Wall clock time and date at job start Wed Apr 1 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99938 * 2 1 4 4 H 1.48498 * 109.47387 * 271.23522 * 3 2 1 5 5 H 1.48507 * 109.46788 * 31.23076 * 3 2 1 6 6 H 1.48497 * 109.47542 * 151.23054 * 3 2 1 7 7 C 1.38814 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99765 * 345.86645 * 7 2 1 9 9 N 1.36938 * 119.99674 * 165.87402 * 7 2 1 10 10 C 1.46961 * 120.59680 * 327.58981 * 9 7 2 11 11 C 1.53375 * 108.63753 * 235.21434 * 10 9 7 12 12 N 1.46964 * 108.62828 * 310.57053 * 11 10 9 13 13 C 1.34775 * 120.59633 * 235.20245 * 12 11 10 14 14 O 1.21702 * 120.00328 * 184.73829 * 13 12 11 15 15 C 1.46660 * 119.99894 * 4.73346 * 13 12 11 16 16 C 1.36544 * 125.98980 * 173.57433 * 15 13 12 17 17 C 1.40360 * 106.70912 * 179.97438 * 16 15 13 18 18 C 1.35128 * 107.11386 * 0.02562 * 17 16 15 19 19 C 1.50703 * 125.61586 * 179.73437 * 18 17 16 20 20 N 1.46894 * 109.47249 * 89.99478 * 19 18 17 21 21 C 1.46849 * 111.00423 * 294.20957 * 20 19 18 22 22 C 1.53032 * 109.52737 * 174.16223 * 21 20 19 23 23 C 1.53116 * 109.27986 * 59.18030 * 22 21 20 24 24 C 1.53120 * 109.16066 * 302.34595 * 23 22 21 25 25 C 1.46849 * 111.00064 * 170.00378 * 20 19 18 26 26 O 1.33930 * 108.76892 * 359.97438 * 18 17 16 27 27 C 1.46964 * 118.81149 * 55.48437 * 12 11 10 28 28 C 1.46968 * 120.59104 * 147.57484 * 9 7 2 29 29 H 0.97000 * 120.00321 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.61231 * 115.46570 * 10 9 7 31 31 H 1.09006 * 109.61018 * 354.95200 * 10 9 7 32 32 H 1.08995 * 109.61060 * 190.83269 * 11 10 9 33 33 H 1.08997 * 109.61427 * 70.31624 * 11 10 9 34 34 H 1.08003 * 126.64522 * 359.94173 * 16 15 13 35 35 H 1.08003 * 126.43928 * 180.02562 * 17 16 15 36 36 H 1.08994 * 109.47380 * 209.99729 * 19 18 17 37 37 H 1.09005 * 109.46768 * 329.99557 * 19 18 17 38 38 H 1.09004 * 109.46127 * 294.18135 * 21 20 19 39 39 H 1.09001 * 109.46024 * 54.14503 * 21 20 19 40 40 H 1.09007 * 109.49956 * 299.23694 * 22 21 20 41 41 H 1.09007 * 109.53685 * 179.14250 * 22 21 20 42 42 H 1.09003 * 109.52405 * 182.43964 * 23 22 21 43 43 H 1.09004 * 109.52138 * 62.25434 * 23 22 21 44 44 H 1.08997 * 109.50374 * 297.71497 * 24 23 22 45 45 H 1.08994 * 109.50225 * 177.59408 * 24 23 22 46 46 H 1.09005 * 109.46067 * 305.85411 * 25 20 19 47 47 H 1.08998 * 109.46444 * 65.82421 * 25 20 19 48 48 H 1.08999 * 109.61672 * 64.26502 * 27 12 11 49 49 H 1.09009 * 109.61142 * 184.77271 * 27 12 11 50 50 H 1.09001 * 109.60348 * 244.53092 * 28 9 7 51 51 H 1.08995 * 109.60984 * 5.04573 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4716 2.0616 -1.3997 5 1 1.4608 2.6450 0.7260 6 1 3.5605 1.4330 0.6738 7 6 2.0103 -1.2021 -0.0005 8 1 1.4948 -2.1234 0.2274 9 7 3.3486 -1.2198 -0.2900 10 6 3.9223 -0.2519 -1.2355 11 6 4.6591 -1.0219 -2.3385 12 7 5.5476 -2.0088 -1.7088 13 6 6.8647 -2.0264 -1.9937 14 8 7.5753 -2.9009 -1.5339 15 6 7.4418 -0.9916 -2.8581 16 6 8.7695 -0.8188 -3.1263 17 6 8.8662 0.2806 -3.9935 18 6 7.6094 0.7255 -4.2134 19 6 7.2328 1.8977 -5.0824 20 7 7.0028 1.4343 -6.4572 21 6 8.2451 0.9321 -7.0581 22 6 7.9412 0.3262 -8.4301 23 6 7.3144 1.3965 -9.3278 24 6 6.0488 1.9373 -8.6566 25 6 6.4076 2.4965 -7.2780 26 8 6.7539 -0.0438 -3.5278 27 6 4.9730 -2.9803 -0.7676 28 6 4.2371 -2.2068 0.3396 29 1 -0.4850 0.8400 -0.0004 30 1 4.6232 0.3987 -0.7128 31 1 3.1244 0.3453 -1.6769 32 1 5.2491 -0.3282 -2.9373 33 1 3.9357 -1.5334 -2.9734 34 1 9.5868 -1.4127 -2.7446 35 1 9.7745 0.6934 -4.4072 36 1 6.3230 2.3581 -4.6972 37 1 8.0410 2.6292 -5.0759 38 1 8.9514 1.7545 -7.1726 39 1 8.6784 0.1688 -6.4118 40 1 7.2456 -0.5051 -8.3147 41 1 8.8655 -0.0329 -8.8828 42 1 7.0565 0.9580 -10.2919 43 1 8.0247 2.2101 -9.4751 44 1 5.3234 1.1314 -8.5449 45 1 5.6214 2.7298 -9.2709 46 1 5.5063 2.8695 -6.7915 47 1 7.1225 3.3115 -7.3916 48 1 4.2714 -3.6282 -1.2932 49 1 5.7703 -3.5803 -0.3288 50 1 4.9605 -1.6952 0.9745 51 1 3.6471 -2.9006 0.9385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:58 Heat of formation + Delta-G solvation = 9.125947 kcal Electronic energy + Delta-G solvation = -31768.970657 eV Core-core repulsion = 27670.519608 eV Total energy + Delta-G solvation = -4098.451049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.86904 -40.98248 -39.86212 -38.75853 -35.85293 -35.14123 -34.06752 -33.58098 -32.53597 -31.81109 -31.12034 -29.14225 -27.59800 -25.58603 -24.98951 -24.26905 -23.98000 -23.14618 -22.51274 -21.73497 -20.88315 -20.58862 -19.25086 -18.09742 -17.77638 -17.69292 -17.00141 -16.91331 -16.69785 -16.11961 -15.92242 -15.82652 -15.56313 -15.37333 -15.29575 -15.04989 -14.71018 -14.34397 -14.29276 -14.23834 -14.18908 -14.02273 -13.93703 -13.60783 -13.38230 -13.16204 -12.88675 -12.61014 -12.42989 -12.22863 -12.11762 -12.04643 -11.87365 -11.62001 -11.59475 -11.32453 -11.31523 -11.28797 -11.01041 -10.88165 -10.09448 -9.63587 -9.28523 -8.86615 -8.19096 -5.61043 -0.05680 1.25625 1.26381 1.39365 1.43711 1.48707 1.91094 2.05721 2.37691 2.94751 3.06823 3.22569 3.29395 3.67121 3.87401 3.89542 3.95860 3.99261 4.03734 4.06600 4.17989 4.24695 4.28070 4.33839 4.39995 4.45588 4.46794 4.54265 4.58754 4.62512 4.66556 4.69589 4.72040 4.81958 4.85324 4.86287 4.94936 5.03299 5.05714 5.08075 5.09108 5.24613 5.31758 5.34647 5.43309 5.48766 5.84047 5.84917 6.01055 6.09493 6.12631 6.24146 6.82657 6.85592 7.52446 7.95030 9.00241 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.003349 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.873491 B = 8359.283137 C =10041.582528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.028 4.028 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.308 1.308 6 H -0.266 1.266 7 C -0.254 4.254 8 H 0.056 0.944 9 N -0.620 5.620 10 C 0.112 3.888 11 C 0.087 3.913 12 N -0.594 5.594 13 C 0.595 3.405 14 O -0.560 6.560 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.206 4.206 18 C 0.024 3.976 19 C 0.127 3.873 20 N -0.554 5.554 21 C 0.049 3.951 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.118 4.118 25 C 0.057 3.943 26 O -0.159 6.159 27 C 0.103 3.897 28 C 0.134 3.866 29 H 0.264 0.736 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.100 0.900 50 H 0.033 0.967 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.033 6.753 -18.395 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.224 4.224 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.237 1.237 6 H -0.191 1.191 7 C -0.383 4.383 8 H 0.074 0.926 9 N -0.344 5.344 10 C -0.013 4.013 11 C -0.036 4.036 12 N -0.325 5.325 13 C 0.385 3.615 14 O -0.442 6.442 15 C -0.153 4.153 16 C -0.131 4.131 17 C -0.226 4.226 18 C -0.028 4.028 19 C 0.000 4.000 20 N -0.280 5.280 21 C -0.078 4.078 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.070 4.070 26 O -0.056 6.056 27 C -0.020 4.020 28 C 0.009 3.991 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.051 0.949 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.556 6.012 -18.099 28.040 hybrid contribution 0.196 1.097 0.400 1.184 sum 20.752 7.108 -17.699 28.185 Atomic orbital electron populations 1.69901 1.07324 1.27408 1.55465 1.26018 0.95888 1.01069 0.99378 0.85906 0.78286 0.79991 0.78156 1.19109 1.23724 1.19108 1.18841 0.83499 0.93188 1.42765 0.92647 1.44399 1.04674 1.37434 1.47932 1.21755 0.96304 0.92356 0.90918 1.22809 0.93552 0.91774 0.95475 1.48005 1.06903 1.33660 1.43886 1.17010 0.81555 0.83194 0.79720 1.90797 1.60597 1.37413 1.55394 1.21862 0.92360 0.95982 1.05105 1.22142 0.94744 0.98404 0.97855 1.21822 0.98353 0.98918 1.03466 1.23311 0.88601 0.95191 0.95726 1.20675 1.03760 0.89304 0.86253 1.61787 1.28242 1.37002 1.00930 1.22236 0.89921 0.99495 0.96134 1.21583 1.01181 0.98349 0.94432 1.21575 0.97075 0.98492 0.98485 1.21598 0.98042 1.00997 0.94950 1.22142 0.99359 0.91660 0.93876 1.84129 1.36648 1.35550 1.49297 1.22292 0.97969 0.90853 0.90925 1.21535 0.92495 0.91751 0.93357 0.92717 0.94881 0.91259 0.86039 0.91018 0.81478 0.79810 0.88402 0.88523 0.93264 0.90906 0.92933 0.90342 0.91383 0.91291 0.92597 0.90092 0.90485 0.93254 0.90855 0.88182 0.94924 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.12 13.97 21.65 0.30 -58.82 16 2 C -0.03 -1.62 5.32 84.86 0.45 -1.17 16 3 Si 0.95 45.65 24.32 68.60 1.67 47.31 16 4 H -0.26 -11.72 6.64 99.48 0.66 -11.06 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.27 -12.54 6.42 99.48 0.64 -11.90 16 7 C -0.25 -14.19 10.04 84.03 0.84 -13.34 16 8 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.62 -29.18 2.70 -697.34 -1.88 -31.06 16 10 C 0.11 4.76 4.32 86.42 0.37 5.13 16 11 C 0.09 3.13 6.49 86.42 0.56 3.69 16 12 N -0.59 -21.30 2.94 -821.86 -2.42 -23.72 16 13 C 0.60 20.92 7.66 86.44 0.66 21.58 16 14 O -0.56 -21.62 16.29 -4.36 -0.07 -21.70 16 15 C -0.10 -3.04 6.86 24.07 0.17 -2.88 16 16 C -0.11 -2.66 10.63 22.39 0.24 -2.42 16 17 C -0.21 -3.78 9.21 22.07 0.20 -3.58 16 18 C 0.02 0.50 6.22 24.97 0.16 0.65 16 19 C 0.13 1.94 5.50 85.56 0.47 2.41 16 20 N -0.55 -8.88 4.65 -900.92 -4.19 -13.07 16 21 C 0.05 0.67 5.26 86.32 0.45 1.13 16 22 C -0.12 -1.54 6.09 30.64 0.19 -1.36 16 23 C -0.12 -1.31 6.00 30.67 0.18 -1.13 16 24 C -0.12 -1.48 6.09 30.65 0.19 -1.29 16 25 C 0.06 0.73 5.46 86.33 0.47 1.20 16 26 O -0.16 -4.42 7.06 -4.98 -0.04 -4.45 16 27 C 0.10 3.61 6.61 86.57 0.57 4.18 16 28 C 0.13 5.31 6.69 86.56 0.58 5.89 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.03 1.40 6.94 -2.39 -0.02 1.38 16 31 H 0.07 3.12 4.54 -2.38 -0.01 3.11 16 32 H 0.12 3.98 3.71 -60.29 -0.22 3.76 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.10 1.52 7.99 -2.39 -0.02 1.50 16 37 H 0.10 0.97 8.12 -2.38 -0.02 0.95 16 38 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.07 1.11 5.97 -2.39 -0.01 1.10 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 1.02 8.02 -2.38 -0.02 1.01 16 47 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 48 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.10 3.29 7.01 -2.38 -0.02 3.28 16 50 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 3.14 7.93 -2.39 -0.02 3.12 16 Total: -1.00 -69.98 388.81 0.73 -69.26 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.59 Total: 17.55 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.76 Total: 18.70 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -8.18 Total: -126.67 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.11 Total: -26.15 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.31 kcal Total: -69.98 0.73 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.381 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds