Wall clock time and date at job start Wed Apr 1 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48505 * 109.47136 * 269.99976 * 3 2 1 5 5 H 1.48498 * 109.47390 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.47048 * 150.00321 * 3 2 1 7 7 C 1.40028 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.41325 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.40605 * 119.78986 * 179.97438 * 9 7 2 11 11 C 1.38317 * 119.13051 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67186 * 359.72634 * 11 10 9 13 13 C 1.39647 * 119.49393 * 0.55421 * 12 11 10 14 14 N 1.39248 * 119.57594 * 179.70770 * 13 12 11 15 15 C 1.34776 * 120.00532 * 174.29242 * 14 13 12 16 16 O 1.21576 * 119.99253 * 5.00569 * 15 14 13 17 17 N 1.34769 * 120.00571 * 185.00485 * 15 14 13 18 18 C 1.46498 * 120.00185 * 179.72123 * 17 15 14 19 19 C 1.53007 * 109.47112 * 180.27867 * 18 17 15 20 20 H 1.08997 * 109.46854 * 304.99761 * 19 18 17 21 21 C 1.52998 * 109.46933 * 65.00018 * 19 18 17 22 22 O 1.42904 * 109.46707 * 183.73084 * 21 19 18 23 23 C 1.53003 * 109.46809 * 184.99993 * 19 18 17 24 24 C 1.53001 * 109.47038 * 65.61059 * 23 19 18 25 25 C 1.52997 * 109.46948 * 179.97438 * 24 23 19 26 26 C 1.53000 * 109.47151 * 60.00192 * 25 24 23 27 27 C 1.53005 * 109.46697 * 299.99755 * 26 25 24 28 28 C 1.52993 * 109.47228 * 305.60830 * 23 19 18 29 29 N 1.31930 * 120.85111 * 359.43497 * 13 12 11 30 30 H 0.97001 * 119.99649 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.43555 * 359.97347 * 10 9 7 32 32 H 1.08000 * 120.66093 * 180.02562 * 11 10 9 33 33 H 1.08000 * 120.25653 * 180.28748 * 12 11 10 34 34 H 0.97005 * 119.99908 * 354.28365 * 14 13 12 35 35 H 0.97003 * 119.99576 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.47486 * 300.27763 * 18 17 15 37 37 H 1.08996 * 109.47316 * 60.27919 * 18 17 15 38 38 H 1.08996 * 109.47369 * 303.72516 * 21 19 18 39 39 H 1.09003 * 109.47204 * 63.73388 * 21 19 18 40 40 H 0.96705 * 113.99509 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.46516 * 185.60732 * 23 19 18 42 42 H 1.09000 * 109.47072 * 299.99695 * 24 23 19 43 43 H 1.09002 * 109.47094 * 59.99401 * 24 23 19 44 44 H 1.09000 * 109.47239 * 299.99903 * 25 24 23 45 45 H 1.08998 * 109.47029 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.46860 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.47285 * 59.99739 * 26 25 24 48 48 H 1.09000 * 109.47240 * 300.00011 * 27 26 25 49 49 H 1.09002 * 109.46754 * 180.02562 * 27 26 25 50 50 H 1.08998 * 109.47212 * 300.00116 * 28 23 19 51 51 H 1.09000 * 109.47157 * 60.00137 * 28 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6517 -0.0016 11 6 1.3030 -4.8415 -0.0022 12 6 -0.0830 -4.7934 0.0042 13 6 -0.7280 -3.5548 -0.0008 14 7 -2.1196 -3.5046 -0.0006 15 6 -2.7512 -2.3192 0.1107 16 8 -2.1090 -1.2869 0.1193 17 7 -4.0944 -2.2781 0.2125 18 6 -4.7803 -0.9900 0.3396 19 6 -6.2888 -1.2236 0.4444 20 1 -6.6253 -1.8128 -0.4086 21 6 -6.5995 -1.9771 1.7392 22 8 -7.9967 -2.2716 1.7954 23 6 -7.0142 0.1236 0.4516 24 6 -6.8179 0.8157 -0.8987 25 6 -7.5438 2.1625 -0.8917 26 6 -6.9727 3.0439 0.2210 27 6 -7.1690 2.3516 1.5713 28 6 -6.4426 1.0046 1.5642 29 7 -0.0359 -2.4317 -0.0003 30 1 -0.4850 0.8401 0.0004 31 1 3.0883 -3.6560 -0.0029 32 1 1.8212 -5.7891 -0.0026 33 1 -0.6592 -5.7069 0.0087 34 1 -2.6345 -4.3228 -0.0806 35 1 -4.6066 -3.1019 0.2060 36 1 -4.4290 -0.4780 1.2354 37 1 -4.5676 -0.3770 -0.5362 38 1 -6.0310 -2.9067 1.7639 39 1 -6.3237 -1.3596 2.5940 40 1 -8.2662 -2.7494 2.5918 41 1 -8.0781 -0.0376 0.6260 42 1 -5.7541 0.9768 -1.0732 43 1 -7.2251 0.1880 -1.6914 44 1 -8.6076 2.0010 -0.7174 45 1 -7.4036 2.6558 -1.8535 46 1 -7.4902 4.0032 0.2262 47 1 -5.9089 3.2054 0.0467 48 1 -8.2328 2.1902 1.7455 49 1 -6.7626 2.9797 2.3640 50 1 -6.5825 0.5115 2.5261 51 1 -5.3788 1.1657 1.3897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:24 Heat of formation + Delta-G solvation = -44.918894 kcal Electronic energy + Delta-G solvation = -31380.990149 eV Core-core repulsion = 27280.195539 eV Total energy + Delta-G solvation = -4100.794609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.94315 -39.12289 -37.64090 -36.90690 -34.96099 -33.94147 -32.94596 -32.38883 -30.87109 -30.24731 -29.14114 -28.28694 -25.86143 -25.20638 -23.46875 -22.61348 -21.91438 -21.13914 -20.54152 -19.74938 -19.12382 -18.00926 -17.59483 -16.88458 -16.23962 -15.82431 -15.26654 -15.21623 -14.69271 -14.58378 -14.39229 -14.24640 -14.13268 -13.92804 -13.65835 -13.50315 -13.01321 -12.75814 -12.71999 -12.51996 -12.25345 -12.22461 -11.90694 -11.88008 -11.69927 -11.32484 -11.14312 -10.95836 -10.91013 -10.85954 -10.61084 -10.43080 -10.42153 -10.18317 -10.03679 -9.92607 -9.89429 -9.64440 -9.07653 -8.98415 -8.40913 -7.91164 -7.16823 -6.89988 -6.06852 -4.35066 2.88110 3.16578 3.19975 3.22328 3.30015 3.30793 3.99269 4.10292 4.27156 4.46039 4.59328 4.61174 4.82334 4.88158 4.97519 4.99978 5.05325 5.18420 5.30292 5.32625 5.42789 5.44696 5.51130 5.52797 5.59805 5.63759 5.85868 5.90671 5.98304 6.04536 6.09264 6.10838 6.12842 6.14275 6.15859 6.19215 6.31153 6.46085 6.51636 6.65286 6.83869 6.88815 7.01748 7.27818 7.40102 7.41002 7.66108 7.78395 7.85534 8.21458 8.34049 8.70585 8.84522 9.10505 9.64323 10.31577 10.53962 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.003200 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.005874 B = 8748.504673 C =10918.234416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.387 3.613 14 N -0.674 5.674 15 C 0.662 3.338 16 O -0.462 6.462 17 N -0.762 5.762 18 C 0.149 3.851 19 C -0.093 4.093 20 H 0.081 0.919 21 C 0.078 3.922 22 O -0.573 6.573 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.123 4.123 29 N -0.471 5.471 30 H 0.271 0.729 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.394 0.606 35 H 0.382 0.618 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.377 0.623 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.201 0.720 2.483 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.266 5.266 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.148 3.852 14 N -0.322 5.322 15 C 0.360 3.640 16 O -0.326 6.326 17 N -0.423 5.423 18 C 0.024 3.976 19 C -0.111 4.111 20 H 0.100 0.900 21 C 0.000 4.000 22 O -0.378 6.378 23 C -0.089 4.089 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.160 4.160 29 N -0.190 5.190 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.215 0.785 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.223 0.777 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.194 3.080 1.932 18.553 hybrid contribution 0.298 -1.398 0.511 1.518 sum -17.895 1.683 2.443 18.139 Atomic orbital electron populations 1.70354 1.05552 1.27238 1.23458 1.26185 0.95135 1.00467 0.95486 0.86563 0.80588 0.82105 0.78981 1.19700 1.20365 1.18798 1.19567 0.94009 0.89397 1.42631 0.90035 1.18393 0.87181 0.91933 0.87893 1.21620 0.98512 0.93559 1.19342 1.20540 0.93135 0.96497 0.95863 1.20433 0.94748 0.94803 1.28539 1.18340 0.82472 0.90865 0.93568 1.42572 1.05225 1.07902 1.76544 1.16442 0.81359 0.85489 0.80670 1.91388 1.62303 1.29871 1.48988 1.45380 1.05832 1.08538 1.82544 1.21148 0.88597 0.85312 1.02513 1.21417 0.94930 0.97109 0.97692 0.90029 1.22292 0.81535 0.98286 0.97878 1.86459 1.24643 1.79821 1.46888 1.21021 1.00178 0.92585 0.95153 1.21692 1.01342 0.96035 0.96740 1.21502 0.99638 0.95843 0.98469 1.21554 1.01421 0.98058 0.94877 1.21510 1.00327 0.96454 0.97152 1.21753 1.00614 0.95274 0.98342 1.68701 1.06833 1.23130 1.20339 0.91695 0.88632 0.88679 0.89225 0.77339 0.78528 0.91557 0.91085 0.93566 0.93126 0.77679 0.90211 0.91238 0.92082 0.92290 0.92212 0.92431 0.91739 0.92317 0.92237 0.92058 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.19 8.99 55.55 0.50 -17.69 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 3 Si 0.89 19.49 29.56 -169.99 -5.02 14.47 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.43 -11.87 9.14 -37.74 -0.34 -12.22 16 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 9 C 0.27 7.74 6.55 -85.00 -0.56 7.18 16 10 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.17 9.95 -38.89 -0.39 -8.56 16 13 C 0.39 9.59 7.43 -154.99 -1.15 8.44 16 14 N -0.67 -13.48 5.39 -15.79 -0.09 -13.56 16 15 C 0.66 13.59 8.52 -86.93 -0.74 12.85 16 16 O -0.46 -11.81 12.10 5.30 0.06 -11.74 16 17 N -0.76 -11.15 5.25 -65.23 -0.34 -11.49 16 18 C 0.15 1.99 4.25 -4.04 -0.02 1.98 16 19 C -0.09 -0.96 1.91 -90.62 -0.17 -1.13 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.08 0.73 6.20 37.16 0.23 0.96 16 22 O -0.57 -5.14 13.05 -35.23 -0.46 -5.60 16 23 C -0.07 -0.70 1.91 -90.62 -0.17 -0.87 16 24 C -0.12 -1.21 4.98 -26.73 -0.13 -1.34 16 25 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 26 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 27 C -0.12 -1.07 5.92 -26.71 -0.16 -1.23 16 28 C -0.12 -1.23 4.47 -26.71 -0.12 -1.35 16 29 N -0.47 -13.45 5.74 -10.26 -0.06 -13.51 16 30 H 0.27 7.16 8.29 -40.82 -0.34 6.83 16 31 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 32 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.39 6.05 8.72 -40.82 -0.36 5.70 16 35 H 0.38 4.39 7.67 -40.82 -0.31 4.07 16 36 H 0.07 0.98 6.65 -51.93 -0.35 0.64 16 37 H 0.07 1.06 6.37 -51.93 -0.33 0.73 16 38 H 0.05 0.42 7.10 -51.93 -0.37 0.05 16 39 H 0.05 0.48 6.42 -51.93 -0.33 0.14 16 40 H 0.38 1.84 9.12 45.56 0.42 2.26 16 41 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 42 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 51 H 0.07 0.82 6.45 -51.93 -0.34 0.48 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -34.06 394.52 -11.61 -45.67 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.23 Total: 13.34 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.92 Total: -5.83 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.01 Total: -56.25 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.40 Total: -17.34 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.06 -11.61 -45.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.753 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds