Wall clock time and date at job start Wed Apr 1 2020 04:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86787 * 120.00284 * 2 1 4 4 H 1.48508 * 109.47225 * 274.98608 * 3 2 1 5 5 H 1.48503 * 109.47485 * 34.98300 * 3 2 1 6 6 H 1.48503 * 109.47359 * 154.98661 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99937 * 187.06546 * 7 2 1 9 9 N 1.36936 * 120.00500 * 7.06097 * 7 2 1 10 10 C 1.47018 * 125.64821 * 354.88350 * 9 7 2 11 11 C 1.54322 * 107.27607 * 178.90463 * 10 9 7 12 12 C 1.55165 * 103.09783 * 337.71198 * 11 10 9 13 13 H 1.08994 * 111.00482 * 277.51595 * 12 11 10 14 14 C 1.52997 * 111.00061 * 153.66604 * 12 11 10 15 15 H 1.09004 * 109.50007 * 299.93340 * 14 12 11 16 16 C 1.53043 * 109.49569 * 179.84058 * 14 12 11 17 17 C 1.53039 * 109.53822 * 178.68599 * 16 14 12 18 18 C 1.53186 * 109.31799 * 61.36386 * 17 16 14 19 19 N 1.46932 * 108.77542 * 305.36919 * 18 17 16 20 20 C 1.34777 * 120.62917 * 233.62896 * 19 18 17 21 21 O 1.21277 * 119.99907 * 179.97438 * 20 19 18 22 22 C 1.50703 * 120.00071 * 359.97353 * 20 19 18 23 23 C 1.52995 * 109.47080 * 179.97438 * 22 20 19 24 24 C 1.50698 * 109.46860 * 179.97438 * 23 22 20 25 25 C 1.41379 * 126.79815 * 124.71496 * 24 23 22 26 26 C 1.35450 * 103.98649 * 179.88829 * 25 24 23 27 27 O 1.34047 * 106.44430 * 0.36492 * 26 25 24 28 28 N 1.20923 * 111.56578 * 359.75183 * 27 26 25 29 29 C 1.46930 * 118.73913 * 53.60249 * 19 18 17 30 30 C 1.47431 * 125.64950 * 174.83517 * 9 7 2 31 31 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88619 * 59.47785 * 10 9 7 33 33 H 1.09005 * 110.00982 * 298.38983 * 10 9 7 34 34 H 1.08995 * 110.72183 * 96.16316 * 11 10 9 35 35 H 1.09000 * 110.72086 * 219.26615 * 11 10 9 36 36 H 1.08999 * 109.46060 * 298.70557 * 16 14 12 37 37 H 1.08996 * 109.46079 * 58.66144 * 16 14 12 38 38 H 1.09006 * 109.49743 * 301.40954 * 17 16 14 39 39 H 1.09005 * 109.49453 * 181.31848 * 17 16 14 40 40 H 1.08997 * 109.59327 * 185.57909 * 18 17 16 41 41 H 1.09000 * 109.58601 * 65.14884 * 18 17 16 42 42 H 1.09000 * 109.46809 * 300.00156 * 22 20 19 43 43 H 1.09003 * 109.46938 * 59.99671 * 22 20 19 44 44 H 1.08994 * 109.47308 * 300.00192 * 23 22 20 45 45 H 1.09008 * 109.46866 * 60.00161 * 23 22 20 46 46 H 1.08001 * 128.01243 * 0.02562 * 25 24 23 47 47 H 1.08006 * 126.77990 * 180.09853 * 26 25 24 48 48 H 1.08996 * 109.58261 * 186.60627 * 29 19 18 49 49 H 1.08995 * 109.58216 * 66.18058 * 29 19 18 50 50 H 1.09000 * 110.36261 * 323.00345 * 30 9 7 51 51 H 1.08994 * 110.36746 * 85.22125 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1156 9 7 1.3332 -2.3836 -0.1447 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4288 -4.0331 -0.3997 12 6 0.8893 -4.5787 -1.0101 13 1 0.9242 -4.4027 -2.0851 14 6 1.0658 -6.0652 -0.6939 15 1 1.0977 -6.2061 0.3865 16 6 2.3716 -6.5678 -1.3140 17 6 2.5654 -8.0465 -0.9707 18 6 1.4072 -8.8591 -1.5580 19 7 0.1398 -8.2897 -1.0800 20 6 -0.7763 -9.0682 -0.4709 21 8 -1.8184 -8.5861 -0.0804 22 6 -0.5058 -10.5378 -0.2750 23 6 -1.6957 -11.1850 0.4363 24 6 -1.4254 -12.6546 0.6316 25 6 -1.4528 -13.3657 1.8532 26 6 -1.1482 -14.6371 1.4988 27 8 -0.9573 -14.6258 0.1721 28 7 -1.1151 -13.5197 -0.2903 29 6 -0.1095 -6.8553 -1.2781 30 6 1.9493 -3.7172 -0.2693 31 1 -0.4850 0.8400 0.0004 32 1 -0.5256 -1.9615 -1.0427 33 1 -0.5762 -2.1832 0.7272 34 1 -0.6387 -4.5127 0.5562 35 1 -1.2604 -4.1727 -1.0905 36 1 2.3288 -6.4489 -2.3966 37 1 3.2072 -5.9905 -0.9183 38 1 2.5836 -8.1692 0.1123 39 1 3.5070 -8.3976 -1.3929 40 1 1.4871 -9.8965 -1.2334 41 1 1.4419 -8.8108 -2.6463 42 1 -0.3598 -11.0127 -1.2452 43 1 0.3918 -10.6645 0.3303 44 1 -1.8413 -10.7099 1.4064 45 1 -2.5935 -11.0582 -0.1688 46 1 -1.6689 -12.9842 2.8402 47 1 -1.0699 -15.4905 2.1561 48 1 -1.0302 -6.5708 -0.7689 49 1 -0.1983 -6.6437 -2.3436 50 1 2.8664 -3.6581 -0.8555 51 1 2.1563 -4.1331 0.7167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961202875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:25 Heat of formation + Delta-G solvation = 17.186006 kcal Electronic energy + Delta-G solvation = -30439.917929 eV Core-core repulsion = 26341.816390 eV Total energy + Delta-G solvation = -4098.101539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.84811 -41.39706 -39.72433 -38.06018 -36.29811 -35.20622 -33.71485 -33.07240 -32.54985 -32.04178 -30.66213 -28.98055 -27.13417 -26.59704 -25.32270 -24.03164 -23.89089 -22.34761 -21.68373 -21.47682 -20.83403 -19.82586 -18.89799 -18.78119 -18.45433 -17.98125 -17.02825 -16.87226 -16.74253 -16.27953 -15.76795 -15.67275 -15.46173 -15.08868 -14.91730 -14.57311 -14.28531 -14.12470 -13.97840 -13.88432 -13.85305 -13.58290 -13.44526 -13.29137 -13.17340 -12.82333 -12.77605 -12.63241 -12.29829 -12.10214 -12.08317 -11.97467 -11.95074 -11.75704 -11.71718 -11.41732 -11.36513 -11.07336 -10.97099 -10.75760 -10.70201 -10.50268 -9.62435 -8.90294 -7.86831 -5.21665 0.66711 1.30773 1.43985 1.46581 1.55521 1.58126 1.98329 2.48837 2.52280 3.18014 3.30883 3.47573 3.59160 3.66427 3.74951 3.82830 3.91402 4.03010 4.09304 4.14808 4.17844 4.25338 4.32254 4.38365 4.42222 4.47624 4.55603 4.61649 4.64854 4.70345 4.73444 4.79693 4.86512 4.90415 4.91327 4.93257 4.97145 5.05302 5.06000 5.15497 5.18137 5.21213 5.35188 5.41082 5.45161 5.55017 5.55779 5.65080 5.75828 6.18915 6.40761 7.08706 7.13308 7.38913 7.77303 8.43340 9.24431 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.001805 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.660544 B =15506.279007 C =15980.773597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.630 5.630 10 C 0.184 3.816 11 C -0.126 4.126 12 C -0.076 4.076 13 H 0.078 0.922 14 C -0.072 4.072 15 H 0.060 0.940 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.101 3.899 19 N -0.609 5.609 20 C 0.509 3.491 21 O -0.586 6.586 22 C -0.121 4.121 23 C -0.024 4.024 24 C 0.005 3.995 25 C -0.245 4.245 26 C -0.041 4.041 27 O 0.087 5.913 28 N -0.394 5.394 29 C 0.120 3.880 30 C 0.142 3.858 31 H 0.246 0.754 32 H 0.011 0.989 33 H -0.003 1.003 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.191 0.809 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.046 0.954 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -33.367 -0.017 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.059 3.941 11 C -0.164 4.164 12 C -0.096 4.096 13 H 0.097 0.903 14 C -0.092 4.092 15 H 0.078 0.922 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.020 4.020 19 N -0.341 5.341 20 C 0.299 3.701 21 O -0.466 6.466 22 C -0.161 4.161 23 C -0.062 4.062 24 C -0.153 4.153 25 C -0.267 4.267 26 C -0.122 4.122 27 O 0.022 5.978 28 N -0.100 5.100 29 C -0.003 4.003 30 C 0.017 3.983 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.208 0.792 47 H 0.277 0.723 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.537 -32.843 -1.133 32.960 hybrid contribution -0.286 1.872 1.105 2.192 sum 2.251 -30.971 -0.028 31.053 Atomic orbital electron populations 1.70230 1.06494 1.25252 1.58170 1.25737 0.96618 1.01275 1.02666 0.85031 0.77840 0.78974 0.77333 1.21268 1.22268 1.18992 1.19497 0.91691 0.83912 1.42113 0.89797 1.44834 1.02419 1.02447 1.85893 1.20880 0.84091 0.92006 0.97102 1.22752 0.97969 0.95412 1.00301 1.22267 0.94383 0.93466 0.99487 0.90318 1.21281 0.95901 0.92059 0.99979 0.92155 1.21589 0.95940 0.96458 1.01230 1.21902 0.98918 0.94278 1.01503 1.22071 0.81265 0.98531 1.00151 1.48257 1.19000 1.08798 1.58061 1.21125 0.82838 0.89775 0.76351 1.90699 1.27638 1.76395 1.51912 1.21576 1.00651 0.89861 1.04000 1.19642 0.97982 0.85749 1.02838 1.23791 1.02634 0.98214 0.90685 1.23137 1.09142 0.93728 1.00658 1.26866 0.99768 1.01404 0.84155 1.84802 1.65168 1.25192 1.22670 1.73839 1.20054 0.91810 1.24310 1.21536 0.98369 0.79437 1.00965 1.21778 0.95378 0.84599 0.96516 0.94467 0.97058 0.98456 0.92310 0.90800 0.90823 0.91606 0.91941 0.88037 0.87584 0.89671 0.87429 0.86748 0.88799 0.90683 0.79201 0.72341 0.91200 0.90624 0.93577 0.96498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 10.36 21.65 0.22 -59.49 16 2 C -0.07 -4.14 5.48 84.86 0.46 -3.67 16 3 Si 0.98 46.92 29.56 68.60 2.03 48.95 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -14.08 10.26 84.03 0.86 -13.22 16 8 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 9 N -0.63 -33.72 3.40 -691.01 -2.35 -36.06 16 10 C 0.18 9.71 5.38 86.73 0.47 10.17 16 11 C -0.13 -4.96 5.38 31.79 0.17 -4.79 16 12 C -0.08 -2.56 2.58 -9.23 -0.02 -2.58 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.07 -1.86 1.87 -10.72 -0.02 -1.88 16 15 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 16 C -0.11 -2.22 5.05 30.62 0.15 -2.06 16 17 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 18 C 0.10 1.29 6.34 86.36 0.55 1.84 16 19 N -0.61 -12.57 2.97 -818.91 -2.43 -15.01 16 20 C 0.51 11.85 7.70 87.66 0.67 12.52 16 21 O -0.59 -18.88 15.39 -3.02 -0.05 -18.92 16 22 C -0.12 -1.90 4.02 29.85 0.12 -1.78 16 23 C -0.02 -0.41 5.10 29.85 0.15 -0.26 16 24 C 0.00 0.08 6.59 43.58 0.29 0.37 16 25 C -0.25 -2.52 11.12 22.40 0.25 -2.27 16 26 C -0.04 -0.28 12.30 67.18 0.83 0.55 16 27 O 0.09 1.22 11.20 71.57 0.80 2.02 16 28 N -0.39 -7.21 12.06 -49.56 -0.60 -7.81 16 29 C 0.12 2.99 5.38 86.36 0.46 3.45 16 30 C 0.14 5.84 5.99 87.02 0.52 6.36 16 31 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.01 0.66 7.30 -2.38 -0.02 0.64 16 33 H 0.00 -0.17 7.61 -2.38 -0.02 -0.19 16 34 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.38 7.49 -2.39 -0.02 1.36 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 0.89 5.93 -2.39 -0.01 0.87 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 1.51 7.94 -2.39 -0.02 1.49 16 43 H 0.11 1.35 7.69 -2.39 -0.02 1.34 16 44 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 45 H 0.07 1.54 8.10 -2.38 -0.02 1.52 16 46 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 47 H 0.26 -0.94 8.06 -2.91 -0.02 -0.97 16 48 H 0.07 2.14 6.38 -2.39 -0.02 2.13 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 51 H 0.02 0.70 8.00 -2.39 -0.02 0.69 16 Total: -1.00 -80.18 400.88 4.64 -75.54 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.91 Total: 9.55 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.11 Total: 1.22 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -5.15 Total: -118.37 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.75 Total: -16.90 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -80.18 4.64 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961202875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.728 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds