Wall clock time and date at job start Wed Apr 1 2020 04:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48498 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47321 * 300.00099 * 3 2 1 6 6 H 1.48500 * 109.46846 * 60.00412 * 3 2 1 7 7 C 1.38814 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99481 * 163.06628 * 7 2 1 9 9 N 1.36929 * 120.00178 * 343.06133 * 7 2 1 10 10 C 1.46926 * 120.62987 * 331.84989 * 9 7 2 11 11 C 1.53193 * 108.77771 * 233.58639 * 10 9 7 12 12 C 1.53048 * 109.31175 * 305.36821 * 11 10 9 13 13 C 1.53037 * 109.53761 * 61.36034 * 12 11 10 14 14 H 1.09000 * 109.52560 * 58.60882 * 13 12 11 15 15 C 1.53002 * 109.49631 * 178.68278 * 13 12 11 16 16 C 1.53045 * 109.46025 * 179.83994 * 15 13 12 17 17 C 1.53193 * 109.30885 * 181.37101 * 16 15 13 18 18 N 1.46918 * 108.77829 * 305.36390 * 17 16 15 19 19 C 1.34777 * 120.63239 * 233.58703 * 18 17 16 20 20 O 1.21284 * 119.99716 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00318 * 180.02562 * 19 18 17 22 22 C 1.50694 * 109.47518 * 179.97438 * 21 19 18 23 23 C 1.41384 * 126.80254 * 124.99956 * 22 21 19 24 24 C 1.35451 * 103.98501 * 180.02562 * 23 22 21 25 25 O 1.34041 * 106.44854 * 359.97438 * 24 23 22 26 26 N 1.20925 * 111.56101 * 359.71462 * 25 24 23 27 27 C 1.46927 * 118.73714 * 53.86188 * 18 17 16 28 28 C 1.53040 * 109.44832 * 299.90236 * 15 13 12 29 29 C 1.46930 * 120.63367 * 151.82912 * 9 7 2 30 30 H 0.96997 * 120.00388 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58738 * 353.37481 * 10 9 7 32 32 H 1.09007 * 109.58440 * 113.65760 * 10 9 7 33 33 H 1.09004 * 109.49585 * 65.31663 * 11 10 9 34 34 H 1.08994 * 109.50031 * 185.41579 * 11 10 9 35 35 H 1.09000 * 109.45802 * 301.34288 * 12 11 10 36 36 H 1.08997 * 109.45866 * 181.38300 * 12 11 10 37 37 H 1.08999 * 109.45968 * 59.86686 * 15 13 12 38 38 H 1.08997 * 109.49644 * 61.42233 * 16 15 13 39 39 H 1.08997 * 109.49827 * 301.32704 * 16 15 13 40 40 H 1.09005 * 109.58379 * 185.57536 * 17 16 15 41 41 H 1.09004 * 109.70233 * 65.22785 * 17 16 15 42 42 H 1.09002 * 109.47221 * 59.99808 * 21 19 18 43 43 H 1.09000 * 109.47341 * 300.00163 * 21 19 18 44 44 H 1.07996 * 128.00754 * 0.03962 * 23 22 21 45 45 H 1.08004 * 126.77287 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.58456 * 65.93280 * 27 18 17 47 47 H 1.09003 * 109.58591 * 186.34959 * 27 18 17 48 48 H 1.08997 * 109.49729 * 298.56933 * 28 15 13 49 49 H 1.09001 * 109.49844 * 58.66943 * 28 15 13 50 50 H 1.09001 * 109.58002 * 6.62589 * 29 9 7 51 51 H 1.09001 * 109.70401 * 246.27242 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3701 -2.3625 0.3444 10 6 0.2263 -2.3408 1.2663 11 6 0.4978 -3.3207 2.4121 12 6 0.8123 -4.7020 1.8330 13 6 2.0675 -4.6179 0.9616 14 1 2.9030 -4.2549 1.5603 15 6 2.4000 -6.0057 0.4098 16 6 3.6530 -5.9199 -0.4647 17 6 3.9629 -7.3042 -1.0430 18 7 4.0632 -8.2668 0.0624 19 6 5.1552 -9.0450 0.1983 20 8 6.0673 -8.9541 -0.5960 21 6 5.2430 -10.0281 1.3371 22 6 6.5534 -10.7684 1.2619 23 6 7.5275 -10.8717 2.2814 24 6 8.5032 -11.6297 1.7262 25 8 8.0942 -11.9249 0.4844 26 7 7.0101 -11.4443 0.2475 27 6 2.9479 -8.3694 1.0133 28 6 2.6517 -6.9693 1.5717 29 6 1.8138 -3.6528 -0.2006 30 1 -0.4850 0.8400 0.0004 31 1 0.0994 -1.3353 1.6676 32 1 -0.6774 -2.6386 0.7344 33 1 1.3476 -2.9695 2.9975 34 1 -0.3827 -3.3860 3.0512 35 1 -0.0280 -5.0418 1.2275 36 1 0.9817 -5.4069 2.6469 37 1 1.5640 -6.3684 -0.1882 38 1 4.4951 -5.5808 0.1385 39 1 3.4811 -5.2157 -1.2787 40 1 4.9080 -7.2705 -1.5852 41 1 3.1640 -7.6070 -1.7199 42 1 4.4198 -10.7392 1.2674 43 1 5.1815 -9.4929 2.2846 44 1 7.4999 -10.4452 3.2732 45 1 9.4278 -11.9364 2.1926 46 1 2.0662 -8.7560 0.5020 47 1 3.2230 -9.0388 1.8283 48 1 3.5033 -6.6203 2.1558 49 1 1.7671 -7.0120 2.2072 50 1 2.7345 -3.5129 -0.7671 51 1 1.0419 -4.0612 -0.8529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961350976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:41 Heat of formation + Delta-G solvation = 15.885123 kcal Electronic energy + Delta-G solvation = -30934.059755 eV Core-core repulsion = 26835.901806 eV Total energy + Delta-G solvation = -4098.157949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.83695 -41.34385 -39.86052 -38.04978 -35.59856 -35.55558 -33.91565 -32.70107 -32.50228 -31.96479 -30.92374 -29.83722 -27.23768 -26.08970 -24.70865 -24.04202 -23.45509 -23.04661 -22.38838 -21.26278 -20.56962 -19.87505 -18.76568 -18.65347 -18.54737 -17.91487 -16.91950 -16.87543 -16.60860 -15.90480 -15.76659 -15.53989 -15.16445 -15.02835 -14.82914 -14.73115 -14.50266 -14.22691 -14.16316 -14.03010 -13.86693 -13.63112 -13.39865 -13.26358 -13.02514 -12.89934 -12.80263 -12.39792 -12.20958 -12.19285 -12.14750 -11.99379 -11.76767 -11.66755 -11.48746 -11.34314 -11.18746 -10.97796 -10.76757 -10.67054 -10.53228 -10.49091 -9.64208 -8.65480 -7.88032 -5.33418 0.71586 1.29656 1.42666 1.44472 1.55038 1.58020 2.04229 2.49117 2.55469 3.19558 3.25379 3.50256 3.63912 3.73686 3.81573 3.87907 3.98418 4.16414 4.21857 4.25119 4.31530 4.37292 4.40200 4.45664 4.47010 4.52004 4.59648 4.63490 4.67587 4.78345 4.83076 4.89077 4.92326 4.92847 4.97867 5.04760 5.12343 5.15167 5.17959 5.21793 5.24982 5.38600 5.43546 5.44094 5.54991 5.61058 5.64462 5.70885 5.83188 6.38996 6.39840 7.13372 7.15005 7.44562 7.88227 8.38702 9.17462 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.002029 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.582254 B =13797.779141 C =14344.631126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.053 4.053 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.096 4.096 13 C -0.083 4.083 14 H 0.052 0.948 15 C -0.071 4.071 16 C -0.123 4.123 17 C 0.117 3.883 18 N -0.607 5.607 19 C 0.508 3.492 20 O -0.586 6.586 21 C -0.056 4.056 22 C 0.004 3.996 23 C -0.235 4.235 24 C -0.055 4.055 25 O 0.082 5.918 26 N -0.389 5.389 27 C 0.103 3.897 28 C -0.125 4.125 29 C 0.149 3.851 30 H 0.249 0.751 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.203 0.797 45 H 0.260 0.740 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.044 0.956 51 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 -26.080 10.799 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.078 0.922 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.133 4.133 13 C -0.103 4.103 14 H 0.071 0.929 15 C -0.090 4.090 16 C -0.161 4.161 17 C -0.006 4.006 18 N -0.340 5.340 19 C 0.297 3.703 20 O -0.466 6.466 21 C -0.096 4.096 22 C -0.155 4.155 23 C -0.256 4.256 24 C -0.136 4.136 25 O 0.016 5.984 26 N -0.093 5.093 27 C -0.018 4.018 28 C -0.163 4.163 29 C 0.024 3.976 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.220 0.780 45 H 0.276 0.724 46 H 0.105 0.895 47 H 0.136 0.864 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.062 0.938 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 9.318 -26.164 9.135 29.237 hybrid contribution 0.338 2.020 0.136 2.053 sum 9.656 -24.143 9.271 27.606 Atomic orbital electron populations 1.70191 1.06583 1.25681 1.55635 1.25782 0.96073 1.01428 1.01528 0.85258 0.78556 0.80081 0.76886 1.19340 1.21887 1.21461 1.19488 0.92595 0.86259 1.40597 0.92163 1.44340 1.35955 1.02359 1.50892 1.20616 0.87574 0.97693 0.89309 1.22030 1.00549 0.96821 0.97834 1.21463 0.96843 0.95947 0.99090 1.21465 0.97675 0.94440 0.96694 0.92934 1.21063 0.96863 0.94216 0.96834 1.21903 0.98282 0.95927 0.99970 1.21489 1.01994 0.88154 0.88954 1.48232 1.18462 1.37917 1.29350 1.20995 0.81255 0.81542 0.86484 1.90721 1.39701 1.69843 1.46337 1.20188 0.93448 0.96552 0.99410 1.23471 1.00223 1.00746 0.91094 1.23144 0.93818 1.05473 1.03194 1.26920 1.03047 0.99492 0.84093 1.84810 1.25862 1.56467 1.31303 1.73890 0.97261 1.13712 1.24462 1.22216 0.88856 0.98133 0.92612 1.22081 1.03227 0.93686 0.97259 1.21114 0.96401 0.85871 0.94234 0.94154 0.93503 0.98910 0.93536 0.91366 0.92714 0.89415 0.90608 0.92922 0.91481 0.91627 0.90461 0.84657 0.83013 0.78003 0.72447 0.89524 0.86377 0.91734 0.88148 0.93755 0.97392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 11.20 21.65 0.24 -56.02 16 2 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 3 Si 0.96 45.82 29.59 68.60 2.03 47.85 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.26 -14.59 9.58 84.04 0.81 -13.78 16 8 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 9 N -0.61 -31.12 2.99 -699.09 -2.09 -33.21 16 10 C 0.17 8.42 5.30 86.36 0.46 8.88 16 11 C -0.13 -4.78 6.08 30.67 0.19 -4.59 16 12 C -0.10 -2.70 4.86 30.62 0.15 -2.55 16 13 C -0.08 -2.49 1.92 -10.72 -0.02 -2.52 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C -0.07 -1.55 1.74 -10.76 -0.02 -1.57 16 16 C -0.12 -3.01 5.05 30.67 0.15 -2.85 16 17 C 0.12 2.70 6.43 86.36 0.56 3.26 16 18 N -0.61 -11.72 2.97 -818.07 -2.43 -14.14 16 19 C 0.51 11.72 7.69 87.66 0.67 12.39 16 20 O -0.59 -19.95 15.02 -3.04 -0.05 -19.99 16 21 C -0.06 -0.78 4.64 29.10 0.14 -0.64 16 22 C 0.00 0.07 6.10 43.58 0.27 0.34 16 23 C -0.24 -2.84 11.12 22.40 0.25 -2.59 16 24 C -0.05 -0.60 12.30 67.18 0.83 0.22 16 25 O 0.08 1.69 11.20 71.62 0.80 2.49 16 26 N -0.39 -9.92 11.48 -49.55 -0.57 -10.49 16 27 C 0.10 1.15 6.37 86.51 0.55 1.70 16 28 C -0.12 -1.82 5.06 30.82 0.16 -1.66 16 29 C 0.15 6.09 5.27 86.36 0.46 6.54 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.05 2.60 6.06 -2.39 -0.01 2.58 16 32 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.81 6.33 -2.39 -0.02 1.80 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.84 6.49 -2.39 -0.02 1.82 16 40 H 0.07 1.85 7.01 -2.38 -0.02 1.83 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.14 1.20 7.93 -2.39 -0.02 1.18 16 43 H 0.15 0.93 7.70 -2.39 -0.02 0.91 16 44 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 45 H 0.26 0.01 8.06 -2.91 -0.02 -0.01 16 46 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.12 0.52 5.93 -2.39 -0.01 0.51 16 48 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.10 1.14 6.33 -2.39 -0.02 1.12 16 50 H 0.04 1.84 6.52 -2.39 -0.02 1.82 16 51 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -82.97 392.36 4.86 -78.11 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.92 Total: 7.43 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.00 Total: -2.02 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.85 Total: -113.86 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.76 Total: -17.50 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -82.97 4.86 -78.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961350976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.992 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds