Wall clock time and date at job start Wed Apr 1 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48505 * 109.47136 * 269.99976 * 3 2 1 5 5 H 1.48498 * 109.47390 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.47048 * 150.00321 * 3 2 1 7 7 C 1.40028 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.41325 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.40605 * 119.78986 * 179.97438 * 9 7 2 11 11 C 1.38317 * 119.13051 * 180.02562 * 10 9 7 12 12 C 1.38681 * 118.67186 * 359.72634 * 11 10 9 13 13 C 1.39647 * 119.49393 * 0.55421 * 12 11 10 14 14 N 1.39248 * 119.57594 * 179.70770 * 13 12 11 15 15 C 1.34776 * 120.00532 * 174.29242 * 14 13 12 16 16 O 1.21576 * 119.99253 * 5.00569 * 15 14 13 17 17 N 1.34769 * 120.00571 * 185.00485 * 15 14 13 18 18 C 1.46498 * 120.00185 * 179.72123 * 17 15 14 19 19 C 1.53007 * 109.47112 * 180.27867 * 18 17 15 20 20 H 1.08997 * 109.46854 * 304.99761 * 19 18 17 21 21 C 1.52998 * 109.46933 * 65.00018 * 19 18 17 22 22 O 1.42904 * 109.46707 * 183.73084 * 21 19 18 23 23 C 1.53003 * 109.46809 * 184.99993 * 19 18 17 24 24 C 1.53001 * 109.47038 * 65.61059 * 23 19 18 25 25 C 1.52997 * 109.46948 * 179.97438 * 24 23 19 26 26 C 1.53000 * 109.47151 * 60.00192 * 25 24 23 27 27 C 1.53005 * 109.46697 * 299.99755 * 26 25 24 28 28 C 1.52993 * 109.47228 * 305.60830 * 23 19 18 29 29 N 1.31930 * 120.85111 * 359.43497 * 13 12 11 30 30 H 0.97001 * 119.99649 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.43555 * 359.97347 * 10 9 7 32 32 H 1.08000 * 120.66093 * 180.02562 * 11 10 9 33 33 H 1.08000 * 120.25653 * 180.28748 * 12 11 10 34 34 H 0.97005 * 119.99908 * 354.28365 * 14 13 12 35 35 H 0.97003 * 119.99576 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.47486 * 300.27763 * 18 17 15 37 37 H 1.08996 * 109.47316 * 60.27919 * 18 17 15 38 38 H 1.08996 * 109.47369 * 303.72516 * 21 19 18 39 39 H 1.09003 * 109.47204 * 63.73388 * 21 19 18 40 40 H 0.96705 * 113.99509 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.46516 * 185.60732 * 23 19 18 42 42 H 1.09000 * 109.47072 * 299.99695 * 24 23 19 43 43 H 1.09002 * 109.47094 * 59.99401 * 24 23 19 44 44 H 1.09000 * 109.47239 * 299.99903 * 25 24 23 45 45 H 1.08998 * 109.47029 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.46860 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.47285 * 59.99739 * 26 25 24 48 48 H 1.09000 * 109.47240 * 300.00011 * 27 26 25 49 49 H 1.09002 * 109.46754 * 180.02562 * 27 26 25 50 50 H 1.08998 * 109.47212 * 300.00116 * 28 23 19 51 51 H 1.09000 * 109.47157 * 60.00137 * 28 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6517 -0.0016 11 6 1.3030 -4.8415 -0.0022 12 6 -0.0830 -4.7934 0.0042 13 6 -0.7280 -3.5548 -0.0008 14 7 -2.1196 -3.5046 -0.0006 15 6 -2.7512 -2.3192 0.1107 16 8 -2.1090 -1.2869 0.1193 17 7 -4.0944 -2.2781 0.2125 18 6 -4.7803 -0.9900 0.3396 19 6 -6.2888 -1.2236 0.4444 20 1 -6.6253 -1.8128 -0.4086 21 6 -6.5995 -1.9771 1.7392 22 8 -7.9967 -2.2716 1.7954 23 6 -7.0142 0.1236 0.4516 24 6 -6.8179 0.8157 -0.8987 25 6 -7.5438 2.1625 -0.8917 26 6 -6.9727 3.0439 0.2210 27 6 -7.1690 2.3516 1.5713 28 6 -6.4426 1.0046 1.5642 29 7 -0.0359 -2.4317 -0.0003 30 1 -0.4850 0.8401 0.0004 31 1 3.0883 -3.6560 -0.0029 32 1 1.8212 -5.7891 -0.0026 33 1 -0.6592 -5.7069 0.0087 34 1 -2.6345 -4.3228 -0.0806 35 1 -4.6066 -3.1019 0.2060 36 1 -4.4290 -0.4780 1.2354 37 1 -4.5676 -0.3770 -0.5362 38 1 -6.0310 -2.9067 1.7639 39 1 -6.3237 -1.3596 2.5940 40 1 -8.2662 -2.7494 2.5918 41 1 -8.0781 -0.0376 0.6260 42 1 -5.7541 0.9768 -1.0732 43 1 -7.2251 0.1880 -1.6914 44 1 -8.6076 2.0010 -0.7174 45 1 -7.4036 2.6558 -1.8535 46 1 -7.4902 4.0032 0.2262 47 1 -5.9089 3.2054 0.0467 48 1 -8.2328 2.1902 1.7455 49 1 -6.7626 2.9797 2.3640 50 1 -6.5825 0.5115 2.5261 51 1 -5.3788 1.1657 1.3897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:23 Heat of formation + Delta-G solvation = -67.712239 kcal Electronic energy + Delta-G solvation = -31381.978542 eV Core-core repulsion = 27280.195539 eV Total energy + Delta-G solvation = -4101.783003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.24958 -40.41002 -39.35627 -37.67531 -36.20839 -35.66972 -34.80943 -33.52527 -32.17603 -31.65455 -30.87123 -29.31251 -27.53070 -26.57187 -24.39509 -23.70396 -23.36062 -22.98780 -21.53284 -21.18353 -20.13458 -19.71120 -18.73595 -18.16128 -17.92785 -16.77932 -16.59116 -16.42995 -16.25818 -16.10265 -15.69048 -15.57798 -15.16333 -15.01787 -14.89786 -14.77049 -14.65724 -14.24046 -14.08944 -13.67691 -13.43930 -13.28777 -13.19192 -12.98910 -12.87689 -12.70909 -12.53897 -12.51264 -12.29827 -12.09962 -11.82051 -11.75981 -11.73971 -11.47221 -11.24717 -10.98178 -10.86730 -10.84726 -10.77910 -10.68285 -9.89626 -9.78686 -9.08870 -8.76159 -8.00457 -6.39297 0.98653 1.30226 1.39542 1.51608 1.54250 1.83292 2.27478 2.58984 3.05804 3.26079 3.39384 3.64915 3.78571 3.84083 4.03097 4.09618 4.17753 4.27846 4.37129 4.40502 4.45813 4.52679 4.57847 4.66255 4.67178 4.71872 4.73313 4.74974 4.78848 4.86179 4.95046 4.98500 5.08366 5.09317 5.10836 5.21446 5.28952 5.29793 5.32541 5.34269 5.39861 5.49097 5.62096 5.68626 5.73299 5.87959 5.94347 6.05401 6.33347 6.44346 6.84032 6.92141 7.09539 7.27766 8.04007 8.40475 8.60152 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.003200 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.005874 B = 8748.504673 C =10918.234416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.365 3.635 14 N -0.662 5.662 15 C 0.656 3.344 16 O -0.515 6.515 17 N -0.737 5.737 18 C 0.156 3.844 19 C -0.082 4.082 20 H 0.086 0.914 21 C 0.083 3.917 22 O -0.582 6.582 23 C -0.062 4.062 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.121 4.121 29 N -0.507 5.507 30 H 0.268 0.732 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.417 0.583 35 H 0.403 0.597 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.396 0.604 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.914 -0.615 2.784 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.215 4.215 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.354 3.646 16 O -0.382 6.382 17 N -0.398 5.398 18 C 0.031 3.969 19 C -0.101 4.101 20 H 0.105 0.895 21 C 0.005 3.995 22 O -0.390 6.390 23 C -0.081 4.081 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.159 4.159 29 N -0.227 5.227 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.238 0.762 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.245 0.755 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.983 1.663 2.244 20.177 hybrid contribution 0.729 -1.185 0.424 1.455 sum -19.253 0.478 2.668 19.443 Atomic orbital electron populations 1.70564 1.07089 1.27734 1.24848 1.27023 0.96006 1.03866 0.94606 0.85386 0.79194 0.77081 0.79129 1.19096 1.19921 1.17901 1.19886 0.94388 0.90497 1.44990 0.89707 1.18879 0.87953 0.93383 0.88628 1.21805 0.99180 0.93864 1.20585 1.21025 0.93519 0.97313 0.93956 1.20914 0.95131 0.95560 1.25554 1.18842 0.84208 0.91055 0.93369 1.42400 1.03884 1.08979 1.75968 1.16732 0.82758 0.84900 0.80206 1.91382 1.63976 1.31660 1.51227 1.45073 1.03903 1.10047 1.80798 1.21113 0.90586 0.84264 1.00894 1.21302 0.92196 0.97816 0.98773 0.89536 1.22152 0.82185 0.98282 0.96890 1.86405 1.23905 1.80273 1.48409 1.20955 1.00132 0.92127 0.94897 1.21685 1.00221 0.96912 0.97046 1.21494 1.00051 0.95119 0.98556 1.21563 1.00562 0.98815 0.95085 1.21503 1.00818 0.95791 0.97128 1.21722 0.99381 0.96119 0.98644 1.68659 1.07210 1.25385 1.21403 0.92127 0.87822 0.84484 0.85028 0.74616 0.76154 0.93191 0.92975 0.93007 0.93253 0.75462 0.89630 0.93317 0.91578 0.91108 0.91953 0.91188 0.93423 0.91132 0.92109 0.91595 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.38 8.99 21.84 0.20 -40.18 16 2 C 0.01 0.60 5.50 85.29 0.47 1.07 16 3 Si 0.97 41.64 29.56 68.60 2.03 43.67 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.47 -27.16 9.14 23.46 0.21 -26.94 16 8 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.24 13.99 6.55 40.20 0.26 14.25 16 10 C -0.33 -17.03 9.83 22.87 0.22 -16.80 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.27 16 12 C -0.35 -14.90 9.95 22.72 0.23 -14.68 16 13 C 0.37 17.99 7.43 133.24 0.99 18.97 16 14 N -0.66 -25.95 5.39 -322.14 -1.74 -27.68 16 15 C 0.66 27.26 8.52 179.06 1.53 28.78 16 16 O -0.51 -27.53 12.10 -3.96 -0.05 -27.58 16 17 N -0.74 -21.28 5.25 -478.56 -2.51 -23.79 16 18 C 0.16 4.26 4.25 86.38 0.37 4.63 16 19 C -0.08 -1.61 1.91 -10.79 -0.02 -1.63 16 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 21 C 0.08 1.40 6.20 71.98 0.45 1.84 16 22 O -0.58 -8.88 13.05 -148.98 -1.94 -10.82 16 23 C -0.06 -1.18 1.91 -10.79 -0.02 -1.20 16 24 C -0.12 -2.40 4.98 30.59 0.15 -2.25 16 25 C -0.11 -1.99 5.92 30.59 0.18 -1.80 16 26 C -0.12 -2.21 5.92 30.60 0.18 -2.03 16 27 C -0.11 -2.02 5.92 30.61 0.18 -1.84 16 28 C -0.12 -2.42 4.47 30.61 0.14 -2.28 16 29 N -0.51 -29.80 5.74 -186.37 -1.07 -30.87 16 30 H 0.27 15.01 8.29 -92.71 -0.77 14.24 16 31 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 32 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.42 11.84 8.72 -92.70 -0.81 11.03 16 35 H 0.40 8.48 7.67 -92.71 -0.71 7.76 16 36 H 0.05 1.56 6.65 -2.39 -0.02 1.54 16 37 H 0.05 1.65 6.37 -2.39 -0.02 1.64 16 38 H 0.05 0.82 7.10 -2.39 -0.02 0.80 16 39 H 0.05 0.86 6.42 -2.39 -0.02 0.84 16 40 H 0.40 2.73 9.12 -74.05 -0.68 2.06 16 41 H 0.09 1.60 7.64 -2.38 -0.02 1.58 16 42 H 0.05 1.17 6.48 -2.39 -0.02 1.15 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.07 1.24 6.51 -2.39 -0.02 1.23 16 51 H 0.05 1.18 6.45 -2.39 -0.02 1.17 16 Total: -1.00 -77.72 394.52 -0.56 -78.27 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -1.22 Total: 42.16 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.75 Total: -3.18 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.12 Total: -122.52 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.99 Total: -38.40 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -77.72 -0.56 -78.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.563 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds