Wall clock time and date at job start Wed Apr 1 2020 04:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.65111 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27257 * 181.02583 * 10 9 7 12 12 C 1.55150 * 102.94509 * 22.18903 * 11 10 9 13 13 H 1.09006 * 111.00336 * 82.57404 * 12 11 10 14 14 C 1.52999 * 111.01025 * 206.38609 * 12 11 10 15 15 H 1.09004 * 109.49415 * 60.06104 * 14 12 11 16 16 C 1.53039 * 109.50186 * 180.16446 * 14 12 11 17 17 C 1.53039 * 109.53535 * 181.32042 * 16 14 12 18 18 C 1.53192 * 109.31351 * 298.63023 * 17 16 14 19 19 N 1.46919 * 108.77234 * 54.63627 * 18 17 16 20 20 C 1.34780 * 120.62926 * 126.41381 * 19 18 17 21 21 O 1.21283 * 120.00599 * 179.97438 * 20 19 18 22 22 C 1.50702 * 119.99845 * 359.97438 * 20 19 18 23 23 C 1.52995 * 109.47289 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.47289 * 179.97438 * 23 22 20 25 25 C 1.41383 * 126.80174 * 124.71290 * 24 23 22 26 26 C 1.35452 * 103.98083 * 179.88907 * 25 24 23 27 27 O 1.34038 * 106.44881 * 0.36643 * 26 25 24 28 28 N 1.20918 * 111.56494 * 359.75093 * 27 26 25 29 29 C 1.46923 * 118.74515 * 306.39538 * 19 18 17 30 30 C 1.47422 * 125.64544 * 179.71095 * 9 7 2 31 31 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88272 * 300.44289 * 10 9 7 33 33 H 1.08998 * 109.88129 * 61.44856 * 10 9 7 34 34 H 1.09003 * 110.72524 * 140.55669 * 11 10 9 35 35 H 1.09001 * 110.71935 * 263.65117 * 11 10 9 36 36 H 1.09002 * 109.45359 * 301.33657 * 16 14 12 37 37 H 1.08993 * 109.45818 * 61.29462 * 16 14 12 38 38 H 1.09005 * 109.49260 * 178.68536 * 17 16 14 39 39 H 1.08994 * 109.50440 * 58.58771 * 17 16 14 40 40 H 1.09004 * 109.58427 * 294.85744 * 18 17 16 41 41 H 1.08995 * 109.70400 * 174.50235 * 18 17 16 42 42 H 1.08999 * 109.47086 * 300.00125 * 22 20 19 43 43 H 1.09003 * 109.47098 * 60.00076 * 22 20 19 44 44 H 1.08999 * 109.47346 * 300.00196 * 23 22 20 45 45 H 1.08999 * 109.47265 * 60.00258 * 23 22 20 46 46 H 1.07993 * 128.00502 * 0.02562 * 25 24 23 47 47 H 1.08004 * 126.77350 * 180.09350 * 26 25 24 48 48 H 1.09001 * 109.58101 * 293.81895 * 29 19 18 49 49 H 1.08999 * 109.71045 * 173.46939 * 29 19 18 50 50 H 1.08996 * 110.37059 * 274.74940 * 30 9 7 51 51 H 1.09001 * 110.36609 * 37.07235 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 0.0263 12 6 0.8514 -4.6560 0.6119 13 1 0.8557 -4.5961 1.7003 14 6 1.0364 -6.1011 0.1446 15 1 1.0989 -6.1265 -0.9433 16 6 2.3238 -6.6712 0.7444 17 6 2.5267 -8.1057 0.2512 18 6 1.3519 -8.9721 0.7158 19 7 0.0990 -8.3508 0.2655 20 6 -0.8002 -9.0572 -0.4479 21 8 -1.8310 -8.5331 -0.8135 22 6 -0.5248 -10.4985 -0.7914 23 6 -1.6953 -11.0630 -1.5988 24 6 -1.4196 -12.5041 -1.9428 25 6 -2.2445 -13.6160 -1.6563 26 6 -1.5626 -14.6694 -2.1662 27 8 -0.4336 -14.1727 -2.6909 28 7 -0.3721 -12.9724 -2.5577 29 6 -0.1553 -6.9448 0.6079 30 6 1.9334 -3.7311 -0.0050 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5582 -2.0521 0.8826 33 1 -0.5539 -2.0822 -0.9014 34 1 -1.2990 -4.2515 0.6757 35 1 -0.6340 -4.4176 -0.9808 36 1 3.1706 -6.0580 0.4360 37 1 2.2502 -6.6680 1.8318 38 1 3.4557 -8.5030 0.6601 39 1 2.5756 -8.1127 -0.8376 40 1 1.3557 -9.0399 1.8037 41 1 1.4394 -9.9705 0.2872 42 1 0.3891 -10.5630 -1.3819 43 1 -0.4058 -11.0744 0.1264 44 1 -2.6090 -10.9985 -1.0080 45 1 -1.8147 -10.4873 -2.5166 46 1 -3.1985 -13.6234 -1.1503 47 1 -1.8663 -15.7058 -2.1491 48 1 -0.2745 -6.8474 1.6870 49 1 -1.0616 -6.6029 0.1080 50 1 2.1629 -4.0395 -1.0249 51 1 2.8351 -3.7419 0.6074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961202907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:35 Heat of formation + Delta-G solvation = 17.253908 kcal Electronic energy + Delta-G solvation = -30445.856374 eV Core-core repulsion = 26347.757780 eV Total energy + Delta-G solvation = -4098.098594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.85054 -41.39811 -39.74153 -38.06571 -36.29627 -35.21145 -33.71556 -33.07046 -32.54764 -32.04239 -30.66684 -28.98807 -27.13343 -26.59898 -25.32338 -24.03027 -23.89591 -22.34598 -21.68429 -21.48586 -20.84367 -19.82160 -18.89959 -18.78345 -18.45983 -17.99034 -17.02069 -16.85151 -16.75453 -16.32828 -15.78245 -15.63506 -15.43571 -15.09666 -14.92830 -14.58191 -14.24874 -14.18573 -13.98448 -13.86160 -13.79931 -13.60529 -13.47455 -13.29375 -13.16453 -12.82339 -12.75739 -12.62548 -12.30596 -12.12944 -12.08795 -12.00104 -11.91755 -11.75357 -11.71893 -11.42319 -11.36977 -11.07201 -10.97427 -10.75552 -10.72538 -10.50276 -9.62159 -8.91007 -7.85772 -5.21873 0.67363 1.31338 1.43539 1.46387 1.55085 1.57819 1.98896 2.48666 2.53122 3.18630 3.31964 3.47711 3.58710 3.66760 3.74634 3.82396 3.91289 4.01957 4.08715 4.16777 4.17677 4.24497 4.32211 4.38333 4.41985 4.47539 4.55350 4.61984 4.64458 4.70281 4.73526 4.79235 4.86370 4.88812 4.92311 4.93167 4.96524 5.04792 5.06115 5.14956 5.17582 5.21837 5.34929 5.40913 5.44102 5.54541 5.55539 5.65353 5.75747 6.18790 6.40869 7.08779 7.13431 7.39891 7.77142 8.42734 9.24920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.001809 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.706731 B =15471.752098 C =15935.709090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.630 5.630 10 C 0.185 3.815 11 C -0.126 4.126 12 C -0.075 4.075 13 H 0.081 0.919 14 C -0.074 4.074 15 H 0.056 0.944 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.102 3.898 19 N -0.609 5.609 20 C 0.509 3.491 21 O -0.586 6.586 22 C -0.121 4.121 23 C -0.024 4.024 24 C 0.004 3.996 25 C -0.243 4.243 26 C -0.042 4.042 27 O 0.086 5.914 28 N -0.396 5.396 29 C 0.120 3.880 30 C 0.141 3.859 31 H 0.246 0.754 32 H 0.011 0.989 33 H -0.002 1.002 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.193 0.807 47 H 0.261 0.739 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.015 0.985 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -34.950 2.183 35.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.060 3.940 11 C -0.164 4.164 12 C -0.095 4.095 13 H 0.100 0.900 14 C -0.094 4.094 15 H 0.074 0.926 16 C -0.151 4.151 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.341 5.341 20 C 0.299 3.701 21 O -0.467 6.467 22 C -0.161 4.161 23 C -0.062 4.062 24 C -0.154 4.154 25 C -0.264 4.264 26 C -0.123 4.123 27 O 0.021 5.979 28 N -0.102 5.102 29 C -0.003 4.003 30 C 0.017 3.983 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.017 0.983 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.210 0.790 47 H 0.277 0.723 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.033 0.967 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.539 -33.918 1.503 33.956 hybrid contribution -0.786 1.608 0.001 1.790 sum -0.248 -32.310 1.504 32.346 Atomic orbital electron populations 1.70221 1.06453 1.25217 1.58428 1.25732 0.96659 1.01281 1.02737 0.85032 0.77717 0.78879 0.77434 1.21429 1.22032 1.18990 1.19509 0.91075 0.83792 1.42810 0.89786 1.44840 1.02406 1.01416 1.86932 1.20874 0.83990 0.91851 0.97289 1.22753 0.98107 0.95247 1.00340 1.22224 0.94330 0.93145 0.99803 0.90044 1.21298 0.96018 0.92304 0.99787 0.92568 1.21583 0.96060 0.96360 1.01127 1.21905 0.98953 0.94652 1.01256 1.22066 0.81470 0.97289 1.01116 1.48253 1.20377 1.11834 1.53647 1.21128 0.82714 0.89510 0.76753 1.90701 1.28179 1.72802 1.54971 1.21577 1.00488 0.90981 1.03055 1.19645 0.99032 0.86810 1.00725 1.23807 0.92387 0.99107 1.00096 1.23137 1.04622 0.90582 1.08099 1.26883 0.85796 1.03180 0.96450 1.84804 1.37763 1.15661 1.59652 1.73853 1.23709 0.92685 1.19964 1.21531 0.98068 0.80042 1.00617 1.21744 0.95451 0.84294 0.96850 0.94491 0.97080 0.98350 0.90597 0.92513 0.91766 0.90509 0.87995 0.92435 0.89205 0.87686 0.87856 0.86331 0.88412 0.91088 0.78982 0.72319 0.90257 0.91256 0.96709 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 10.31 21.65 0.22 -59.81 16 2 C -0.07 -4.24 5.49 84.86 0.47 -3.77 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.24 -14.15 10.28 84.04 0.86 -13.28 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 9 N -0.63 -33.96 3.39 -691.57 -2.35 -36.31 16 10 C 0.19 9.80 5.38 86.73 0.47 10.27 16 11 C -0.13 -5.00 5.38 31.78 0.17 -4.83 16 12 C -0.08 -2.54 2.58 -9.32 -0.02 -2.57 16 13 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 14 C -0.07 -1.95 1.86 -10.72 -0.02 -1.97 16 15 H 0.06 1.68 8.07 -2.38 -0.02 1.66 16 16 C -0.11 -2.25 5.05 30.62 0.15 -2.10 16 17 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 18 C 0.10 1.30 6.34 86.36 0.55 1.85 16 19 N -0.61 -12.56 2.97 -818.92 -2.43 -15.00 16 20 C 0.51 11.86 7.70 87.66 0.67 12.54 16 21 O -0.59 -18.91 15.40 -3.04 -0.05 -18.95 16 22 C -0.12 -1.91 4.02 29.85 0.12 -1.79 16 23 C -0.02 -0.41 5.10 29.85 0.15 -0.26 16 24 C 0.00 0.07 6.59 43.58 0.29 0.35 16 25 C -0.24 -2.38 11.12 22.40 0.25 -2.13 16 26 C -0.04 -0.28 12.30 67.18 0.83 0.55 16 27 O 0.09 1.24 11.20 71.65 0.80 2.04 16 28 N -0.40 -7.45 12.06 -49.56 -0.60 -8.05 16 29 C 0.12 2.99 5.38 86.36 0.46 3.46 16 30 C 0.14 5.89 5.96 86.94 0.52 6.41 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.01 0.64 7.38 -2.39 -0.02 0.63 16 33 H 0.00 -0.11 7.50 -2.39 -0.02 -0.12 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 36 H 0.06 1.39 7.46 -2.39 -0.02 1.37 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.10 0.90 5.93 -2.39 -0.01 0.89 16 42 H 0.10 1.57 7.70 -2.39 -0.02 1.55 16 43 H 0.12 1.28 7.94 -2.39 -0.02 1.26 16 44 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 45 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 46 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.26 -1.02 8.06 -2.91 -0.02 -1.04 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.07 2.13 6.38 -2.39 -0.02 2.11 16 50 H 0.02 0.63 7.99 -2.39 -0.02 0.61 16 51 H 0.05 1.83 8.05 -2.39 -0.02 1.82 16 Total: -1.00 -81.02 400.69 4.64 -76.38 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.91 Total: 9.41 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.10 Total: 1.05 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.15 Total: -119.17 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.76 Total: -16.91 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -81.02 4.64 -76.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961202907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.636 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds