Wall clock time and date at job start Wed Apr 1 2020 04:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86787 * 120.00284 * 2 1 4 4 H 1.48508 * 109.47225 * 274.98608 * 3 2 1 5 5 H 1.48503 * 109.47485 * 34.98300 * 3 2 1 6 6 H 1.48503 * 109.47359 * 154.98661 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99937 * 187.06546 * 7 2 1 9 9 N 1.36936 * 120.00500 * 7.06097 * 7 2 1 10 10 C 1.47018 * 125.64821 * 354.88350 * 9 7 2 11 11 C 1.54322 * 107.27607 * 178.90463 * 10 9 7 12 12 C 1.55165 * 103.09783 * 337.71198 * 11 10 9 13 13 H 1.08994 * 111.00482 * 277.51595 * 12 11 10 14 14 C 1.52997 * 111.00061 * 153.66604 * 12 11 10 15 15 H 1.09004 * 109.50007 * 299.93340 * 14 12 11 16 16 C 1.53043 * 109.49569 * 179.84058 * 14 12 11 17 17 C 1.53039 * 109.53822 * 178.68599 * 16 14 12 18 18 C 1.53186 * 109.31799 * 61.36386 * 17 16 14 19 19 N 1.46932 * 108.77542 * 305.36919 * 18 17 16 20 20 C 1.34777 * 120.62917 * 233.62896 * 19 18 17 21 21 O 1.21277 * 119.99907 * 179.97438 * 20 19 18 22 22 C 1.50703 * 120.00071 * 359.97353 * 20 19 18 23 23 C 1.52995 * 109.47080 * 179.97438 * 22 20 19 24 24 C 1.50698 * 109.46860 * 179.97438 * 23 22 20 25 25 C 1.41379 * 126.79815 * 124.71496 * 24 23 22 26 26 C 1.35450 * 103.98649 * 179.88829 * 25 24 23 27 27 O 1.34047 * 106.44430 * 0.36492 * 26 25 24 28 28 N 1.20923 * 111.56578 * 359.75183 * 27 26 25 29 29 C 1.46930 * 118.73913 * 53.60249 * 19 18 17 30 30 C 1.47431 * 125.64950 * 174.83517 * 9 7 2 31 31 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88619 * 59.47785 * 10 9 7 33 33 H 1.09005 * 110.00982 * 298.38983 * 10 9 7 34 34 H 1.08995 * 110.72183 * 96.16316 * 11 10 9 35 35 H 1.09000 * 110.72086 * 219.26615 * 11 10 9 36 36 H 1.08999 * 109.46060 * 298.70557 * 16 14 12 37 37 H 1.08996 * 109.46079 * 58.66144 * 16 14 12 38 38 H 1.09006 * 109.49743 * 301.40954 * 17 16 14 39 39 H 1.09005 * 109.49453 * 181.31848 * 17 16 14 40 40 H 1.08997 * 109.59327 * 185.57909 * 18 17 16 41 41 H 1.09000 * 109.58601 * 65.14884 * 18 17 16 42 42 H 1.09000 * 109.46809 * 300.00156 * 22 20 19 43 43 H 1.09003 * 109.46938 * 59.99671 * 22 20 19 44 44 H 1.08994 * 109.47308 * 300.00192 * 23 22 20 45 45 H 1.09008 * 109.46866 * 60.00161 * 23 22 20 46 46 H 1.08001 * 128.01243 * 0.02562 * 25 24 23 47 47 H 1.08006 * 126.77990 * 180.09853 * 26 25 24 48 48 H 1.08996 * 109.58261 * 186.60627 * 29 19 18 49 49 H 1.08995 * 109.58216 * 66.18058 * 29 19 18 50 50 H 1.09000 * 110.36261 * 323.00345 * 30 9 7 51 51 H 1.08994 * 110.36746 * 85.22125 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1156 9 7 1.3332 -2.3836 -0.1447 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4288 -4.0331 -0.3997 12 6 0.8893 -4.5787 -1.0101 13 1 0.9242 -4.4027 -2.0851 14 6 1.0658 -6.0652 -0.6939 15 1 1.0977 -6.2061 0.3865 16 6 2.3716 -6.5678 -1.3140 17 6 2.5654 -8.0465 -0.9707 18 6 1.4072 -8.8591 -1.5580 19 7 0.1398 -8.2897 -1.0800 20 6 -0.7763 -9.0682 -0.4709 21 8 -1.8184 -8.5861 -0.0804 22 6 -0.5058 -10.5378 -0.2750 23 6 -1.6957 -11.1850 0.4363 24 6 -1.4254 -12.6546 0.6316 25 6 -1.4528 -13.3657 1.8532 26 6 -1.1482 -14.6371 1.4988 27 8 -0.9573 -14.6258 0.1721 28 7 -1.1151 -13.5197 -0.2903 29 6 -0.1095 -6.8553 -1.2781 30 6 1.9493 -3.7172 -0.2693 31 1 -0.4850 0.8400 0.0004 32 1 -0.5256 -1.9615 -1.0427 33 1 -0.5762 -2.1832 0.7272 34 1 -0.6387 -4.5127 0.5562 35 1 -1.2604 -4.1727 -1.0905 36 1 2.3288 -6.4489 -2.3966 37 1 3.2072 -5.9905 -0.9183 38 1 2.5836 -8.1692 0.1123 39 1 3.5070 -8.3976 -1.3929 40 1 1.4871 -9.8965 -1.2334 41 1 1.4419 -8.8108 -2.6463 42 1 -0.3598 -11.0127 -1.2452 43 1 0.3918 -10.6645 0.3303 44 1 -1.8413 -10.7099 1.4064 45 1 -2.5935 -11.0582 -0.1688 46 1 -1.6689 -12.9842 2.8402 47 1 -1.0699 -15.4905 2.1561 48 1 -1.0302 -6.5708 -0.7689 49 1 -0.1983 -6.6437 -2.3436 50 1 2.8664 -3.6581 -0.8555 51 1 2.1563 -4.1331 0.7167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961202875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:26 Heat of formation + Delta-G solvation = 37.929949 kcal Electronic energy + Delta-G solvation = -30439.018404 eV Core-core repulsion = 26341.816390 eV Total energy + Delta-G solvation = -4097.202014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.30980 -40.44316 -38.39033 -36.72382 -35.65357 -33.70306 -32.54721 -32.31639 -31.62689 -30.95556 -28.90458 -27.49346 -26.19301 -25.07960 -24.06370 -23.52440 -22.83268 -21.40357 -20.69086 -19.84540 -19.47820 -18.94611 -18.27482 -17.88710 -17.19803 -16.73932 -16.08933 -15.95869 -15.23102 -15.10911 -14.57783 -14.47950 -14.17560 -14.06251 -13.84749 -13.67502 -13.55864 -13.15114 -13.01272 -12.74610 -12.58230 -12.28689 -12.12905 -12.00829 -11.92886 -11.74273 -11.34832 -11.23087 -11.02375 -10.99583 -10.82403 -10.75913 -10.57655 -10.42979 -10.07020 -10.05836 -9.98950 -9.84785 -9.74981 -9.64663 -9.54897 -8.68817 -8.52698 -6.76577 -5.67508 -2.99499 1.11117 1.82946 2.49255 2.82726 2.90006 3.42308 3.47200 3.49531 3.76288 4.07463 4.37125 4.52373 4.55600 4.68792 4.72350 4.76811 4.80497 4.83667 4.97480 5.03511 5.09346 5.16098 5.21153 5.30790 5.45162 5.50871 5.52983 5.57465 5.59684 5.60694 5.68012 5.75363 5.76910 5.82822 5.94448 5.99799 6.04025 6.10189 6.29299 6.31820 6.45665 6.49561 6.63528 6.65824 6.81110 7.03685 7.27624 7.62070 7.71703 7.88255 7.88919 8.04156 8.31854 9.27108 9.88130 10.55630 11.44534 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.001805 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.660544 B =15506.279007 C =15980.773597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.086 4.086 15 H 0.073 0.927 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.105 3.895 19 N -0.610 5.610 20 C 0.515 3.485 21 O -0.540 6.540 22 C -0.134 4.134 23 C -0.027 4.027 24 C 0.019 3.981 25 C -0.231 4.231 26 C -0.060 4.060 27 O 0.097 5.903 28 N -0.364 5.364 29 C 0.116 3.884 30 C 0.145 3.855 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.173 0.827 47 H 0.216 0.784 48 H 0.096 0.904 49 H 0.066 0.934 50 H 0.036 0.964 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -30.460 0.224 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.178 4.178 12 C -0.115 4.115 13 H 0.092 0.908 14 C -0.105 4.105 15 H 0.091 0.909 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.018 4.018 19 N -0.343 5.343 20 C 0.303 3.697 21 O -0.417 6.417 22 C -0.174 4.174 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.252 4.252 26 C -0.142 4.142 27 O 0.031 5.969 28 N -0.068 5.068 29 C -0.006 4.006 30 C 0.019 3.981 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.190 0.810 47 H 0.233 0.767 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.054 0.946 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.255 -29.886 -0.879 29.900 hybrid contribution 0.407 1.018 0.975 1.467 sum 0.662 -28.868 0.096 28.876 Atomic orbital electron populations 1.69994 1.04893 1.24931 1.56872 1.24824 0.95695 0.97638 1.02357 0.86134 0.78659 0.83745 0.77459 1.21672 1.21810 1.20687 1.19057 0.91076 0.82670 1.42837 0.90534 1.44486 1.01809 1.00981 1.86019 1.21130 0.84364 0.88708 1.00607 1.22919 0.95975 0.99554 0.99386 1.22389 0.97566 0.91544 1.00001 0.90774 1.21452 0.93892 0.94722 1.00474 0.90882 1.21597 0.98153 0.94640 1.00959 1.21932 0.97556 0.96305 1.01513 1.21790 0.83215 0.97498 0.99248 1.48165 1.17925 1.09719 1.58534 1.20519 0.83488 0.88500 0.77230 1.90718 1.25671 1.75367 1.49961 1.21631 1.00056 0.92607 1.03150 1.19750 0.98485 0.85028 1.03248 1.23713 1.02150 0.98527 0.89587 1.22823 1.08520 0.93322 1.00567 1.26051 1.02406 1.00499 0.85212 1.84850 1.65119 1.25829 1.21099 1.73844 1.18567 0.91124 1.23287 1.21750 0.99902 0.77996 1.00912 1.21597 0.94195 0.86445 0.95851 0.93817 0.93626 0.94357 0.92599 0.92398 0.91764 0.91004 0.91512 0.90742 0.90024 0.91151 0.88446 0.88771 0.88600 0.88940 0.80999 0.76706 0.88580 0.91548 0.94622 0.96720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.67 10.36 55.49 0.57 -27.09 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.46 29.56 -169.99 -5.02 17.43 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.61 -15.86 3.40 -169.76 -0.58 -16.43 16 10 C 0.18 4.43 5.38 -3.07 -0.02 4.41 16 11 C -0.14 -2.69 5.38 -24.89 -0.13 -2.83 16 12 C -0.09 -1.62 2.58 -88.21 -0.23 -1.85 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.09 -1.16 1.87 -90.50 -0.17 -1.32 16 15 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 16 C -0.12 -1.28 5.05 -26.69 -0.13 -1.42 16 17 C -0.13 -1.15 6.08 -26.62 -0.16 -1.32 16 18 C 0.11 0.86 6.34 -3.71 -0.02 0.84 16 19 N -0.61 -6.85 2.97 -172.77 -0.51 -7.36 16 20 C 0.51 6.20 7.70 -10.98 -0.08 6.11 16 21 O -0.54 -8.53 15.39 5.56 0.09 -8.44 16 22 C -0.13 -1.16 4.02 -27.88 -0.11 -1.27 16 23 C -0.03 -0.24 5.10 -27.89 -0.14 -0.38 16 24 C 0.02 0.16 6.59 -82.10 -0.54 -0.38 16 25 C -0.23 -1.43 11.12 -39.38 -0.44 -1.86 16 26 C -0.06 -0.29 12.30 29.74 0.37 0.07 16 27 O 0.10 0.77 11.20 17.16 0.19 0.96 16 28 N -0.36 -3.54 12.06 33.42 0.40 -3.14 16 29 C 0.12 1.51 5.38 -3.71 -0.02 1.49 16 30 C 0.15 3.01 5.99 -2.26 -0.01 2.99 16 31 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 33 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 34 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.51 5.93 -51.93 -0.31 0.21 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 43 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 44 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 45 H 0.09 0.91 8.10 -51.92 -0.42 0.49 16 46 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.22 0.08 8.06 -52.48 -0.42 -0.34 16 48 H 0.10 1.46 6.38 -51.93 -0.33 1.13 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 51 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -34.76 400.88 -9.40 -44.16 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.48 Total: -2.42 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.10 Total: -3.70 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.11 Total: -54.03 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.48 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.76 -9.40 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961202875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.086 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds