Wall clock time and date at job start Wed Apr 1 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47065 * 270.00193 * 3 2 1 5 5 H 1.48505 * 109.46928 * 29.99649 * 3 2 1 6 6 H 1.48498 * 109.47482 * 149.99370 * 3 2 1 7 7 C 1.37880 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46884 * 175.38470 * 9 7 2 11 11 C 1.46899 * 110.99687 * 295.43921 * 10 9 7 12 12 C 1.53241 * 109.33845 * 187.25549 * 11 10 9 13 13 N 1.47078 * 108.52038 * 306.17160 * 12 11 10 14 14 C 1.34781 * 120.88027 * 231.18489 * 13 12 11 15 15 O 1.21344 * 119.99885 * 8.15834 * 14 13 12 16 16 C 1.49458 * 119.99845 * 188.15675 * 14 13 12 17 17 O 1.21345 * 119.99745 * 6.37162 * 16 14 13 18 18 N 1.34773 * 119.99716 * 186.37080 * 16 14 13 19 19 C 1.47284 * 125.65016 * 180.02562 * 18 16 14 20 20 C 1.55803 * 106.72177 * 182.47573 * 19 18 16 21 21 H 1.09004 * 113.26370 * 212.22479 * 20 19 18 22 22 C 1.53154 * 105.29995 * 88.40948 * 20 19 18 23 23 C 1.50085 * 112.33678 * 211.07808 * 22 20 19 24 24 C 1.29186 * 125.03151 * 16.33510 * 23 22 20 25 25 C 1.49627 * 123.39555 * 358.83403 * 24 23 22 26 26 C 1.50016 * 113.24738 * 12.55267 * 25 24 23 27 27 H 1.08998 * 108.27600 * 200.26383 * 26 25 24 28 28 C 1.48047 * 125.65362 * 0.04035 * 18 16 14 29 29 C 1.47075 * 118.23791 * 51.45966 * 13 12 11 30 30 C 1.46894 * 111.00478 * 59.74278 * 10 9 7 31 31 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47177 * 55.38157 * 9 7 2 33 33 H 1.08998 * 109.46863 * 295.37894 * 9 7 2 34 34 H 1.09003 * 109.49249 * 67.29729 * 11 10 9 35 35 H 1.09000 * 109.49865 * 307.21467 * 11 10 9 36 36 H 1.09006 * 109.62649 * 186.46321 * 12 11 10 37 37 H 1.08996 * 109.79090 * 65.97522 * 12 11 10 38 38 H 1.08994 * 110.01112 * 63.15254 * 19 18 16 39 39 H 1.09003 * 110.04105 * 301.80906 * 19 18 16 40 40 H 1.09004 * 108.79667 * 331.13490 * 22 20 19 41 41 H 1.09007 * 108.79904 * 89.36957 * 22 20 19 42 42 H 1.07994 * 117.29837 * 197.09368 * 23 22 20 43 43 H 1.08000 * 118.30505 * 178.80788 * 24 23 22 44 44 H 1.08999 * 108.72421 * 251.57782 * 25 24 23 45 45 H 1.08999 * 108.72749 * 133.52465 * 25 24 23 46 46 H 1.09000 * 110.60081 * 321.82724 * 28 18 16 47 47 H 1.09004 * 110.59447 * 84.77247 * 28 18 16 48 48 H 1.09005 * 109.62942 * 68.25262 * 29 13 12 49 49 H 1.09005 * 109.63263 * 188.83112 * 29 13 12 50 50 H 1.08997 * 109.49274 * 292.70948 * 30 10 9 51 51 H 1.09007 * 109.49294 * 52.75789 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2018 -3.6135 -0.1103 11 6 2.9039 -3.5800 -1.4002 12 6 3.7471 -4.8506 -1.5521 13 7 4.6175 -4.9773 -0.3734 14 6 5.9436 -5.1751 -0.5107 15 8 6.4573 -5.1034 -1.6078 16 6 6.7814 -5.4826 0.6881 17 8 6.2543 -5.6685 1.7652 18 7 8.1224 -5.5534 0.5729 19 6 9.0637 -5.8470 1.6670 20 6 10.4966 -5.7566 1.0619 21 1 11.2046 -6.4420 1.5277 22 6 10.9051 -4.2878 1.2083 23 6 11.8233 -3.8389 0.1092 24 6 12.0044 -4.4632 -1.0072 25 6 11.3283 -5.7538 -1.3481 26 6 10.2062 -6.0992 -0.4143 27 1 10.0150 -7.1695 -0.4908 28 6 8.8933 -5.3485 -0.6743 29 6 4.0015 -4.8887 0.9593 30 6 3.1493 -3.6109 1.0123 31 1 -0.4850 0.8401 -0.0004 32 1 0.5641 -2.5221 -0.8454 33 1 0.6876 -2.5933 0.9288 34 1 3.5536 -2.7056 -1.4382 35 1 2.1756 -3.5279 -2.2096 36 1 4.3577 -4.7793 -2.4523 37 1 3.0943 -5.7207 -1.6205 38 1 8.8847 -6.8502 2.0538 39 1 8.9490 -5.1138 2.4653 40 1 10.0079 -3.6694 1.1818 41 1 11.3932 -4.1535 2.1737 42 1 12.3832 -2.9299 0.2719 43 1 12.6783 -4.0311 -1.7321 44 1 12.0673 -6.5544 -1.3186 45 1 10.9317 -5.6842 -2.3610 46 1 8.3670 -5.7799 -1.5257 47 1 9.0840 -4.2877 -0.8374 48 1 3.3703 -5.7609 1.1296 49 1 4.7805 -4.8427 1.7204 50 1 3.7955 -2.7361 0.9408 51 1 2.5989 -3.5805 1.9527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867782592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:38 Heat of formation + Delta-G solvation = -17.785877 kcal Electronic energy + Delta-G solvation = -31680.999585 eV Core-core repulsion = 27581.381552 eV Total energy + Delta-G solvation = -4099.618034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25840 -40.03104 -38.35761 -37.56537 -35.70011 -34.35153 -32.32230 -32.11908 -31.42710 -30.68018 -28.38125 -27.77859 -26.33498 -25.28223 -23.93472 -23.11423 -22.45312 -21.79120 -21.21745 -20.12607 -18.93283 -17.80891 -17.17051 -16.84160 -16.79121 -16.25720 -16.12119 -15.72916 -15.05122 -14.79966 -14.54429 -14.43954 -14.37380 -14.19346 -13.95363 -13.68909 -13.56932 -13.36614 -13.19362 -12.98872 -12.72435 -12.51691 -12.28891 -12.19162 -12.04508 -11.84762 -11.38647 -11.20998 -11.13819 -11.00438 -10.88110 -10.73888 -10.62597 -10.53098 -10.44138 -10.21001 -9.93202 -9.68763 -9.33878 -9.14055 -8.84162 -8.50885 -8.46210 -7.25381 -6.06427 -4.15790 1.45801 1.99076 2.22304 3.23139 3.25201 3.32218 3.35381 3.37054 3.90950 4.12737 4.23216 4.29147 4.37933 4.72204 4.82391 4.86978 4.95618 4.97528 5.00995 5.10571 5.23896 5.28917 5.35699 5.41236 5.42524 5.48565 5.53152 5.54033 5.66388 5.68674 5.76672 5.79238 5.81210 5.88171 5.92133 5.94875 6.01986 6.24159 6.33599 6.45925 6.62757 6.63249 6.63578 6.73102 7.02540 7.20937 7.37949 7.48068 7.67088 7.85562 7.96858 8.05478 8.19146 8.24887 8.94065 9.51534 10.98688 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002687 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.863995 B =10419.573121 C =11320.146990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.542 5.542 11 C 0.052 3.948 12 C 0.112 3.888 13 N -0.570 5.570 14 C 0.507 3.493 15 O -0.531 6.531 16 C 0.523 3.477 17 O -0.511 6.511 18 N -0.593 5.593 19 C 0.106 3.894 20 C -0.092 4.092 21 H 0.104 0.896 22 C -0.089 4.089 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.077 4.077 26 C -0.100 4.100 27 H 0.079 0.921 28 C 0.106 3.894 29 C 0.077 3.923 30 C 0.050 3.950 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.129 0.871 50 H 0.041 0.959 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.227 -13.810 0.036 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.266 5.266 11 C -0.078 4.078 12 C -0.010 4.010 13 N -0.302 5.302 14 C 0.289 3.711 15 O -0.409 6.409 16 C 0.307 3.693 17 O -0.388 6.388 18 N -0.328 5.328 19 C -0.017 4.017 20 C -0.111 4.111 21 H 0.122 0.878 22 C -0.126 4.126 23 C -0.171 4.171 24 C -0.172 4.172 25 C -0.114 4.114 26 C -0.119 4.119 27 H 0.098 0.902 28 C -0.016 4.016 29 C -0.045 4.045 30 C -0.080 4.080 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.146 0.854 50 H 0.059 0.941 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.645 -14.179 0.076 26.718 hybrid contribution 0.775 1.998 -0.020 2.144 sum 23.420 -12.181 0.055 26.399 Atomic orbital electron populations 1.69942 1.05986 1.26888 1.50007 1.24953 0.94765 0.99139 0.94821 0.86653 0.79919 0.83631 0.78186 1.20595 1.21051 1.20005 1.21742 0.93270 0.92138 1.51910 0.92634 1.19767 0.90700 0.85303 0.98026 1.62519 1.16695 1.46962 1.00454 1.22216 0.96673 0.94838 0.94041 1.22022 0.92043 0.99507 0.87429 1.48097 1.05455 1.66851 1.09803 1.19814 0.83212 0.79314 0.88750 1.90661 1.71575 1.51519 1.27185 1.20016 0.81540 0.78470 0.89253 1.90549 1.70270 1.49009 1.28981 1.48431 1.04410 1.68066 1.11863 1.22542 0.87596 1.01773 0.89740 1.22445 0.95218 0.97594 0.95853 0.87770 1.20588 0.99211 0.94952 0.97843 1.21896 0.99468 1.00146 0.95595 1.21847 1.00731 0.97096 0.97552 1.19545 0.96248 0.96128 0.99475 1.21336 0.94786 1.01025 0.94738 0.90224 1.22552 0.90432 1.01196 0.87433 1.23119 0.98851 0.99108 0.83417 1.22373 0.94563 0.95095 0.95944 0.92756 0.94666 0.95145 0.93883 0.90129 0.89254 0.90694 0.90980 0.90474 0.90546 0.90593 0.88074 0.87528 0.90380 0.90335 0.87572 0.90788 0.91002 0.85380 0.94062 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.55 -15.10 7.76 -34.44 -0.27 -15.37 16 8 H 0.06 1.53 5.87 -52.49 -0.31 1.22 16 9 C 0.19 4.76 5.11 -4.98 -0.03 4.74 16 10 N -0.54 -11.49 4.83 -235.47 -1.14 -12.62 16 11 C 0.05 1.00 5.24 -3.70 -0.02 0.98 16 12 C 0.11 1.82 6.61 -3.60 -0.02 1.80 16 13 N -0.57 -9.51 3.00 -172.69 -0.52 -10.03 16 14 C 0.51 8.20 7.70 -11.58 -0.09 8.11 16 15 O -0.53 -8.93 13.26 5.50 0.07 -8.86 16 16 C 0.52 7.74 7.78 -11.58 -0.09 7.65 16 17 O -0.51 -8.25 13.52 5.50 0.07 -8.17 16 18 N -0.59 -7.04 3.34 -170.27 -0.57 -7.61 16 19 C 0.11 0.96 5.98 -2.12 -0.01 0.94 16 20 C -0.09 -0.63 3.88 -88.37 -0.34 -0.98 16 21 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.09 -0.65 4.78 -28.10 -0.13 -0.78 16 23 C -0.15 -1.12 9.78 -35.83 -0.35 -1.47 16 24 C -0.15 -1.06 9.88 -36.05 -0.36 -1.42 16 25 C -0.08 -0.48 5.59 -29.88 -0.17 -0.65 16 26 C -0.10 -0.74 2.60 -91.19 -0.24 -0.98 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 C 0.11 1.10 5.15 -2.96 -0.02 1.08 16 29 C 0.08 1.28 6.14 -3.37 -0.02 1.26 16 30 C 0.05 0.97 5.18 -3.47 -0.02 0.95 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.93 7.09 -51.93 -0.37 0.56 16 35 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 36 H 0.09 1.40 7.05 -51.93 -0.37 1.03 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.72 7.66 -51.93 -0.40 0.32 16 40 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 46 H 0.11 1.25 6.10 -51.93 -0.32 0.93 16 47 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.13 2.14 4.43 -54.29 -0.24 1.90 16 50 H 0.04 0.90 6.64 -51.93 -0.34 0.55 16 51 H 0.08 1.55 8.11 -51.92 -0.42 1.13 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -30.84 388.31 -10.93 -41.77 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.16 Total: 0.82 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.27 Total: 7.63 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -1.49 Total: -55.55 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.15 Total: -17.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.84 -10.93 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867782592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds