Wall clock time and date at job start Wed Apr 1 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47065 * 270.00193 * 3 2 1 5 5 H 1.48505 * 109.46928 * 29.99649 * 3 2 1 6 6 H 1.48498 * 109.47482 * 149.99370 * 3 2 1 7 7 C 1.37880 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46884 * 175.38470 * 9 7 2 11 11 C 1.46899 * 110.99687 * 295.43921 * 10 9 7 12 12 C 1.53241 * 109.33845 * 187.25549 * 11 10 9 13 13 N 1.47078 * 108.52038 * 306.17160 * 12 11 10 14 14 C 1.34781 * 120.88027 * 231.18489 * 13 12 11 15 15 O 1.21344 * 119.99885 * 8.15834 * 14 13 12 16 16 C 1.49458 * 119.99845 * 188.15675 * 14 13 12 17 17 O 1.21345 * 119.99745 * 6.37162 * 16 14 13 18 18 N 1.34773 * 119.99716 * 186.37080 * 16 14 13 19 19 C 1.47284 * 125.65016 * 180.02562 * 18 16 14 20 20 C 1.55803 * 106.72177 * 182.47573 * 19 18 16 21 21 H 1.09004 * 113.26370 * 212.22479 * 20 19 18 22 22 C 1.53154 * 105.29995 * 88.40948 * 20 19 18 23 23 C 1.50085 * 112.33678 * 211.07808 * 22 20 19 24 24 C 1.29186 * 125.03151 * 16.33510 * 23 22 20 25 25 C 1.49627 * 123.39555 * 358.83403 * 24 23 22 26 26 C 1.50016 * 113.24738 * 12.55267 * 25 24 23 27 27 H 1.08998 * 108.27600 * 200.26383 * 26 25 24 28 28 C 1.48047 * 125.65362 * 0.04035 * 18 16 14 29 29 C 1.47075 * 118.23791 * 51.45966 * 13 12 11 30 30 C 1.46894 * 111.00478 * 59.74278 * 10 9 7 31 31 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47177 * 55.38157 * 9 7 2 33 33 H 1.08998 * 109.46863 * 295.37894 * 9 7 2 34 34 H 1.09003 * 109.49249 * 67.29729 * 11 10 9 35 35 H 1.09000 * 109.49865 * 307.21467 * 11 10 9 36 36 H 1.09006 * 109.62649 * 186.46321 * 12 11 10 37 37 H 1.08996 * 109.79090 * 65.97522 * 12 11 10 38 38 H 1.08994 * 110.01112 * 63.15254 * 19 18 16 39 39 H 1.09003 * 110.04105 * 301.80906 * 19 18 16 40 40 H 1.09004 * 108.79667 * 331.13490 * 22 20 19 41 41 H 1.09007 * 108.79904 * 89.36957 * 22 20 19 42 42 H 1.07994 * 117.29837 * 197.09368 * 23 22 20 43 43 H 1.08000 * 118.30505 * 178.80788 * 24 23 22 44 44 H 1.08999 * 108.72421 * 251.57782 * 25 24 23 45 45 H 1.08999 * 108.72749 * 133.52465 * 25 24 23 46 46 H 1.09000 * 110.60081 * 321.82724 * 28 18 16 47 47 H 1.09004 * 110.59447 * 84.77247 * 28 18 16 48 48 H 1.09005 * 109.62942 * 68.25262 * 29 13 12 49 49 H 1.09005 * 109.63263 * 188.83112 * 29 13 12 50 50 H 1.08997 * 109.49274 * 292.70948 * 30 10 9 51 51 H 1.09007 * 109.49294 * 52.75789 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2018 -3.6135 -0.1103 11 6 2.9039 -3.5800 -1.4002 12 6 3.7471 -4.8506 -1.5521 13 7 4.6175 -4.9773 -0.3734 14 6 5.9436 -5.1751 -0.5107 15 8 6.4573 -5.1034 -1.6078 16 6 6.7814 -5.4826 0.6881 17 8 6.2543 -5.6685 1.7652 18 7 8.1224 -5.5534 0.5729 19 6 9.0637 -5.8470 1.6670 20 6 10.4966 -5.7566 1.0619 21 1 11.2046 -6.4420 1.5277 22 6 10.9051 -4.2878 1.2083 23 6 11.8233 -3.8389 0.1092 24 6 12.0044 -4.4632 -1.0072 25 6 11.3283 -5.7538 -1.3481 26 6 10.2062 -6.0992 -0.4143 27 1 10.0150 -7.1695 -0.4908 28 6 8.8933 -5.3485 -0.6743 29 6 4.0015 -4.8887 0.9593 30 6 3.1493 -3.6109 1.0123 31 1 -0.4850 0.8401 -0.0004 32 1 0.5641 -2.5221 -0.8454 33 1 0.6876 -2.5933 0.9288 34 1 3.5536 -2.7056 -1.4382 35 1 2.1756 -3.5279 -2.2096 36 1 4.3577 -4.7793 -2.4523 37 1 3.0943 -5.7207 -1.6205 38 1 8.8847 -6.8502 2.0538 39 1 8.9490 -5.1138 2.4653 40 1 10.0079 -3.6694 1.1818 41 1 11.3932 -4.1535 2.1737 42 1 12.3832 -2.9299 0.2719 43 1 12.6783 -4.0311 -1.7321 44 1 12.0673 -6.5544 -1.3186 45 1 10.9317 -5.6842 -2.3610 46 1 8.3670 -5.7799 -1.5257 47 1 9.0840 -4.2877 -0.8374 48 1 3.3703 -5.7609 1.1296 49 1 4.7805 -4.8427 1.7204 50 1 3.7955 -2.7361 0.9408 51 1 2.5989 -3.5805 1.9527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867782592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:37 Heat of formation + Delta-G solvation = -37.172143 kcal Electronic energy + Delta-G solvation = -31681.840237 eV Core-core repulsion = 27581.381552 eV Total energy + Delta-G solvation = -4100.458685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29012 -41.03168 -39.56008 -39.03531 -36.65682 -35.83912 -34.33418 -32.72680 -32.18455 -32.15539 -30.10854 -28.51455 -27.74221 -26.67683 -25.16148 -24.51876 -23.75369 -22.92488 -22.04028 -21.43125 -20.28588 -18.74372 -18.52952 -18.10715 -17.88317 -17.59207 -17.10235 -16.86260 -16.64728 -16.08500 -16.01567 -15.79076 -15.39727 -15.28310 -15.18237 -14.85052 -14.74942 -14.44460 -14.31410 -14.00083 -13.85295 -13.63933 -13.57155 -13.18527 -13.04775 -12.98562 -12.81395 -12.78924 -12.68103 -12.54143 -12.33873 -12.21880 -11.94387 -11.85611 -11.77725 -11.62410 -11.28607 -11.00046 -10.65011 -10.35392 -10.00012 -9.86117 -9.76459 -9.10583 -8.20418 -6.39540 0.24102 1.11337 1.32292 1.33152 1.43280 1.47194 2.00739 2.22614 2.32954 2.96441 3.04859 3.28640 3.38901 3.48901 3.65264 3.94682 4.04488 4.11693 4.25007 4.25881 4.29752 4.31083 4.33495 4.43880 4.48328 4.51653 4.55963 4.64828 4.68098 4.74091 4.76148 4.86341 4.92594 4.95177 4.98896 5.02588 5.09455 5.13113 5.14883 5.18707 5.25241 5.28628 5.33356 5.37282 5.69133 5.81401 5.90282 5.99561 6.09619 6.11810 6.20113 6.40277 6.48600 6.79654 6.82102 7.31910 8.82257 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002687 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.863995 B =10419.573121 C =11320.146990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.537 5.537 11 C 0.055 3.945 12 C 0.122 3.878 13 N -0.579 5.579 14 C 0.505 3.495 15 O -0.539 6.539 16 C 0.519 3.481 17 O -0.530 6.530 18 N -0.587 5.587 19 C 0.099 3.901 20 C -0.079 4.079 21 H 0.132 0.868 22 C -0.089 4.089 23 C -0.167 4.167 24 C -0.155 4.155 25 C -0.076 4.076 26 C -0.092 4.092 27 H 0.090 0.910 28 C 0.104 3.896 29 C 0.093 3.907 30 C 0.053 3.947 31 H 0.266 0.734 32 H 0.013 0.987 33 H 0.009 0.991 34 H 0.015 0.985 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.134 0.866 50 H 0.015 0.985 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.859 -14.896 0.008 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.261 5.261 11 C -0.074 4.074 12 C 0.001 3.999 13 N -0.311 5.311 14 C 0.288 3.712 15 O -0.418 6.418 16 C 0.302 3.698 17 O -0.409 6.409 18 N -0.320 5.320 19 C -0.022 4.022 20 C -0.098 4.098 21 H 0.150 0.850 22 C -0.126 4.126 23 C -0.185 4.185 24 C -0.173 4.173 25 C -0.113 4.113 26 C -0.111 4.111 27 H 0.109 0.891 28 C -0.018 4.018 29 C -0.029 4.029 30 C -0.076 4.076 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.151 0.849 50 H 0.034 0.966 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 25.326 -15.280 0.035 29.578 hybrid contribution 0.008 2.327 -0.052 2.328 sum 25.333 -12.953 -0.018 28.453 Atomic orbital electron populations 1.70045 1.07357 1.27946 1.50783 1.25748 0.95602 1.02597 0.94452 0.85635 0.78603 0.79499 0.78435 1.19878 1.20214 1.19789 1.21938 0.93048 0.93222 1.51640 0.93285 1.19438 0.91030 0.86252 0.95865 1.62461 1.17039 1.44678 1.01906 1.22223 0.96471 0.95663 0.93073 1.21925 0.91932 0.98294 0.87783 1.48165 1.05910 1.67330 1.09697 1.20137 0.83047 0.78759 0.89282 1.90657 1.71670 1.51714 1.27721 1.19742 0.82503 0.79083 0.88448 1.90523 1.70813 1.50428 1.29131 1.48551 1.03839 1.66197 1.13381 1.22793 0.88240 1.02139 0.89004 1.22500 0.94115 0.97876 0.95268 0.85000 1.20575 0.98403 0.94886 0.98690 1.21979 0.99959 1.00627 0.95949 1.22037 1.00583 0.97272 0.97434 1.19586 0.96164 0.96513 0.99080 1.21316 0.93416 1.01054 0.95364 0.89132 1.22594 0.91806 1.00926 0.86459 1.22967 0.98495 0.97624 0.83771 1.22379 0.94049 0.95906 0.95296 0.92457 0.96841 0.97271 0.96617 0.89912 0.88352 0.88681 0.90015 0.90757 0.92794 0.89312 0.87825 0.86670 0.88295 0.90223 0.88899 0.91905 0.89646 0.84911 0.96632 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 13.29 21.45 0.28 -54.53 16 2 C 0.02 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.56 -31.42 7.76 25.60 0.20 -31.22 16 8 H 0.05 2.78 5.87 -2.91 -0.02 2.76 16 9 C 0.20 10.55 5.11 85.56 0.44 10.99 16 10 N -0.54 -23.19 4.83 -898.90 -4.34 -27.53 16 11 C 0.05 2.15 5.24 86.38 0.45 2.60 16 12 C 0.12 3.88 6.61 86.35 0.57 4.45 16 13 N -0.58 -18.95 3.00 -818.62 -2.46 -21.41 16 14 C 0.50 16.05 7.70 87.27 0.67 16.73 16 15 O -0.54 -17.83 13.26 -3.23 -0.04 -17.87 16 16 C 0.52 15.02 7.78 87.27 0.68 15.70 16 17 O -0.53 -16.72 13.52 -3.23 -0.04 -16.76 16 18 N -0.59 -13.34 3.34 -810.98 -2.71 -16.05 16 19 C 0.10 1.62 5.98 87.20 0.52 2.14 16 20 C -0.08 -0.87 3.88 -9.33 -0.04 -0.91 16 21 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 22 C -0.09 -1.14 4.78 29.71 0.14 -0.99 16 23 C -0.17 -2.15 9.78 27.29 0.27 -1.89 16 24 C -0.16 -1.80 9.88 27.15 0.27 -1.53 16 25 C -0.08 -0.76 5.59 28.55 0.16 -0.60 16 26 C -0.09 -1.14 2.60 -11.16 -0.03 -1.17 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 C 0.10 2.05 5.15 86.23 0.44 2.50 16 29 C 0.09 3.06 6.14 86.50 0.53 3.59 16 30 C 0.05 2.11 5.18 86.54 0.45 2.56 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.01 0.76 8.07 -2.39 -0.02 0.74 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.02 0.69 7.09 -2.39 -0.02 0.68 16 35 H 0.08 3.17 8.06 -2.39 -0.02 3.15 16 36 H 0.10 2.97 7.05 -2.38 -0.02 2.95 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 40 H 0.05 0.94 7.12 -2.38 -0.02 0.92 16 41 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.10 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.81 8.10 -2.39 -0.02 0.79 16 46 H 0.09 2.11 6.10 -2.39 -0.01 2.10 16 47 H 0.06 1.39 7.73 -2.38 -0.02 1.38 16 48 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 49 H 0.13 4.38 4.43 -39.77 -0.18 4.21 16 50 H 0.02 0.70 6.64 -2.39 -0.02 0.68 16 51 H 0.08 3.13 8.11 -2.38 -0.02 3.11 16 Total: -1.00 -66.96 388.31 -0.34 -67.30 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.76 Total: 15.94 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.19 Total: 24.31 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -9.23 Total: -119.52 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.09 Total: -34.64 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.96 -0.34 -67.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867782592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.129 kcal (2) G-P(sol) polarization free energy of solvation -66.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds