Wall clock time and date at job start Wed Apr 1 2020 04:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47325 * 60.00075 * 3 2 1 6 6 H 1.48498 * 109.47089 * 300.00328 * 3 2 1 7 7 C 1.38808 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 155.54525 * 7 2 1 9 9 N 1.36935 * 119.99819 * 335.54420 * 7 2 1 10 10 C 1.48147 * 127.83869 * 158.37094 * 9 7 2 11 11 C 1.54795 * 104.41932 * 140.36541 * 10 9 7 12 12 H 1.08994 * 118.33917 * 244.38936 * 11 10 9 13 13 C 1.54294 * 104.91357 * 24.17151 * 11 10 9 14 14 H 1.08996 * 121.81165 * 222.87742 * 13 11 10 15 15 C 1.48149 * 127.83980 * 338.69653 * 9 7 2 16 16 C 1.52999 * 61.49942 * 114.01597 * 13 11 10 17 17 H 1.09006 * 117.44249 * 251.47874 * 16 13 11 18 18 N 1.46502 * 117.44570 * 106.72964 * 16 13 11 19 19 C 1.34776 * 119.99950 * 154.99702 * 18 16 13 20 20 O 1.21285 * 120.00012 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00189 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.49964 * 299.93809 * 21 19 18 23 23 C 1.53040 * 109.49581 * 60.00061 * 21 19 18 24 24 C 1.53043 * 109.53872 * 181.31824 * 23 21 19 25 25 C 1.53192 * 109.31153 * 298.63555 * 24 23 21 26 26 N 1.46931 * 108.77423 * 54.63347 * 25 24 23 27 27 C 1.34776 * 120.62512 * 126.41443 * 26 25 24 28 28 O 1.21277 * 119.99709 * 180.02562 * 27 26 25 29 29 C 1.50697 * 120.00513 * 359.97438 * 27 26 25 30 30 C 1.53006 * 117.49957 * 248.75044 * 29 27 26 31 31 C 1.52999 * 117.50241 * 180.09030 * 29 27 26 32 32 C 1.46920 * 118.73863 * 306.39042 * 26 25 24 33 33 H 0.96991 * 120.00119 * 174.37974 * 1 2 3 34 34 H 1.08996 * 110.41323 * 259.20313 * 10 9 7 35 35 H 1.09007 * 110.40590 * 21.63556 * 10 9 7 36 36 H 1.08999 * 110.40501 * 338.36317 * 15 9 7 37 37 H 1.09000 * 110.40823 * 100.68521 * 15 9 7 38 38 H 0.96988 * 120.00100 * 335.00221 * 18 16 13 39 39 H 1.09004 * 109.46225 * 301.34280 * 23 21 19 40 40 H 1.09007 * 109.45990 * 61.29731 * 23 21 19 41 41 H 1.08994 * 109.49795 * 58.58815 * 24 23 21 42 42 H 1.08997 * 109.49482 * 178.65497 * 24 23 21 43 43 H 1.08995 * 109.58553 * 174.42440 * 25 24 23 44 44 H 1.08995 * 109.58623 * 294.84735 * 25 24 23 45 45 H 1.09003 * 115.55023 * 34.41860 * 29 27 26 46 46 H 1.08993 * 117.49742 * 359.97438 * 30 29 27 47 47 H 1.08996 * 117.49505 * 145.01749 * 30 29 27 48 48 H 1.09000 * 117.49880 * 214.98448 * 31 29 27 49 49 H 1.09004 * 117.49498 * 359.97438 * 31 29 27 50 50 H 1.08998 * 109.58792 * 293.81705 * 32 26 25 51 51 H 1.09005 * 109.58137 * 173.39738 * 32 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4178 -2.3350 0.4899 10 6 1.7695 -3.7441 0.1974 11 6 1.6258 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0129 13 6 0.6377 -3.6010 2.3665 14 1 0.8021 -3.3727 3.4195 15 6 0.2753 -2.4297 1.4283 16 6 0.2071 -5.0114 1.9588 17 1 -0.5529 -5.0999 1.1824 18 7 0.1593 -6.0326 3.0081 19 6 -0.6505 -7.1013 2.8720 20 8 -1.3393 -7.2178 1.8805 21 6 -0.7003 -8.1515 3.9517 22 1 0.2902 -8.5879 4.0806 23 6 -1.1515 -7.5113 5.2665 24 6 -1.1708 -8.5703 6.3712 25 6 -2.1704 -9.6705 6.0010 26 7 -1.8281 -10.1923 4.6708 27 6 -1.6408 -11.5131 4.4787 28 8 -1.3582 -11.9313 3.3759 29 6 -1.7814 -12.4701 5.6342 30 6 -0.5120 -13.1588 6.1397 31 6 -1.5544 -13.9566 5.3522 32 6 -1.6945 -9.2469 3.5541 33 1 -0.4850 -0.8359 -0.0823 34 1 1.0793 -4.1643 -0.5340 35 1 2.7957 -3.8125 -0.1639 36 1 0.1726 -1.5053 1.9966 37 1 -0.6452 -2.6458 0.8858 38 1 0.7103 -5.9396 3.8009 39 1 -0.4592 -6.7147 5.5390 40 1 -2.1520 -7.0963 5.1437 41 1 -0.1761 -9.0032 6.4776 42 1 -1.4692 -8.1087 7.3124 43 1 -2.1162 -10.4752 6.7342 44 1 -3.1787 -9.2571 5.9830 45 1 -2.5396 -12.2079 6.3722 46 1 0.4246 -12.9199 5.6361 47 1 -0.4354 -13.3500 7.2100 48 1 -2.1630 -14.6724 5.9047 49 1 -1.3037 -14.2424 4.3306 50 1 -2.6641 -8.7990 3.3365 51 1 -1.3264 -9.7723 2.6728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960060008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:41 Heat of formation + Delta-G solvation = 12.217289 kcal Electronic energy + Delta-G solvation = -30281.396994 eV Core-core repulsion = 26183.079995 eV Total energy + Delta-G solvation = -4098.316999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.97904 -39.93442 -38.62941 -37.60904 -36.40929 -34.71354 -33.59120 -32.60591 -31.70672 -30.07758 -27.37400 -26.66451 -25.67985 -24.92067 -23.46658 -22.90056 -22.22775 -21.38046 -20.55590 -19.95308 -19.41077 -19.16288 -18.14371 -17.47274 -17.07978 -16.57635 -16.16728 -15.68871 -15.55373 -15.06003 -14.84309 -14.47411 -14.37472 -13.98332 -13.79803 -13.70963 -13.58955 -13.29200 -13.16194 -13.11860 -12.87952 -12.41438 -12.05468 -11.93445 -11.87010 -11.62976 -11.55438 -11.47049 -11.10012 -11.06730 -10.92913 -10.81556 -10.69618 -10.58090 -10.28720 -10.16716 -10.09490 -9.87551 -9.68856 -9.30144 -9.05397 -8.59895 -8.38982 -7.02237 -6.15860 -3.22207 2.09976 2.42456 2.47088 3.05346 3.38547 3.48738 3.52323 3.65322 3.95721 4.07550 4.14023 4.27507 4.34747 4.37963 4.41524 4.50337 4.53481 4.56451 4.69746 4.89898 4.92636 4.94626 5.08145 5.11330 5.21087 5.23016 5.28121 5.28423 5.34625 5.39532 5.42878 5.48283 5.50859 5.66862 5.68262 5.70564 5.77156 5.79502 5.88533 6.04723 6.09583 6.35272 6.58936 6.63027 6.73507 6.92765 6.95364 6.98058 7.43093 7.72248 7.80660 8.13752 8.42105 8.94378 9.75133 10.37936 11.19926 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.001750 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.152727 B =15997.223919 C =16259.368510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.075 2.925 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.180 4.180 12 H 0.106 0.894 13 C -0.172 4.172 14 H 0.103 0.897 15 C 0.165 3.835 16 C 0.095 3.905 17 H 0.135 0.865 18 N -0.695 5.695 19 C 0.523 3.477 20 O -0.534 6.534 21 C -0.120 4.120 22 H 0.101 0.899 23 C -0.114 4.114 24 C -0.133 4.133 25 C 0.104 3.896 26 N -0.609 5.609 27 C 0.544 3.456 28 O -0.537 6.537 29 C -0.196 4.196 30 C -0.152 4.152 31 C -0.148 4.148 32 C 0.132 3.868 33 H 0.269 0.731 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.399 0.601 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.125 0.875 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.080 0.920 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -24.291 20.059 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.228 4.228 3 Si 0.905 3.095 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.459 4.459 8 H 0.084 0.916 9 N -0.321 5.321 10 C 0.028 3.972 11 C -0.201 4.201 12 H 0.124 0.876 13 C -0.193 4.193 14 H 0.121 0.879 15 C 0.039 3.961 16 C -0.011 4.011 17 H 0.152 0.848 18 N -0.343 5.343 19 C 0.309 3.691 20 O -0.410 6.410 21 C -0.142 4.142 22 H 0.119 0.881 23 C -0.151 4.151 24 C -0.171 4.171 25 C -0.019 4.019 26 N -0.342 5.342 27 C 0.333 3.667 28 O -0.413 6.413 29 C -0.217 4.217 30 C -0.189 4.189 31 C -0.185 4.185 32 C 0.009 3.991 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.143 0.857 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.127 0.873 50 H 0.098 0.902 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.662 -22.804 18.732 29.737 hybrid contribution 0.533 -1.430 0.566 1.628 sum -3.129 -24.234 19.298 31.137 Atomic orbital electron populations 1.70704 1.06554 1.30392 1.48202 1.25897 0.96607 1.01295 0.98981 0.83387 0.74196 0.75223 0.76735 1.21793 1.21626 1.21997 1.19793 0.97253 0.86737 1.42071 0.91644 1.45287 1.37462 1.00245 1.49107 1.21198 0.98701 0.85913 0.91401 1.25123 0.92171 1.02859 0.99985 0.87577 1.24400 1.03784 0.91467 0.99660 0.87869 1.21123 0.90773 0.94271 0.89934 1.22530 0.98357 0.87235 0.92995 0.84783 1.45342 1.44114 1.22395 1.22442 1.20317 0.79391 0.81983 0.87451 1.90740 1.42391 1.76727 1.31108 1.21662 1.02230 0.95463 0.94862 0.88094 1.21556 1.02956 0.97977 0.92657 1.21916 1.00302 0.96146 0.98722 1.21842 0.98752 0.97529 0.83798 1.48016 1.69868 1.06082 1.10282 1.19696 0.76030 0.82007 0.89004 1.90718 1.47797 1.77102 1.25707 1.22219 1.03699 0.95221 1.00603 1.22954 0.92849 1.02255 1.00845 1.22986 1.01687 0.91159 1.02706 1.21350 0.99332 0.88921 0.89457 0.91955 0.95521 0.92758 0.91350 0.95385 0.76724 0.90727 0.90677 0.91041 0.89885 0.89219 0.90941 0.85721 0.88223 0.87695 0.87837 0.87344 0.90175 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.86 12.82 55.49 0.71 -27.15 16 2 C -0.03 -0.75 5.12 -17.43 -0.09 -0.83 16 3 Si 1.08 25.38 29.98 -169.99 -5.10 20.28 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.33 -9.39 10.19 -15.06 -0.15 -9.55 16 8 H 0.07 1.85 7.94 -52.49 -0.42 1.43 16 9 N -0.60 -15.30 3.22 -168.61 -0.54 -15.84 16 10 C 0.15 3.31 7.08 -2.19 -0.02 3.29 16 11 C -0.18 -3.15 7.25 -86.76 -0.63 -3.78 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 13 C -0.17 -3.08 6.91 -89.22 -0.62 -3.70 16 14 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 15 C 0.17 3.83 4.99 -2.41 -0.01 3.82 16 16 C 0.09 1.54 6.19 -65.69 -0.41 1.13 16 17 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 18 N -0.69 -8.61 5.46 -51.64 -0.28 -8.90 16 19 C 0.52 6.81 7.16 -10.99 -0.08 6.73 16 20 O -0.53 -9.27 15.49 5.55 0.09 -9.19 16 21 C -0.12 -1.10 2.68 -91.65 -0.25 -1.34 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.11 -0.73 5.07 -26.69 -0.14 -0.87 16 24 C -0.13 -0.59 6.08 -26.61 -0.16 -0.75 16 25 C 0.10 0.52 6.30 -3.71 -0.02 0.50 16 26 N -0.61 -5.23 2.97 -172.78 -0.51 -5.74 16 27 C 0.54 5.54 7.48 -10.99 -0.08 5.46 16 28 O -0.54 -7.75 15.67 5.56 0.09 -7.67 16 29 C -0.20 -1.27 4.96 -91.77 -0.45 -1.73 16 30 C -0.15 -0.80 10.24 -26.69 -0.27 -1.07 16 31 C -0.15 -0.92 10.05 -26.69 -0.27 -1.18 16 32 C 0.13 1.41 5.06 -3.72 -0.02 1.39 16 33 H 0.27 8.23 6.41 -40.82 -0.26 7.97 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.73 7.47 -51.93 -0.39 1.35 16 37 H 0.03 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.40 3.76 8.23 -40.82 -0.34 3.42 16 39 H 0.07 0.42 7.53 -51.93 -0.39 0.03 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.28 5.68 -51.93 -0.29 -0.01 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.12 0.51 6.82 -51.93 -0.35 0.16 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 50 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 51 H 0.10 1.35 7.01 -51.93 -0.36 0.99 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -35.80 405.21 -11.38 -47.18 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.27 Total: 3.39 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.66 Total: -2.48 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.63 Total: -57.62 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.17 Total: -16.85 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.10 Total: 20.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.80 -11.38 -47.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960060008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds