Wall clock time and date at job start Wed Apr 1 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47534 * 65.92270 * 3 2 1 5 5 N 1.46898 * 109.47583 * 177.65735 * 4 3 2 6 6 C 1.46894 * 110.99968 * 195.17053 * 5 4 3 7 7 C 1.50701 * 109.47333 * 66.04721 * 6 5 4 8 8 H 1.07997 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00111 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47339 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.47168 * 300.00818 * 11 9 7 14 14 H 1.48503 * 109.46888 * 60.00288 * 11 9 7 15 15 C 1.46904 * 110.99698 * 71.21524 * 5 4 3 16 16 N 1.46499 * 109.46729 * 208.47760 * 15 5 4 17 17 C 1.34063 * 133.15079 * 81.45180 * 16 15 5 18 18 O 1.21286 * 133.45058 * 359.97438 * 17 16 15 19 19 C 1.49190 * 93.09843 * 179.97438 * 17 16 15 20 20 C 1.53015 * 121.92067 * 234.87350 * 19 17 16 21 21 C 1.53932 * 86.81816 * 258.03420 * 20 19 17 22 22 C 1.53013 * 121.92024 * 125.12842 * 19 17 16 23 23 C 1.45915 * 133.15001 * 261.09236 * 16 15 5 24 24 H 1.08994 * 113.53399 * 65.36113 * 23 16 15 25 25 C 1.53008 * 113.53194 * 294.71644 * 23 16 15 26 26 H 1.08995 * 110.27249 * 320.13853 * 25 23 16 27 27 C 1.54941 * 110.31044 * 82.33769 * 25 23 16 28 28 C 1.55308 * 100.94432 * 155.35511 * 27 25 23 29 29 C 1.54380 * 102.25019 * 325.86880 * 28 27 25 30 30 O 1.43241 * 107.59119 * 21.35438 * 29 28 27 31 31 H 1.09001 * 109.47771 * 305.92254 * 3 2 1 32 32 H 1.09004 * 109.47325 * 185.92343 * 3 2 1 33 33 H 1.09009 * 109.46522 * 57.65585 * 4 3 2 34 34 H 1.08995 * 109.47140 * 297.66126 * 4 3 2 35 35 H 1.09000 * 109.47183 * 306.04586 * 6 5 4 36 36 H 1.09005 * 109.46841 * 186.04519 * 6 5 4 37 37 H 0.96994 * 120.00204 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46806 * 328.47885 * 15 5 4 39 39 H 1.09000 * 109.46660 * 88.47899 * 15 5 4 40 40 H 1.09002 * 113.65455 * 12.51294 * 20 19 17 41 41 H 1.08992 * 113.66154 * 143.55088 * 20 19 17 42 42 H 1.09003 * 113.58148 * 220.58740 * 21 20 19 43 43 H 1.09003 * 113.58220 * 89.78068 * 21 20 19 44 44 H 1.08998 * 113.65453 * 216.44553 * 22 19 17 45 45 H 1.08999 * 113.65826 * 347.39090 * 22 19 17 46 46 H 1.09004 * 111.12451 * 273.27579 * 27 25 23 47 47 H 1.09004 * 111.12825 * 37.43697 * 27 25 23 48 48 H 1.08997 * 110.85331 * 207.67583 * 28 27 25 49 49 H 1.09000 * 111.01662 * 84.13305 * 28 27 25 50 50 H 1.09002 * 109.83219 * 261.83888 * 29 28 27 51 51 H 1.08999 * 109.83407 * 140.86530 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5876 -1.3170 5 7 4.5862 -0.5354 -1.3404 6 6 5.0988 -0.7477 -2.7006 7 6 4.6851 0.4047 -3.5790 8 1 4.1002 1.2142 -3.1679 9 6 5.0541 0.4263 -4.9073 10 7 5.7668 -0.5592 -5.4078 11 14 4.5407 1.8545 -5.9963 12 1 5.0590 1.6399 -7.3712 13 1 3.0586 1.9402 -6.0342 14 1 5.0957 3.1186 -5.4492 15 6 5.1626 -1.5083 -0.4027 16 7 6.4622 -1.0225 0.0674 17 6 6.8256 -0.1474 1.0159 18 8 6.2046 0.5358 1.8024 19 6 8.2805 -0.3296 0.7406 20 6 9.2691 -0.7222 1.8406 21 6 9.6911 0.7579 1.8706 22 6 9.1967 0.8521 0.4160 23 6 7.8377 -1.3179 -0.3200 24 1 8.0807 -1.0046 -1.3352 25 6 8.2588 -2.7593 -0.0264 26 1 7.8565 -3.0821 0.9338 27 6 7.7771 -3.7015 -1.1581 28 6 8.7973 -4.8651 -1.0273 29 6 10.0826 -4.1269 -0.5956 30 8 9.6910 -2.8706 -0.0297 31 1 2.9717 -0.6021 0.8322 32 1 2.9709 1.0230 0.1061 33 1 2.7208 -0.0095 -2.1513 34 1 2.7902 -1.6234 -1.4036 35 1 4.6907 -1.6753 -3.1020 36 1 6.1867 -0.8113 -2.6730 37 1 6.0261 -0.5442 -6.3424 38 1 4.4924 -1.6342 0.4477 39 1 5.2933 -2.4656 -0.9072 40 1 8.7896 -1.0590 2.7597 41 1 10.0567 -1.3948 1.5012 42 1 10.7663 0.9026 1.9760 43 1 9.1116 1.3625 2.5682 44 1 9.9640 0.6205 -0.3227 45 1 8.6593 1.7741 0.1940 46 1 6.7601 -4.0482 -0.9744 47 1 7.8554 -3.2180 -2.1319 48 1 8.9403 -5.3653 -1.9851 49 1 8.4833 -5.5763 -0.2633 50 1 10.7214 -3.9588 -1.4627 51 1 10.6160 -4.7176 0.1492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811728077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:07 Heat of formation + Delta-G solvation = -5.110463 kcal Electronic energy + Delta-G solvation = -32306.906165 eV Core-core repulsion = 28207.837779 eV Total energy + Delta-G solvation = -4099.068386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.85056 -39.98972 -39.08936 -38.05697 -37.57205 -36.72493 -34.74361 -32.98958 -32.41196 -31.12588 -29.97843 -27.96766 -26.64164 -25.63788 -24.88839 -24.85005 -22.50235 -22.47054 -22.11919 -21.11358 -18.95987 -18.66770 -18.41094 -17.99210 -17.78148 -17.26661 -16.92070 -16.62079 -16.37431 -16.13457 -15.79749 -15.70503 -15.37133 -15.14700 -15.05833 -14.57302 -14.36021 -14.12803 -14.01863 -13.93115 -13.68913 -13.53984 -13.35123 -13.21119 -13.08069 -12.80042 -12.71272 -12.67799 -12.48278 -12.32622 -12.28205 -12.15004 -11.98107 -11.93044 -11.74296 -11.68035 -11.35319 -11.24265 -11.05305 -10.65480 -10.56656 -10.46894 -9.86837 -9.08678 -8.18336 -6.25089 1.41740 1.42412 1.46927 1.50129 1.69824 1.76632 1.88290 2.40692 2.85724 2.92166 3.00203 3.16002 3.39889 3.56240 3.64419 3.71191 3.79480 3.95627 3.96430 4.04496 4.07586 4.13879 4.22725 4.25292 4.27283 4.35111 4.43221 4.56294 4.63049 4.76876 4.86872 4.88726 4.92802 4.96885 4.99057 5.02514 5.05525 5.08355 5.14707 5.17456 5.23886 5.27551 5.28492 5.32289 5.55927 5.58603 5.69284 5.72928 6.07180 6.11470 6.29124 6.51724 6.58737 6.89120 7.31566 7.43608 8.91157 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.004148 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.730490 B = 6748.078589 C = 7978.755531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.243 3.757 3 C -0.012 4.012 4 C 0.075 3.925 5 N -0.557 5.557 6 C 0.221 3.779 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.951 3.049 12 H -0.285 1.285 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.282 3.718 16 N -0.597 5.597 17 C 0.546 3.454 18 O -0.546 6.546 19 C -0.146 4.146 20 C -0.088 4.088 21 C -0.129 4.129 22 C -0.105 4.105 23 C 0.145 3.855 24 H 0.079 0.921 25 C 0.098 3.902 26 H 0.085 0.915 27 C -0.155 4.155 28 C -0.147 4.147 29 C 0.046 3.954 30 O -0.379 6.379 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.048 0.952 35 H -0.026 1.026 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -8.864 12.829 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.074 4.074 3 C -0.053 4.053 4 C -0.055 4.055 5 N -0.283 5.283 6 C 0.095 3.905 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.777 3.223 12 H -0.210 1.210 13 H -0.199 1.199 14 H -0.199 1.199 15 C 0.072 3.928 16 N -0.332 5.332 17 C 0.333 3.667 18 O -0.422 6.422 19 C -0.149 4.149 20 C -0.126 4.126 21 C -0.166 4.166 22 C -0.143 4.143 23 C 0.040 3.960 24 H 0.097 0.903 25 C 0.039 3.961 26 H 0.103 0.897 27 C -0.193 4.193 28 C -0.184 4.184 29 C -0.030 4.030 30 O -0.298 6.298 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.066 0.934 35 H -0.008 1.008 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.088 0.912 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.765 -8.039 13.227 18.301 hybrid contribution -0.569 -0.078 -1.832 1.920 sum 9.195 -8.117 11.396 16.742 Atomic orbital electron populations 1.81194 1.14341 1.11002 1.10470 1.29392 0.95283 0.91303 0.91409 1.19343 0.79455 1.06268 1.00189 1.21742 0.87255 0.99902 0.96605 1.61621 1.06154 1.51240 1.09320 1.19294 0.94088 0.94035 0.83046 1.21427 1.33463 1.06845 0.94277 0.92296 1.25637 0.95303 0.98260 0.99369 1.70014 1.38713 1.33142 1.14652 0.85719 0.78639 0.80104 0.77853 1.21014 1.19855 1.19900 1.22015 0.83402 0.91760 0.95632 1.49997 1.05638 1.42457 1.35085 1.21167 0.89271 0.77427 0.78879 1.90634 1.68407 1.43023 1.40150 1.23116 0.93856 0.99169 0.98787 1.22629 0.96734 0.97811 0.95417 1.22807 1.02338 0.96291 0.95204 1.22589 0.97399 0.95115 0.99231 1.21880 0.79688 0.95220 0.99179 0.90303 1.22847 0.82044 0.92446 0.98715 0.89732 1.23314 1.00778 0.96623 0.98587 1.23092 0.94081 0.97651 1.03591 1.23301 0.96840 0.84227 0.98650 1.88348 1.19973 1.38469 1.83041 0.85539 0.86415 0.90863 0.93411 1.00848 0.97044 0.92857 0.87555 0.91399 0.91136 0.86297 0.88752 0.90716 0.87664 0.92486 0.89585 0.92021 0.89367 0.88993 0.91163 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.60 18.54 20.00 0.37 -16.23 16 2 C 0.24 6.97 15.43 89.44 1.38 8.35 16 3 C -0.01 -0.31 5.72 28.79 0.16 -0.14 16 4 C 0.07 2.36 4.72 86.30 0.41 2.77 16 5 N -0.56 -20.21 4.56 -913.16 -4.16 -24.37 16 6 C 0.22 10.21 4.56 85.56 0.39 10.60 16 7 C -0.52 -27.22 8.29 25.60 0.21 -27.01 16 8 H 0.06 3.07 7.25 -2.91 -0.02 3.05 16 9 C 0.01 0.71 5.46 84.66 0.46 1.17 16 10 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 11 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 C 0.28 8.18 6.41 170.81 1.09 9.28 16 16 N -0.60 -17.83 3.32 -869.50 -2.88 -20.71 16 17 C 0.55 17.55 9.15 84.35 0.77 18.32 16 18 O -0.55 -20.67 18.03 -3.05 -0.05 -20.72 16 19 C -0.15 -3.78 1.26 -53.83 -0.07 -3.85 16 20 C -0.09 -1.77 6.91 30.91 0.21 -1.56 16 21 C -0.13 -2.53 8.08 31.22 0.25 -2.28 16 22 C -0.11 -2.54 7.87 30.91 0.24 -2.30 16 23 C 0.14 3.92 3.95 41.68 0.16 4.09 16 24 H 0.08 2.57 7.83 -2.39 -0.02 2.56 16 25 C 0.10 2.10 2.87 31.26 0.09 2.19 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 C -0.16 -3.26 6.30 32.05 0.20 -3.06 16 28 C -0.15 -2.21 7.02 31.86 0.22 -1.98 16 29 C 0.05 0.71 7.79 72.45 0.56 1.28 16 30 O -0.38 -7.71 8.80 -148.98 -1.31 -9.02 16 31 H 0.13 2.58 6.59 -2.39 -0.02 2.57 16 32 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.07 2.73 6.59 -2.38 -0.02 2.72 16 34 H 0.05 1.37 8.06 -2.39 -0.02 1.36 16 35 H -0.03 -1.30 8.12 -2.39 -0.02 -1.32 16 36 H 0.01 0.58 7.80 -2.38 -0.02 0.56 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.11 2.53 6.17 -2.39 -0.01 2.52 16 39 H 0.07 1.86 6.74 -2.39 -0.02 1.85 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 2.19 6.10 -2.39 -0.01 2.18 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 1.71 7.32 -2.39 -0.02 1.69 16 47 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.59 413.67 1.97 -64.62 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.93 Total: 17.11 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.77 Total: 15.88 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -6.39 Total: -112.83 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.37 Total: -29.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.59 1.97 -64.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811728077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.510 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds