kcal Electronic energy + Delta-G solvation = -32306.145248 eV Core-core repulsion = 28207.837779 eV Total energy + Delta-G solvation = -4098.307469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73628 -39.12325 -37.74110 -36.85738 -36.26977 -35.47786 -32.80494 -32.18239 -31.09980 -30.05348 -28.65894 -26.37260 -25.69350 -24.54734 -23.83147 -23.15413 -21.72059 -21.33707 -20.94969 -19.89277 -17.81938 -17.30974 -17.06558 -16.62948 -16.57568 -16.11712 -15.91934 -15.37440 -15.04990 -14.71815 -14.62684 -14.57283 -14.25934 -13.99779 -13.63837 -13.48797 -13.19899 -13.03833 -12.64723 -12.42433 -12.40316 -12.31166 -12.11479 -11.97840 -11.82655 -11.75832 -11.45003 -11.41171 -11.30498 -11.09152 -10.98957 -10.92607 -10.84245 -10.68778 -10.45151 -10.28332 -10.10981 -10.02087 -9.66636 -9.49291 -9.31594 -8.66141 -8.50538 -7.57732 -6.14898 -4.16286 2.73598 2.93594 2.99165 3.01014 3.27927 3.32221 3.35890 3.83058 4.06276 4.16840 4.32372 4.35513 4.50458 4.70275 4.75236 4.79135 4.86454 4.92797 4.94782 5.11929 5.19327 5.20299 5.23226 5.26265 5.35813 5.45338 5.49284 5.51283 5.57658 5.61771 5.73626 5.78633 5.81547 5.85329 5.92015 5.95821 6.00430 6.09147 6.17037 6.18514 6.24657 6.43289 6.47185 6.73311 6.87114 6.96050 7.09580 7.11446 7.62135 7.76471 7.84577 7.97122 8.32349 8.57237 8.90133 9.48939 10.95431 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.004148 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.730490 B = 6748.078589 C = 7978.755531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.220 3.780 3 C -0.029 4.029 4 C 0.073 3.927 5 N -0.548 5.548 6 C 0.200 3.800 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.288 1.288 13 H -0.277 1.277 14 H -0.275 1.275 15 C 0.286 3.714 16 N -0.596 5.596 17 C 0.555 3.445 18 O -0.512 6.512 19 C -0.145 4.145 20 C -0.102 4.102 21 C -0.139 4.139 22 C -0.100 4.100 23 C 0.144 3.856 24 H 0.106 0.894 25 C 0.087 3.913 26 H 0.074 0.926 27 C -0.152 4.152 28 C -0.155 4.155 29 C 0.051 3.949 30 O -0.369 6.369 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.033 0.967 35 H -0.006 1.006 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.666 -7.963 11.437 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.098 4.098 3 C -0.070 4.070 4 C -0.057 4.057 5 N -0.274 5.274 6 C 0.076 3.924 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.213 1.213 13 H -0.203 1.203 14 H -0.201 1.201 15 C 0.076 3.924 16 N -0.332 5.332 17 C 0.341 3.659 18 O -0.386 6.386 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.176 4.176 22 C -0.138 4.138 23 C 0.039 3.961 24 H 0.124 0.876 25 C 0.028 3.972 26 H 0.092 0.908 27 C -0.190 4.190 28 C -0.192 4.192 29 C -0.025 4.025 30 O -0.288 6.288 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.051 0.949 35 H 0.012 0.988 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.779 -7.124 11.834 16.367 hybrid contribution -0.282 -0.353 -1.374 1.446 sum 8.496 -7.477 10.460 15.411 Atomic orbital electron populations 1.81165 1.13180 1.09649 1.09207 1.29304 0.95348 0.92529 0.92621 1.19450 0.80616 1.05951 1.00966 1.21816 0.88562 0.99260 0.96064 1.61747 1.04844 1.49643 1.11193 1.19743 0.95579 0.96068 0.81041 1.21086 1.34073 1.06259 0.93629 0.91795 1.24932 0.95098 0.96155 0.98000 1.69915 1.37590 1.31633 1.14437 0.86598 0.78944 0.82772 0.79380 1.21348 1.20254 1.20085 1.21826 0.82905 0.92215 0.95486 1.49885 1.05064 1.42691 1.35561 1.20654 0.87988 0.77974 0.79302 1.90666 1.67368 1.41785 1.38784 1.23038 0.94939 0.98733 0.98117 1.22647 0.97539 0.97413 0.96377 1.22853 1.01002 0.96771 0.97017 1.22499 0.97411 0.96347 0.97515 1.21888 0.80438 0.93298 1.00478 0.87592 1.23011 0.81551 0.94300 0.98297 0.90803 1.23356 0.99695 0.95730 1.00200 1.23099 0.95185 0.98342 1.02615 1.23120 0.96625 0.84867 0.97928 1.88376 1.20486 1.37090 1.82841 0.88248 0.86443 0.88145 0.94876 0.98848 0.94906 0.92804 0.90195 0.92393 0.91551 0.87340 0.91157 0.89955 0.88711 0.90644 0.89956 0.89195 0.89932 0.90789 0.91212 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.85 18.54 42.15 0.78 -7.07 16 2 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 3 C -0.03 -0.39 5.72 -29.52 -0.17 -0.56 16 4 C 0.07 1.17 4.72 -3.82 -0.02 1.16 16 5 N -0.55 -9.93 4.56 -239.98 -1.09 -11.02 16 6 C 0.20 4.49 4.56 -4.98 -0.02 4.47 16 7 C -0.51 -13.08 8.29 -34.44 -0.29 -13.36 16 8 H 0.06 1.64 7.25 -52.49 -0.38 1.26 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -24.59 13.29 55.43 0.74 -23.86 16 11 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.29 4.27 6.41 -63.31 -0.41 3.87 16 16 N -0.60 -8.98 3.32 -188.63 -0.63 -9.61 16 17 C 0.56 9.02 9.15 -16.59 -0.15 8.87 16 18 O -0.51 -9.78 18.03 5.55 0.10 -9.68 16 19 C -0.14 -1.92 1.26 -157.15 -0.20 -2.11 16 20 C -0.10 -1.12 6.91 -26.24 -0.18 -1.31 16 21 C -0.14 -1.48 8.08 -25.77 -0.21 -1.69 16 22 C -0.10 -1.22 7.87 -26.24 -0.21 -1.43 16 23 C 0.14 1.94 3.95 -73.52 -0.29 1.65 16 24 H 0.11 1.64 7.83 -51.93 -0.41 1.23 16 25 C 0.09 0.98 2.87 -25.70 -0.07 0.91 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 C -0.15 -1.64 6.30 -24.48 -0.15 -1.80 16 28 C -0.15 -1.32 7.02 -24.78 -0.17 -1.49 16 29 C 0.05 0.45 7.79 37.88 0.30 0.75 16 30 O -0.37 -4.09 8.80 -35.23 -0.31 -4.40 16 31 H 0.10 1.16 6.59 -51.93 -0.34 0.82 16 32 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.10 1.86 6.59 -51.92 -0.34 1.51 16 34 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 35 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 36 H 0.03 0.79 7.80 -51.93 -0.41 0.39 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.05 6.17 -51.93 -0.32 0.73 16 39 H 0.06 0.82 6.74 -51.93 -0.35 0.47 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 1.15 6.10 -51.93 -0.32 0.83 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 0.85 7.32 -51.93 -0.38 0.47 16 47 H 0.09 1.15 8.03 -51.93 -0.42 0.74 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -30.38 413.67 -10.15 -40.53 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.29 Total: 0.79 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.66 Total: 2.37 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.20 Total: -51.56 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.21 Total: -14.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.38 -10.15 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811728077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.966 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds