Wall clock time and date at job start Wed Apr 1 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46947 * 265.05537 * 3 2 1 5 5 H 1.48496 * 109.47284 * 25.06049 * 3 2 1 6 6 H 1.48505 * 109.47080 * 145.05910 * 3 2 1 7 7 C 1.38812 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00191 * 346.03006 * 7 2 1 9 9 N 1.36943 * 119.99904 * 166.02112 * 7 2 1 10 10 C 1.47742 * 125.82126 * 142.88068 * 9 7 2 11 11 C 1.54901 * 104.84253 * 155.82880 * 10 9 7 12 12 H 1.09002 * 111.04297 * 279.00587 * 11 10 9 13 13 O 1.42901 * 111.00517 * 155.16321 * 11 10 9 14 14 C 1.55158 * 101.58187 * 37.09291 * 11 10 9 15 15 H 1.08996 * 110.87337 * 82.93502 * 14 11 10 16 16 C 1.53003 * 110.72109 * 206.13477 * 14 11 10 17 17 N 1.46501 * 109.47481 * 179.97438 * 16 14 11 18 18 C 1.34778 * 120.00177 * 179.97438 * 17 16 14 19 19 O 1.21693 * 119.99458 * 354.75122 * 18 17 16 20 20 C 1.46671 * 119.99929 * 174.75060 * 18 17 16 21 21 C 1.37878 * 126.23390 * 5.25992 * 20 18 17 22 22 C 1.39835 * 107.08675 * 179.97438 * 21 20 18 23 23 C 1.35453 * 107.86301 * 0.02562 * 22 21 20 24 24 N 1.35530 * 108.87293 * 359.73093 * 23 22 21 25 25 C 1.46500 * 125.68293 * 180.30812 * 24 23 22 26 26 C 1.54268 * 110.03374 * 61.98193 * 25 24 23 27 27 C 1.54957 * 104.16302 * 217.14406 * 26 25 24 28 28 C 1.54886 * 102.77899 * 37.88691 * 27 26 25 29 29 C 1.53880 * 110.03097 * 304.77002 * 25 24 23 30 30 C 1.47019 * 125.64821 * 322.96592 * 9 7 2 31 31 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.29072 * 37.02088 * 10 9 7 33 33 H 1.09003 * 110.52538 * 274.75585 * 10 9 7 34 34 H 0.96701 * 113.99700 * 67.80535 * 13 11 10 35 35 H 1.09002 * 109.47002 * 299.97931 * 16 14 11 36 36 H 1.09007 * 109.47253 * 59.97208 * 16 14 11 37 37 H 0.97005 * 119.99507 * 0.02562 * 17 16 14 38 38 H 1.08000 * 126.45598 * 0.03430 * 21 20 18 39 39 H 1.07993 * 126.06715 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.56524 * 179.97438 * 23 22 21 41 41 H 1.08994 * 110.02216 * 183.37984 * 25 24 23 42 42 H 1.09008 * 110.48549 * 335.79198 * 26 25 24 43 43 H 1.08998 * 110.48422 * 98.43195 * 26 25 24 44 44 H 1.09007 * 110.72026 * 279.57224 * 27 26 25 45 45 H 1.09000 * 110.92792 * 156.29893 * 27 26 25 46 46 H 1.08999 * 110.48507 * 203.40819 * 28 27 26 47 47 H 1.08998 * 110.59852 * 80.82127 * 28 27 26 48 48 H 1.08995 * 110.03116 * 238.57237 * 29 25 24 49 49 H 1.09005 * 110.02764 * 359.97438 * 29 25 24 50 50 H 1.09010 * 109.88045 * 61.61383 * 30 9 7 51 51 H 1.08995 * 109.88731 * 300.60065 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6021 1.9861 -1.3949 5 1 1.3993 2.6806 0.5930 6 1 3.4916 1.4726 0.8019 7 6 2.0102 -1.2021 0.0005 8 1 1.4942 -2.1235 0.2267 9 7 3.3492 -1.2198 -0.2859 10 6 4.3582 -2.0914 0.3505 11 6 5.5056 -2.1920 -0.6853 12 1 5.2751 -2.9293 -1.4543 13 8 6.7476 -2.4937 -0.0462 14 6 5.5184 -0.7575 -1.2763 15 1 6.0904 -0.0809 -0.6414 16 6 6.0784 -0.7636 -2.7002 17 7 6.0775 0.6018 -3.2312 18 6 6.5310 0.8403 -4.4778 19 8 7.0291 -0.0606 -5.1268 20 6 6.4240 2.1857 -5.0522 21 6 5.9795 3.3168 -4.4010 22 6 6.0426 4.3704 -5.3182 23 6 6.5135 3.8755 -6.4878 24 7 6.7545 2.5502 -6.3377 25 6 7.2773 1.6542 -7.3721 26 6 8.6856 2.1115 -7.8050 27 6 8.7202 1.8405 -9.3303 28 6 7.2860 2.2172 -9.7777 29 6 6.3878 1.7208 -8.6260 30 6 4.0242 -0.3715 -1.2790 31 1 -0.4850 0.8401 -0.0004 32 1 3.9365 -3.0772 0.5464 33 1 4.7207 -1.6439 1.2759 34 1 6.7869 -3.3800 0.3385 35 1 7.0983 -1.1480 -2.6878 36 1 5.4581 -1.3995 -3.3319 37 1 5.7512 1.3343 -2.6853 38 1 5.6464 3.3778 -3.3755 39 1 5.7644 5.3964 -5.1281 40 1 6.6748 4.4448 -7.3913 41 1 7.3159 0.6320 -6.9957 42 1 8.8204 3.1743 -7.6033 43 1 9.4504 1.5256 -7.2952 44 1 8.9236 0.7885 -9.5305 45 1 9.4575 2.4752 -9.8219 46 1 7.0304 1.7084 -10.7072 47 1 7.1925 3.2966 -9.8965 48 1 5.9953 0.7309 -8.8584 49 1 5.5668 2.4196 -8.4645 50 1 3.9121 0.6783 -1.0073 51 1 3.5980 -0.5461 -2.2668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958521241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:02 Heat of formation + Delta-G solvation = -39.944446 kcal Electronic energy + Delta-G solvation = -31166.284485 eV Core-core repulsion = 27065.705584 eV Total energy + Delta-G solvation = -4100.578901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.58212 -40.66812 -39.71338 -38.64634 -36.81270 -36.16750 -34.27324 -32.92093 -32.19826 -30.36453 -29.79829 -29.41758 -28.20756 -27.34091 -25.32536 -23.55354 -22.43957 -22.29170 -21.73204 -21.67256 -21.14622 -20.21571 -19.17584 -18.73534 -18.60389 -17.27814 -17.14116 -16.78429 -16.70658 -16.55344 -15.93969 -15.63736 -15.40710 -15.33871 -15.14372 -14.96046 -14.59682 -14.57083 -14.38021 -14.24929 -13.68237 -13.64233 -13.59871 -13.38968 -13.24388 -12.87475 -12.79667 -12.76478 -12.47616 -12.28716 -12.15583 -12.08155 -11.99698 -11.97317 -11.83341 -11.55971 -11.45151 -11.02752 -10.94148 -10.72618 -10.28387 -9.69563 -9.19992 -8.87223 -8.25569 -5.71418 0.40963 1.27041 1.36351 1.47560 1.58689 1.78777 2.25794 2.32128 2.36517 2.92041 3.07878 3.36336 3.42802 3.52922 3.54230 3.65897 3.72879 3.88029 3.95835 4.11093 4.20744 4.25354 4.29024 4.32382 4.38285 4.42288 4.43281 4.43971 4.54265 4.56647 4.65932 4.74396 4.78443 4.79009 4.94316 4.94951 5.04400 5.06333 5.12051 5.14020 5.16518 5.17383 5.25595 5.29833 5.36128 5.77703 5.78623 6.01380 6.08341 6.32027 6.39480 6.70506 6.89665 7.03760 7.42951 8.06823 8.94079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002846 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.950648 B = 9837.540687 C =11075.265144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.024 4.024 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.305 1.305 6 H -0.265 1.265 7 C -0.247 4.247 8 H 0.050 0.950 9 N -0.623 5.623 10 C 0.097 3.903 11 C 0.116 3.884 12 H 0.084 0.916 13 O -0.564 6.564 14 C -0.094 4.094 15 H 0.097 0.903 16 C 0.147 3.853 17 N -0.712 5.712 18 C 0.587 3.413 19 O -0.581 6.581 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.218 4.218 23 C 0.029 3.971 24 N -0.402 5.402 25 C 0.103 3.897 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.133 4.133 30 C 0.123 3.877 31 H 0.266 0.734 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.400 0.600 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.197 0.803 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.020 0.980 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.224 7.027 -17.385 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.221 4.221 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.233 1.233 6 H -0.190 1.190 7 C -0.376 4.376 8 H 0.068 0.932 9 N -0.352 5.352 10 C -0.028 4.028 11 C 0.056 3.944 12 H 0.102 0.898 13 O -0.371 6.371 14 C -0.113 4.113 15 H 0.116 0.884 16 C 0.024 3.976 17 N -0.362 5.362 18 C 0.377 3.623 19 O -0.464 6.464 20 C -0.201 4.201 21 C -0.171 4.171 22 C -0.242 4.242 23 C -0.107 4.107 24 N -0.075 5.075 25 C 0.001 3.999 26 C -0.164 4.164 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.171 4.171 30 C -0.002 4.002 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.250 0.750 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.214 0.786 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.037 0.963 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.615 6.748 -18.243 28.343 hybrid contribution -0.889 0.312 1.069 1.424 sum 19.727 7.060 -17.175 27.092 Atomic orbital electron populations 1.69899 1.07457 1.27731 1.54611 1.26141 0.95946 1.01587 0.98408 0.85720 0.77915 0.79229 0.78757 1.18906 1.23339 1.19003 1.18452 0.82467 0.92906 1.43740 0.93209 1.44614 1.03350 1.45580 1.41623 1.22556 0.89762 0.95105 0.95370 1.22630 0.83243 0.94997 0.93561 0.89779 1.86423 1.33958 1.40097 1.76669 1.22287 0.94794 0.98152 0.96057 0.88440 1.21247 1.01681 0.82550 0.92132 1.45643 1.64575 1.11021 1.14997 1.17241 0.77118 0.86583 0.81396 1.90682 1.47143 1.47309 1.61289 1.19996 1.17170 0.94650 0.88294 1.21668 1.03139 0.91814 1.00517 1.21136 1.09526 1.00344 0.93147 1.22435 1.03848 0.82883 1.01490 1.44358 1.45988 1.08558 1.08564 1.22744 0.95084 0.94730 0.87295 1.22734 0.93698 1.02080 0.97840 1.22485 0.97637 1.02385 0.92968 1.22355 0.93755 1.02055 0.97155 1.22554 0.98307 1.02607 0.93622 1.21803 0.91220 0.94221 0.92931 0.92511 0.92579 0.94880 0.74964 0.89978 0.91683 0.75486 0.83368 0.81939 0.78589 0.88013 0.90067 0.91754 0.91104 0.89092 0.89999 0.89959 0.91092 0.91012 0.96265 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.97 21.65 0.30 -59.54 16 2 C -0.02 -1.43 5.47 84.86 0.46 -0.97 16 3 Si 0.96 46.34 24.63 68.60 1.69 48.03 16 4 H -0.26 -11.84 6.86 99.48 0.68 -11.16 16 5 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 6 H -0.26 -12.35 7.06 99.48 0.70 -11.65 16 7 C -0.25 -14.18 10.54 84.03 0.89 -13.30 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 9 N -0.62 -29.43 2.96 -691.19 -2.04 -31.48 16 10 C 0.10 3.63 6.99 86.79 0.61 4.23 16 11 C 0.12 3.43 3.88 31.98 0.12 3.55 16 12 H 0.08 2.31 8.05 -2.39 -0.02 2.29 16 13 O -0.56 -13.94 13.47 -148.98 -2.01 -15.95 16 14 C -0.09 -2.95 2.75 -9.60 -0.03 -2.98 16 15 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 16 C 0.15 4.29 5.00 86.38 0.43 4.72 16 17 N -0.71 -20.59 5.38 -467.07 -2.51 -23.11 16 18 C 0.59 18.36 7.77 86.44 0.67 19.03 16 19 O -0.58 -20.68 14.39 -4.33 -0.06 -20.74 16 20 C -0.09 -2.45 6.89 40.35 0.28 -2.17 16 21 C -0.14 -3.54 10.36 22.57 0.23 -3.30 16 22 C -0.22 -4.37 10.81 22.01 0.24 -4.13 16 23 C 0.03 0.54 9.71 83.48 0.81 1.35 16 24 N -0.40 -9.33 2.64 -484.93 -1.28 -10.61 16 25 C 0.10 2.15 3.51 45.72 0.16 2.31 16 26 C -0.13 -1.98 6.47 31.69 0.21 -1.77 16 27 C -0.12 -1.26 6.91 31.91 0.22 -1.04 16 28 C -0.12 -1.19 6.83 31.67 0.22 -0.98 16 29 C -0.13 -2.17 6.37 31.32 0.20 -1.97 16 30 C 0.12 5.00 5.27 86.73 0.46 5.46 16 31 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.40 6.11 9.12 -74.06 -0.68 5.43 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.01 8.06 -2.38 -0.02 1.99 16 37 H 0.41 10.88 7.23 -92.70 -0.67 10.21 16 38 H 0.15 3.28 7.45 -2.91 -0.02 3.26 16 39 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.10 2.80 5.40 -2.39 -0.01 2.79 16 42 H 0.08 1.16 7.42 -2.38 -0.02 1.15 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.22 7.35 -2.38 -0.02 1.20 16 50 H 0.02 0.84 3.46 -2.38 -0.01 0.83 16 51 H 0.03 1.45 7.76 -2.39 -0.02 1.43 16 Total: -1.00 -75.30 399.21 -0.17 -75.47 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.42 Total: 29.88 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.18 Total: 8.05 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.54 Total: -124.74 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -2.07 Total: -36.69 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.69 Total: 48.03 kcal Total: -75.30 -0.17 -75.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958521241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.523 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds