Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46947 * 265.05537 * 3 2 1 5 5 H 1.48496 * 109.47284 * 25.06049 * 3 2 1 6 6 H 1.48505 * 109.47080 * 145.05910 * 3 2 1 7 7 C 1.38812 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00191 * 346.03006 * 7 2 1 9 9 N 1.36943 * 119.99904 * 166.02112 * 7 2 1 10 10 C 1.47742 * 125.82126 * 142.88068 * 9 7 2 11 11 C 1.54901 * 104.84253 * 155.82880 * 10 9 7 12 12 H 1.09002 * 111.04297 * 279.00587 * 11 10 9 13 13 O 1.42901 * 111.00517 * 155.16321 * 11 10 9 14 14 C 1.55158 * 101.58187 * 37.09291 * 11 10 9 15 15 H 1.08996 * 110.87337 * 82.93502 * 14 11 10 16 16 C 1.53003 * 110.72109 * 206.13477 * 14 11 10 17 17 N 1.46501 * 109.47481 * 179.97438 * 16 14 11 18 18 C 1.34778 * 120.00177 * 179.97438 * 17 16 14 19 19 O 1.21693 * 119.99458 * 354.75122 * 18 17 16 20 20 C 1.46671 * 119.99929 * 174.75060 * 18 17 16 21 21 C 1.37878 * 126.23390 * 5.25992 * 20 18 17 22 22 C 1.39835 * 107.08675 * 179.97438 * 21 20 18 23 23 C 1.35453 * 107.86301 * 0.02562 * 22 21 20 24 24 N 1.35530 * 108.87293 * 359.73093 * 23 22 21 25 25 C 1.46500 * 125.68293 * 180.30812 * 24 23 22 26 26 C 1.54268 * 110.03374 * 61.98193 * 25 24 23 27 27 C 1.54957 * 104.16302 * 217.14406 * 26 25 24 28 28 C 1.54886 * 102.77899 * 37.88691 * 27 26 25 29 29 C 1.53880 * 110.03097 * 304.77002 * 25 24 23 30 30 C 1.47019 * 125.64821 * 322.96592 * 9 7 2 31 31 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.29072 * 37.02088 * 10 9 7 33 33 H 1.09003 * 110.52538 * 274.75585 * 10 9 7 34 34 H 0.96701 * 113.99700 * 67.80535 * 13 11 10 35 35 H 1.09002 * 109.47002 * 299.97931 * 16 14 11 36 36 H 1.09007 * 109.47253 * 59.97208 * 16 14 11 37 37 H 0.97005 * 119.99507 * 0.02562 * 17 16 14 38 38 H 1.08000 * 126.45598 * 0.03430 * 21 20 18 39 39 H 1.07993 * 126.06715 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.56524 * 179.97438 * 23 22 21 41 41 H 1.08994 * 110.02216 * 183.37984 * 25 24 23 42 42 H 1.09008 * 110.48549 * 335.79198 * 26 25 24 43 43 H 1.08998 * 110.48422 * 98.43195 * 26 25 24 44 44 H 1.09007 * 110.72026 * 279.57224 * 27 26 25 45 45 H 1.09000 * 110.92792 * 156.29893 * 27 26 25 46 46 H 1.08999 * 110.48507 * 203.40819 * 28 27 26 47 47 H 1.08998 * 110.59852 * 80.82127 * 28 27 26 48 48 H 1.08995 * 110.03116 * 238.57237 * 29 25 24 49 49 H 1.09005 * 110.02764 * 359.97438 * 29 25 24 50 50 H 1.09010 * 109.88045 * 61.61383 * 30 9 7 51 51 H 1.08995 * 109.88731 * 300.60065 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6021 1.9861 -1.3949 5 1 1.3993 2.6806 0.5930 6 1 3.4916 1.4726 0.8019 7 6 2.0102 -1.2021 0.0005 8 1 1.4942 -2.1235 0.2267 9 7 3.3492 -1.2198 -0.2859 10 6 4.3582 -2.0914 0.3505 11 6 5.5056 -2.1920 -0.6853 12 1 5.2751 -2.9293 -1.4543 13 8 6.7476 -2.4937 -0.0462 14 6 5.5184 -0.7575 -1.2763 15 1 6.0904 -0.0809 -0.6414 16 6 6.0784 -0.7636 -2.7002 17 7 6.0775 0.6018 -3.2312 18 6 6.5310 0.8403 -4.4778 19 8 7.0291 -0.0606 -5.1268 20 6 6.4240 2.1857 -5.0522 21 6 5.9795 3.3168 -4.4010 22 6 6.0426 4.3704 -5.3182 23 6 6.5135 3.8755 -6.4878 24 7 6.7545 2.5502 -6.3377 25 6 7.2773 1.6542 -7.3721 26 6 8.6856 2.1115 -7.8050 27 6 8.7202 1.8405 -9.3303 28 6 7.2860 2.2172 -9.7777 29 6 6.3878 1.7208 -8.6260 30 6 4.0242 -0.3715 -1.2790 31 1 -0.4850 0.8401 -0.0004 32 1 3.9365 -3.0772 0.5464 33 1 4.7207 -1.6439 1.2759 34 1 6.7869 -3.3800 0.3385 35 1 7.0983 -1.1480 -2.6878 36 1 5.4581 -1.3995 -3.3319 37 1 5.7512 1.3343 -2.6853 38 1 5.6464 3.3778 -3.3755 39 1 5.7644 5.3964 -5.1281 40 1 6.6748 4.4448 -7.3913 41 1 7.3159 0.6320 -6.9957 42 1 8.8204 3.1743 -7.6033 43 1 9.4504 1.5256 -7.2952 44 1 8.9236 0.7885 -9.5305 45 1 9.4575 2.4752 -9.8219 46 1 7.0304 1.7084 -10.7072 47 1 7.1925 3.2966 -9.8965 48 1 5.9953 0.7309 -8.8584 49 1 5.5668 2.4196 -8.4645 50 1 3.9121 0.6783 -1.0073 51 1 3.5980 -0.5461 -2.2668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958521241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = -16.023822 kcal Electronic energy + Delta-G solvation = -31165.247209 eV Core-core repulsion = 27065.705584 eV Total energy + Delta-G solvation = -4099.541625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67888 -39.40649 -38.37340 -37.94028 -35.49478 -34.75638 -32.42073 -31.98528 -30.74012 -29.23451 -29.11739 -27.90174 -27.47919 -25.75097 -23.75641 -22.36188 -21.63484 -21.11682 -20.71871 -20.33854 -20.15532 -19.17013 -17.92146 -17.36408 -17.03011 -16.11223 -16.01964 -15.70825 -15.58682 -15.26916 -14.78922 -14.53616 -14.25594 -13.98024 -13.80372 -13.68840 -13.61430 -13.45627 -13.04652 -12.88048 -12.75264 -12.43460 -12.10364 -12.04672 -11.86438 -11.73699 -11.69057 -11.57861 -11.52554 -11.37706 -11.15721 -11.02912 -10.92546 -10.63682 -10.42557 -10.00916 -9.87993 -9.70048 -9.53800 -9.06837 -8.81631 -8.62441 -8.27273 -6.90569 -6.04395 -3.52661 1.41711 2.51920 2.66305 3.26582 3.30664 3.40064 3.40554 3.44955 4.09884 4.17615 4.30884 4.46040 4.49022 4.67479 4.79960 4.86570 4.94074 4.96642 5.00325 5.04969 5.08465 5.15573 5.19531 5.23519 5.28882 5.35606 5.38495 5.46574 5.47027 5.60437 5.63214 5.65020 5.75390 5.79434 5.82760 5.87484 5.97328 5.98692 6.12024 6.13927 6.33093 6.40650 6.51118 6.61104 6.65369 6.69154 6.93868 7.14732 7.51746 7.79749 7.85014 8.18974 8.26544 8.75403 9.58028 10.13096 11.11337 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002846 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.950648 B = 9837.540687 C =11075.265144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.102 3.898 11 C 0.097 3.903 12 H 0.071 0.929 13 O -0.564 6.564 14 C -0.107 4.107 15 H 0.090 0.910 16 C 0.137 3.863 17 N -0.713 5.713 18 C 0.590 3.410 19 O -0.555 6.555 20 C -0.051 4.051 21 C -0.140 4.140 22 C -0.207 4.207 23 C 0.015 3.985 24 N -0.399 5.399 25 C 0.109 3.891 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.136 4.136 30 C 0.124 3.876 31 H 0.266 0.734 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.377 0.623 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.027 0.973 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.674 5.273 -15.795 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.725 3.275 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.103 0.897 9 N -0.333 5.333 10 C -0.024 4.024 11 C 0.037 3.963 12 H 0.089 0.911 13 O -0.369 6.369 14 C -0.126 4.126 15 H 0.108 0.892 16 C 0.014 3.986 17 N -0.364 5.364 18 C 0.379 3.621 19 O -0.435 6.435 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.231 4.231 23 C -0.120 4.120 24 N -0.072 5.072 25 C 0.007 3.993 26 C -0.168 4.168 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.174 4.174 30 C 0.000 4.000 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.239 0.761 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.044 0.956 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.022 5.029 -16.668 25.058 hybrid contribution -0.098 0.969 0.554 1.120 sum 17.925 5.998 -16.114 24.838 Atomic orbital electron populations 1.69763 1.05771 1.26935 1.52259 1.25462 0.95271 0.98039 0.97957 0.86715 0.79259 0.83775 0.77791 1.20860 1.22890 1.19885 1.18555 0.80304 0.94055 1.44934 0.89707 1.44529 1.03960 1.44562 1.40263 1.22377 0.89554 0.95912 0.94558 1.22937 0.83748 0.95119 0.94514 0.91132 1.86457 1.35736 1.37987 1.76690 1.22426 0.97838 0.97433 0.94929 0.89173 1.21406 1.01665 0.82258 0.93310 1.45673 1.64642 1.11063 1.14976 1.16957 0.77651 0.86024 0.81490 1.90697 1.45826 1.46328 1.60678 1.20044 1.14455 0.95041 0.86881 1.21407 1.03777 0.91606 0.99877 1.20798 1.09357 0.99640 0.93310 1.21843 1.06026 0.83625 1.00529 1.44167 1.46244 1.07756 1.08988 1.22700 0.93277 0.96219 0.87073 1.22766 0.95552 1.02079 0.96452 1.22488 0.96989 1.01996 0.94589 1.22363 0.94713 1.01120 0.97902 1.22575 0.98303 1.02936 0.93565 1.21774 0.88725 0.95142 0.94374 0.92446 0.93052 0.94709 0.77594 0.90719 0.90931 0.76059 0.83971 0.84110 0.81914 0.84910 0.90744 0.90559 0.90913 0.90964 0.91083 0.91417 0.90303 0.90636 0.95561 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.59 13.97 55.49 0.78 -26.82 16 2 C 0.03 0.97 5.47 -17.43 -0.10 0.87 16 3 Si 0.89 22.30 24.63 -169.99 -4.19 18.11 16 4 H -0.28 -6.68 6.86 56.52 0.39 -6.29 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.71 7.06 56.52 0.40 -6.31 16 7 C -0.25 -7.03 10.54 -15.06 -0.16 -7.19 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 N -0.60 -14.32 2.96 -169.82 -0.50 -14.82 16 10 C 0.10 1.96 6.99 -2.36 -0.02 1.94 16 11 C 0.10 1.54 3.88 -24.59 -0.10 1.44 16 12 H 0.07 1.05 8.05 -51.93 -0.42 0.64 16 13 O -0.56 -7.88 13.47 -35.23 -0.47 -8.35 16 14 C -0.11 -1.78 2.75 -88.78 -0.24 -2.03 16 15 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 16 C 0.14 2.08 5.00 -4.04 -0.02 2.06 16 17 N -0.71 -10.55 5.38 -61.61 -0.33 -10.89 16 18 C 0.59 9.22 7.77 -12.86 -0.10 9.12 16 19 O -0.55 -9.67 14.39 5.20 0.07 -9.60 16 20 C -0.05 -0.72 6.89 -81.98 -0.56 -1.28 16 21 C -0.14 -1.81 10.36 -39.12 -0.41 -2.21 16 22 C -0.21 -2.33 10.81 -39.98 -0.43 -2.76 16 23 C 0.02 0.16 9.71 -16.91 -0.16 -0.01 16 24 N -0.40 -4.84 2.64 -104.63 -0.28 -5.12 16 25 C 0.11 1.17 3.51 -66.81 -0.23 0.93 16 26 C -0.13 -1.12 6.47 -25.03 -0.16 -1.28 16 27 C -0.12 -0.81 6.91 -24.70 -0.17 -0.98 16 28 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 29 C -0.14 -1.19 6.37 -25.61 -0.16 -1.36 16 30 C 0.12 2.59 5.27 -3.07 -0.02 2.58 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.38 3.54 9.12 45.56 0.42 3.95 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.14 8.06 -51.92 -0.42 0.72 16 37 H 0.40 5.58 7.23 -40.82 -0.30 5.28 16 38 H 0.14 1.67 7.45 -52.49 -0.39 1.27 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.76 5.40 -51.93 -0.28 1.48 16 42 H 0.07 0.62 7.42 -51.92 -0.39 0.24 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.70 7.35 -51.93 -0.38 0.32 16 50 H 0.03 0.59 3.46 -51.92 -0.18 0.41 16 51 H 0.04 0.97 7.76 -51.93 -0.40 0.56 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -33.81 399.21 -9.51 -43.31 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.39 Total: 9.28 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.21 Total: -1.13 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.34 Total: -57.64 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.40 Total: -17.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.19 Total: 18.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.81 -9.51 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958521241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.287 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds