Wall clock time and date at job start Wed Apr 1 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.65111 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27257 * 181.02583 * 10 9 7 12 12 C 1.55150 * 102.94509 * 22.18903 * 11 10 9 13 13 H 1.09006 * 111.00336 * 82.57404 * 12 11 10 14 14 C 1.52999 * 111.01025 * 206.38609 * 12 11 10 15 15 H 1.09004 * 109.49415 * 60.06104 * 14 12 11 16 16 C 1.53039 * 109.50186 * 180.16446 * 14 12 11 17 17 C 1.53039 * 109.53535 * 181.32042 * 16 14 12 18 18 C 1.53192 * 109.31351 * 298.63023 * 17 16 14 19 19 N 1.46919 * 108.77234 * 54.63627 * 18 17 16 20 20 C 1.34780 * 120.62926 * 126.41381 * 19 18 17 21 21 O 1.21283 * 120.00599 * 179.97438 * 20 19 18 22 22 C 1.50702 * 119.99845 * 359.97438 * 20 19 18 23 23 C 1.52995 * 109.47289 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.47289 * 179.97438 * 23 22 20 25 25 C 1.41383 * 126.80174 * 124.71290 * 24 23 22 26 26 C 1.35452 * 103.98083 * 179.88907 * 25 24 23 27 27 O 1.34038 * 106.44881 * 0.36643 * 26 25 24 28 28 N 1.20918 * 111.56494 * 359.75093 * 27 26 25 29 29 C 1.46923 * 118.74515 * 306.39538 * 19 18 17 30 30 C 1.47422 * 125.64544 * 179.71095 * 9 7 2 31 31 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88272 * 300.44289 * 10 9 7 33 33 H 1.08998 * 109.88129 * 61.44856 * 10 9 7 34 34 H 1.09003 * 110.72524 * 140.55669 * 11 10 9 35 35 H 1.09001 * 110.71935 * 263.65117 * 11 10 9 36 36 H 1.09002 * 109.45359 * 301.33657 * 16 14 12 37 37 H 1.08993 * 109.45818 * 61.29462 * 16 14 12 38 38 H 1.09005 * 109.49260 * 178.68536 * 17 16 14 39 39 H 1.08994 * 109.50440 * 58.58771 * 17 16 14 40 40 H 1.09004 * 109.58427 * 294.85744 * 18 17 16 41 41 H 1.08995 * 109.70400 * 174.50235 * 18 17 16 42 42 H 1.08999 * 109.47086 * 300.00125 * 22 20 19 43 43 H 1.09003 * 109.47098 * 60.00076 * 22 20 19 44 44 H 1.08999 * 109.47346 * 300.00196 * 23 22 20 45 45 H 1.08999 * 109.47265 * 60.00258 * 23 22 20 46 46 H 1.07993 * 128.00502 * 0.02562 * 25 24 23 47 47 H 1.08004 * 126.77350 * 180.09350 * 26 25 24 48 48 H 1.09001 * 109.58101 * 293.81895 * 29 19 18 49 49 H 1.08999 * 109.71045 * 173.46939 * 29 19 18 50 50 H 1.08996 * 110.37059 * 274.74940 * 30 9 7 51 51 H 1.09001 * 110.36609 * 37.07235 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 0.0263 12 6 0.8514 -4.6560 0.6119 13 1 0.8557 -4.5961 1.7003 14 6 1.0364 -6.1011 0.1446 15 1 1.0989 -6.1265 -0.9433 16 6 2.3238 -6.6712 0.7444 17 6 2.5267 -8.1057 0.2512 18 6 1.3519 -8.9721 0.7158 19 7 0.0990 -8.3508 0.2655 20 6 -0.8002 -9.0572 -0.4479 21 8 -1.8310 -8.5331 -0.8135 22 6 -0.5248 -10.4985 -0.7914 23 6 -1.6953 -11.0630 -1.5988 24 6 -1.4196 -12.5041 -1.9428 25 6 -2.2445 -13.6160 -1.6563 26 6 -1.5626 -14.6694 -2.1662 27 8 -0.4336 -14.1727 -2.6909 28 7 -0.3721 -12.9724 -2.5577 29 6 -0.1553 -6.9448 0.6079 30 6 1.9334 -3.7311 -0.0050 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5582 -2.0521 0.8826 33 1 -0.5539 -2.0822 -0.9014 34 1 -1.2990 -4.2515 0.6757 35 1 -0.6340 -4.4176 -0.9808 36 1 3.1706 -6.0580 0.4360 37 1 2.2502 -6.6680 1.8318 38 1 3.4557 -8.5030 0.6601 39 1 2.5756 -8.1127 -0.8376 40 1 1.3557 -9.0399 1.8037 41 1 1.4394 -9.9705 0.2872 42 1 0.3891 -10.5630 -1.3819 43 1 -0.4058 -11.0744 0.1264 44 1 -2.6090 -10.9985 -1.0080 45 1 -1.8147 -10.4873 -2.5166 46 1 -3.1985 -13.6234 -1.1503 47 1 -1.8663 -15.7058 -2.1491 48 1 -0.2745 -6.8474 1.6870 49 1 -1.0616 -6.6029 0.1080 50 1 2.1629 -4.0395 -1.0249 51 1 2.8351 -3.7419 0.6074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961202907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:36 Heat of formation + Delta-G solvation = 38.264120 kcal Electronic energy + Delta-G solvation = -30444.945303 eV Core-core repulsion = 26347.757780 eV Total energy + Delta-G solvation = -4097.187523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.31224 -40.44059 -38.39554 -36.72544 -35.65290 -33.69930 -32.54814 -32.30852 -31.62431 -30.94498 -28.89610 -27.49274 -26.18824 -25.07476 -24.05714 -23.52774 -22.82430 -21.39649 -20.69364 -19.83700 -19.47193 -18.93965 -18.27242 -17.89079 -17.20335 -16.73681 -16.06017 -15.94535 -15.41746 -14.93666 -14.54739 -14.47348 -14.24725 -14.00873 -13.82502 -13.70194 -13.58916 -13.11672 -12.97349 -12.77535 -12.57900 -12.28156 -12.11993 -11.99756 -11.91768 -11.73889 -11.36286 -11.21022 -11.00047 -10.98630 -10.81687 -10.75297 -10.56622 -10.43216 -10.07271 -10.06198 -9.98263 -9.85062 -9.73583 -9.63601 -9.52982 -8.68481 -8.54129 -6.75901 -5.65273 -2.98421 1.11235 1.82854 2.49144 2.82857 2.90232 3.43016 3.47561 3.49780 3.76386 4.07340 4.37270 4.52833 4.55831 4.69815 4.71672 4.76904 4.80821 4.84576 4.98413 5.02347 5.09897 5.16298 5.21210 5.31120 5.45253 5.52327 5.52806 5.57873 5.59250 5.62412 5.69116 5.76551 5.76912 5.82994 5.95853 6.00871 6.04908 6.10878 6.30185 6.32724 6.46466 6.50906 6.63980 6.66592 6.81974 7.04785 7.27807 7.62826 7.72474 7.88803 7.90069 8.04269 8.33053 9.28470 9.89235 10.56304 11.46360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.001809 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.706731 B =15471.752098 C =15935.709090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.094 4.094 13 H 0.074 0.926 14 C -0.087 4.087 15 H 0.073 0.927 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.106 3.894 19 N -0.610 5.610 20 C 0.514 3.486 21 O -0.540 6.540 22 C -0.134 4.134 23 C -0.027 4.027 24 C 0.019 3.981 25 C -0.231 4.231 26 C -0.060 4.060 27 O 0.098 5.902 28 N -0.363 5.363 29 C 0.116 3.884 30 C 0.145 3.855 31 H 0.251 0.749 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.172 0.828 47 H 0.216 0.784 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.016 0.984 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -31.657 0.898 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.106 4.106 15 H 0.091 0.909 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.343 5.343 20 C 0.303 3.697 21 O -0.417 6.417 22 C -0.174 4.174 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.253 4.253 26 C -0.142 4.142 27 O 0.032 5.968 28 N -0.067 5.067 29 C -0.005 4.005 30 C 0.019 3.981 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.190 0.810 47 H 0.233 0.767 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.033 0.967 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.017 -30.573 0.210 30.591 hybrid contribution -0.310 0.637 0.435 0.831 sum -1.328 -29.936 0.645 29.972 Atomic orbital electron populations 1.69979 1.04855 1.24897 1.57216 1.24808 0.95718 0.97634 1.02469 0.86130 0.78545 0.83627 0.77531 1.21672 1.21712 1.20751 1.19059 0.90388 0.82539 1.43551 0.90556 1.44492 1.01803 0.99926 1.87094 1.21125 0.84257 0.88481 1.00881 1.22919 0.96056 0.99385 0.99497 1.22349 0.97578 0.91684 0.99823 0.90771 1.21465 0.93895 0.94505 1.00763 0.90862 1.21594 0.98294 0.94925 1.00509 1.21929 0.97401 0.96250 1.01755 1.21784 0.83537 0.96650 0.99757 1.48159 1.19362 1.12688 1.54119 1.20522 0.83348 0.88336 0.77540 1.90720 1.26142 1.71667 1.53188 1.21631 1.00559 0.93269 1.01991 1.19749 0.98680 0.86448 1.01634 1.23716 0.91743 0.98887 0.99683 1.22810 1.03815 0.91222 1.07434 1.26049 0.87623 1.01603 0.98929 1.84854 1.36412 1.16233 1.59335 1.73854 1.22543 0.91695 1.18597 1.21741 0.99736 0.78796 1.00270 1.21561 0.94128 0.85999 0.96445 0.93832 0.93759 0.94171 0.92400 0.92570 0.90998 0.91787 0.90738 0.91447 0.91213 0.90016 0.88348 0.88868 0.88662 0.88882 0.81035 0.76725 0.91575 0.88588 0.96651 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 10.31 55.49 0.57 -27.26 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.94 3.39 -169.94 -0.58 -16.52 16 10 C 0.18 4.47 5.38 -3.07 -0.02 4.45 16 11 C -0.14 -2.71 5.38 -24.90 -0.13 -2.85 16 12 C -0.09 -1.62 2.58 -88.35 -0.23 -1.85 16 13 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 14 C -0.09 -1.18 1.86 -90.50 -0.17 -1.35 16 15 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 16 C -0.12 -1.30 5.05 -26.69 -0.13 -1.43 16 17 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 18 C 0.11 0.86 6.34 -3.71 -0.02 0.84 16 19 N -0.61 -6.85 2.97 -172.78 -0.51 -7.37 16 20 C 0.51 6.20 7.70 -10.98 -0.08 6.12 16 21 O -0.54 -8.53 15.40 5.55 0.09 -8.45 16 22 C -0.13 -1.16 4.02 -27.88 -0.11 -1.28 16 23 C -0.03 -0.24 5.10 -27.88 -0.14 -0.38 16 24 C 0.02 0.16 6.59 -82.10 -0.54 -0.38 16 25 C -0.23 -1.39 11.12 -39.38 -0.44 -1.83 16 26 C -0.06 -0.29 12.30 29.74 0.37 0.08 16 27 O 0.10 0.79 11.20 17.18 0.19 0.98 16 28 N -0.36 -3.59 12.06 33.42 0.40 -3.19 16 29 C 0.12 1.52 5.38 -3.71 -0.02 1.50 16 30 C 0.14 3.02 5.96 -2.41 -0.01 3.00 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.04 1.23 7.38 -51.93 -0.38 0.84 16 33 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 36 H 0.07 0.86 7.46 -51.93 -0.39 0.47 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 42 H 0.10 0.83 7.70 -51.93 -0.40 0.43 16 43 H 0.09 0.65 7.94 -51.93 -0.41 0.23 16 44 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 46 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.22 0.06 8.06 -52.48 -0.42 -0.37 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 1.46 6.38 -51.93 -0.33 1.13 16 50 H 0.02 0.33 7.99 -51.93 -0.41 -0.08 16 51 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -34.94 400.69 -9.40 -44.34 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -8.47 Total: -2.38 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.10 Total: -3.75 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.12 Total: -54.33 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.28 Total: -7.47 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.94 -9.40 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961202907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.608 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds