Wall clock time and date at job start Wed Apr 1 2020 05:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.45252 * 2 1 4 4 C 1.53102 * 109.45959 * 240.03052 * 2 1 3 5 5 C 1.53441 * 109.72531 * 170.09841 * 4 2 1 6 6 C 1.50562 * 108.30396 * 49.99028 * 5 4 2 7 7 O 1.33157 * 129.73322 * 163.28468 * 6 5 4 8 8 N 1.21460 * 111.27289 * 179.90061 * 7 6 5 9 9 C 1.30692 * 111.69067 * 0.37204 * 8 7 6 10 10 C 1.50703 * 127.01975 * 179.82866 * 9 8 7 11 11 N 1.46897 * 109.47306 * 269.68281 * 10 9 8 12 12 C 1.46905 * 110.99826 * 189.99830 * 11 10 9 13 13 C 1.53243 * 109.33672 * 187.25448 * 12 11 10 14 14 N 1.47076 * 108.52280 * 306.17389 * 13 12 11 15 15 C 1.34777 * 120.88062 * 231.18540 * 14 13 12 16 16 O 1.21687 * 120.00006 * 5.22924 * 15 14 13 17 17 C 1.46376 * 120.00313 * 185.22734 * 15 14 13 18 18 H 1.07997 * 119.99552 * 354.99977 * 17 15 14 19 19 C 1.40044 * 120.00321 * 175.00114 * 17 15 14 20 20 N 1.30673 * 119.99689 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00192 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47234 * 269.99511 * 21 19 17 23 23 H 1.48504 * 109.46981 * 29.99629 * 21 19 17 24 24 H 1.48500 * 109.47228 * 149.99275 * 21 19 17 25 25 C 1.47077 * 118.23996 * 51.45605 * 14 13 12 26 26 C 1.46898 * 111.00153 * 314.30128 * 11 10 9 27 27 C 1.35516 * 123.80848 * 343.33875 * 6 5 4 28 28 C 1.50079 * 124.86149 * 359.73709 * 27 6 5 29 29 H 1.09007 * 109.47141 * 300.03227 * 1 2 3 30 30 H 1.09001 * 109.46704 * 60.02700 * 1 2 3 31 31 H 1.08990 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47438 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47590 * 299.97002 * 3 2 1 34 34 H 1.09008 * 109.47389 * 59.96802 * 3 2 1 35 35 H 1.08997 * 109.43212 * 290.17363 * 4 2 1 36 36 H 1.09005 * 109.43026 * 50.07453 * 4 2 1 37 37 H 1.09004 * 109.69900 * 169.69684 * 5 4 2 38 38 H 1.09007 * 109.69551 * 290.28631 * 5 4 2 39 39 H 1.09008 * 109.47033 * 149.68360 * 10 9 8 40 40 H 1.09000 * 109.46752 * 29.68780 * 10 9 8 41 41 H 1.08994 * 109.49159 * 67.30254 * 12 11 10 42 42 H 1.08999 * 109.51460 * 307.22708 * 12 11 10 43 43 H 1.08999 * 109.62657 * 186.46027 * 13 12 11 44 44 H 1.09008 * 109.62520 * 65.87988 * 13 12 11 45 45 H 0.97000 * 120.00181 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.62715 * 68.25082 * 25 14 13 47 47 H 1.09000 * 109.63081 * 188.83321 * 25 14 13 48 48 H 1.09001 * 109.49368 * 292.70476 * 26 11 10 49 49 H 1.08999 * 109.49029 * 52.75792 * 26 11 10 50 50 H 1.09003 * 109.71037 * 103.57572 * 28 27 6 51 51 H 1.08996 * 109.71164 * 224.15699 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2505 5 6 3.5542 -0.5131 -1.3870 6 6 4.1982 -0.8475 -0.0678 7 8 5.4736 -1.1044 0.2159 8 7 5.6244 -1.3329 1.3992 9 6 4.4937 -1.2689 2.0515 10 6 4.2830 -1.4949 3.5265 11 7 3.9941 -2.9148 3.7680 12 6 3.5515 -3.1341 5.1515 13 6 3.4355 -4.6393 5.4146 14 7 2.5680 -5.2284 4.3833 15 6 1.5254 -6.0125 4.7217 16 8 1.2335 -6.1646 5.8932 17 6 0.7440 -6.6812 3.6801 18 1 0.9512 -6.4833 2.6388 19 6 -0.2721 -7.5777 4.0337 20 7 -0.5225 -7.8175 5.2936 21 14 -1.2687 -8.4315 2.7044 22 1 -2.4559 -7.6053 2.3681 23 1 -0.4289 -8.6078 1.4924 24 1 -1.7136 -9.7603 3.1959 25 6 2.8721 -4.9441 2.9726 26 6 3.0067 -3.4222 2.8059 27 6 3.5185 -0.9413 1.1008 28 6 2.0416 -0.7231 1.2541 29 1 -0.3634 0.5144 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3634 -1.0275 0.0005 32 1 3.1295 1.4431 0.0005 33 1 1.6765 1.9563 -0.8902 34 1 1.6756 1.9566 0.8897 35 1 1.8266 -1.7867 -1.1671 36 1 1.5388 -0.3188 -2.1309 37 1 3.9466 -1.1690 -2.1642 38 1 3.7606 0.5260 -1.6437 39 1 3.4442 -0.8898 3.8707 40 1 5.1838 -1.2099 4.0700 41 1 2.5802 -2.6628 5.3017 42 1 4.2770 -2.6995 5.8391 43 1 2.9990 -4.8063 6.3993 44 1 4.4238 -5.0966 5.3666 45 1 -1.2261 -8.4387 5.5386 46 1 3.8073 -5.4301 2.6945 47 1 2.0630 -5.3127 2.3421 48 1 2.0430 -2.9467 2.9888 49 1 3.3373 -3.1960 1.7921 50 1 1.5367 -1.6838 1.3562 51 1 1.8498 -0.1117 2.1358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878671911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:18 Heat of formation + Delta-G solvation = 4.657261 kcal Electronic energy + Delta-G solvation = -32293.819028 eV Core-core repulsion = 28195.174202 eV Total energy + Delta-G solvation = -4098.644826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.00664 -40.58994 -39.89654 -38.58073 -36.01968 -34.68708 -34.23536 -33.69579 -32.13290 -31.33413 -29.78743 -28.38924 -28.17791 -27.90637 -25.84946 -24.71269 -24.53903 -22.81144 -22.69689 -21.34719 -20.52793 -19.15198 -18.69119 -18.47939 -18.06759 -17.80757 -16.61650 -16.35459 -16.05569 -15.91373 -15.87920 -15.72080 -15.49202 -15.47688 -15.19823 -14.60944 -14.40269 -14.25527 -14.11532 -13.89254 -13.71240 -13.31564 -13.18998 -13.01602 -12.91264 -12.78753 -12.76463 -12.70639 -12.59982 -12.46651 -12.28488 -12.07977 -12.05324 -11.99157 -11.87887 -11.56316 -11.47036 -11.22419 -10.95370 -10.94034 -9.95529 -9.81633 -9.54870 -9.06695 -8.30499 -6.85862 0.51509 1.14623 1.39053 1.40587 1.55814 2.13527 2.22554 2.44059 2.68986 2.93977 3.10336 3.46385 3.57187 3.65072 3.80872 3.90064 3.91503 4.04516 4.05023 4.15591 4.21733 4.26660 4.32017 4.34215 4.44567 4.50361 4.55809 4.60200 4.66689 4.69861 4.72011 4.80132 4.83767 4.84768 4.88167 4.92233 4.94515 5.00694 5.06836 5.10567 5.15554 5.17261 5.24617 5.35651 5.41571 5.46933 5.55130 5.68403 5.87491 5.90733 6.09910 6.37453 6.86305 7.30804 7.38648 8.44085 8.65565 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003374 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.037512 B = 8295.690984 C = 9708.502592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.035 4.035 6 C -0.028 4.028 7 O 0.097 5.903 8 N -0.384 5.384 9 C 0.025 3.975 10 C 0.136 3.864 11 N -0.535 5.535 12 C 0.060 3.940 13 C 0.122 3.878 14 N -0.646 5.646 15 C 0.542 3.458 16 O -0.631 6.631 17 C -0.569 4.569 18 H 0.092 0.908 19 C 0.030 3.970 20 N -0.822 5.822 21 Si 0.994 3.006 22 H -0.259 1.259 23 H -0.248 1.248 24 H -0.274 1.274 25 C 0.128 3.872 26 C 0.059 3.941 27 C -0.201 4.201 28 C -0.038 4.038 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.274 0.726 46 H 0.052 0.948 47 H 0.088 0.912 48 H 0.032 0.968 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 19.917 -17.553 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.072 4.072 6 C -0.092 4.092 7 O 0.033 5.967 8 N -0.091 5.091 9 C -0.133 4.133 10 C 0.009 3.991 11 N -0.261 5.261 12 C -0.069 4.069 13 C -0.001 4.001 14 N -0.383 5.383 15 C 0.348 3.652 16 O -0.518 6.518 17 C -0.605 4.605 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.452 5.452 21 Si 0.813 3.187 22 H -0.184 1.184 23 H -0.171 1.171 24 H -0.199 1.199 25 C 0.004 3.996 26 C -0.069 4.069 27 C -0.205 4.205 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.046 0.954 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.106 0.894 48 H 0.051 0.949 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.106 19.236 -16.480 26.056 hybrid contribution -1.638 -0.189 0.494 1.721 sum 4.469 19.047 -15.986 25.265 Atomic orbital electron populations 1.21850 0.93313 1.02050 1.02623 1.20644 0.96098 0.95749 0.93634 1.21925 1.00796 0.94517 1.02521 1.21750 0.92949 1.01176 0.98499 1.20491 0.94161 1.04462 0.88135 1.24745 0.83184 1.01272 1.00031 1.84693 1.27753 1.64232 1.20013 1.74260 1.24219 1.20159 0.90424 1.22963 0.89353 1.02432 0.98524 1.20362 1.02319 0.88643 0.87799 1.62029 1.44430 1.16111 1.03530 1.22373 0.99179 0.95780 0.89525 1.21311 0.93609 0.92596 0.92623 1.48121 1.30880 1.53099 1.06227 1.18663 0.79357 0.78033 0.89114 1.90535 1.71763 1.67281 1.22268 1.21471 1.18468 1.26812 0.93730 0.89034 1.26978 0.97271 0.95898 0.98335 1.70188 1.26529 1.28441 1.20009 0.85076 0.78313 0.77395 0.77927 1.18362 1.17070 1.19858 1.21688 1.00498 0.94323 0.83100 1.22532 0.93140 0.94929 0.96337 1.20769 0.98781 1.09023 0.91951 1.20165 0.87204 1.00810 0.99335 0.92853 0.90682 0.92969 0.93102 0.90598 0.93159 0.91799 0.87608 0.87481 0.86803 0.91669 0.88409 0.95375 0.87439 0.91976 0.92435 0.91584 0.92984 0.89405 0.94934 0.89728 0.91140 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.44 71.98 0.61 -1.13 16 2 C -0.06 -0.79 0.77 -51.97 -0.04 -0.83 16 3 C -0.14 -1.58 7.72 71.98 0.56 -1.02 16 4 C -0.11 -1.09 4.83 30.78 0.15 -0.95 16 5 C -0.03 -0.37 5.66 29.95 0.17 -0.20 16 6 C -0.03 -0.53 6.65 25.01 0.17 -0.37 16 7 O 0.10 2.37 11.20 78.93 0.88 3.26 16 8 N -0.38 -10.93 12.10 -48.63 -0.59 -11.51 16 9 C 0.02 0.65 5.39 43.18 0.23 0.88 16 10 C 0.14 3.48 5.85 85.56 0.50 3.98 16 11 N -0.53 -16.44 4.77 -898.86 -4.29 -20.72 16 12 C 0.06 1.93 5.58 86.38 0.48 2.41 16 13 C 0.12 5.07 6.61 86.35 0.57 5.64 16 14 N -0.65 -30.85 3.00 -822.12 -2.47 -33.32 16 15 C 0.54 32.16 7.63 86.36 0.66 32.82 16 16 O -0.63 -43.01 14.49 -4.31 -0.06 -43.07 16 17 C -0.57 -32.30 8.86 24.83 0.22 -32.08 16 18 H 0.09 4.65 5.74 -2.91 -0.02 4.63 16 19 C 0.03 1.69 5.50 85.30 0.47 2.16 16 20 N -0.82 -50.58 11.84 21.83 0.26 -50.32 16 21 Si 0.99 40.61 29.56 68.60 2.03 42.63 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 C 0.13 5.01 6.50 86.50 0.56 5.57 16 26 C 0.06 1.92 4.30 86.54 0.37 2.29 16 27 C -0.20 -4.33 4.14 -20.24 -0.08 -4.42 16 28 C -0.04 -0.70 4.63 29.83 0.14 -0.57 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.65 5.66 -2.39 -0.01 0.63 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 36 H 0.11 0.61 8.11 -2.38 -0.02 0.59 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.79 6.99 -2.38 -0.02 0.77 16 39 H 0.07 1.52 8.08 -2.38 -0.02 1.50 16 40 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 2.79 8.11 -2.39 -0.02 2.78 16 43 H 0.06 2.89 7.04 -2.39 -0.02 2.87 16 44 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 46 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.09 3.52 5.46 -2.39 -0.01 3.50 16 48 H 0.03 1.09 7.25 -2.39 -0.02 1.08 16 49 H 0.08 2.57 5.55 -2.39 -0.01 2.55 16 50 H 0.07 1.52 6.81 -2.39 -0.02 1.51 16 51 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 Total: -1.00 -78.74 388.10 2.43 -76.31 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.94 Total: 22.53 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.73 Total: 14.21 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -7.09 Total: -115.87 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: 0.82 Total: -39.81 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -78.74 2.43 -76.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878671911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.970 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds