Wall clock time and date at job start Wed Apr 1 2020 04:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86811 * 119.99491 * 2 1 4 4 H 1.48494 * 109.46728 * 240.00018 * 3 2 1 5 5 H 1.48497 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46740 * 120.00054 * 3 2 1 7 7 C 1.38808 * 120.00688 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 194.58199 * 7 2 1 9 9 N 1.36938 * 119.99685 * 14.57789 * 7 2 1 10 10 C 1.47598 * 118.64615 * 27.78732 * 9 7 2 11 11 C 1.53938 * 112.14827 * 137.86077 * 10 9 7 12 12 C 1.50884 * 110.09448 * 319.44721 * 11 10 9 13 13 C 1.52556 * 109.35190 * 91.88262 * 12 11 10 14 14 C 1.47050 * 114.29310 * 274.93910 * 13 12 11 15 15 C 1.44584 * 118.63945 * 207.77034 * 9 7 2 16 16 H 1.09000 * 109.44885 * 150.70522 * 15 9 7 17 17 C 1.52995 * 109.45154 * 30.75369 * 15 9 7 18 18 N 1.46507 * 109.47048 * 54.94822 * 17 15 9 19 19 C 1.34776 * 119.99844 * 179.97438 * 18 17 15 20 20 O 1.21610 * 120.00226 * 359.72595 * 19 18 17 21 21 C 1.47416 * 119.99800 * 180.02562 * 19 18 17 22 22 C 1.36088 * 126.44886 * 179.75231 * 21 19 18 23 23 O 1.34260 * 106.95249 * 179.97438 * 22 21 19 24 24 C 1.34046 * 108.22277 * 359.97438 * 23 22 21 25 25 C 1.50701 * 125.37797 * 179.97438 * 24 23 22 26 26 C 1.53790 * 113.61249 * 37.47363 * 25 24 23 27 27 C 1.53779 * 87.07896 * 220.01822 * 26 25 24 28 28 C 1.53780 * 87.08359 * 25.43353 * 27 26 25 29 29 N 1.29933 * 109.24649 * 359.72564 * 24 23 22 30 30 H 0.96991 * 120.00584 * 359.97438 * 1 2 3 31 31 H 1.08997 * 108.95198 * 258.55455 * 10 9 7 32 32 H 1.09006 * 108.94387 * 17.17931 * 10 9 7 33 33 H 1.09004 * 109.36435 * 79.63366 * 11 10 9 34 34 H 1.08997 * 109.37271 * 199.38004 * 11 10 9 35 35 H 1.09002 * 109.48907 * 211.85098 * 12 11 10 36 36 H 1.09001 * 109.48528 * 331.91575 * 12 11 10 37 37 H 1.09001 * 108.51514 * 36.23123 * 13 12 11 38 38 H 1.08998 * 108.51099 * 153.87559 * 13 12 11 39 39 H 1.08997 * 109.36982 * 302.59061 * 14 13 12 40 40 H 1.09001 * 109.28392 * 183.11265 * 14 13 12 41 41 H 1.08997 * 109.47377 * 294.95274 * 17 15 9 42 42 H 1.09004 * 109.47072 * 174.94761 * 17 15 9 43 43 H 0.96999 * 119.99959 * 0.02562 * 18 17 15 44 44 H 1.08007 * 126.52614 * 359.97438 * 22 21 19 45 45 H 1.08997 * 112.85186 * 168.77823 * 25 24 23 46 46 H 1.08991 * 113.61046 * 334.56817 * 26 25 24 47 47 H 1.09004 * 113.60958 * 105.47067 * 26 25 24 48 48 H 1.08997 * 113.61651 * 270.88432 * 27 26 25 49 49 H 1.09002 * 113.69160 * 139.99518 * 27 26 25 50 50 H 1.09003 * 113.61627 * 220.01648 * 28 27 26 51 51 H 1.09000 * 113.61773 * 89.11305 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0643 -1.2171 0.2349 9 7 1.3589 -2.3688 -0.2996 10 6 0.1773 -2.3132 -1.1824 11 6 0.1664 -3.4592 -2.2101 12 6 1.5580 -3.6878 -2.7466 13 6 2.2584 -4.7464 -1.9003 14 6 2.9100 -4.2207 -0.6914 15 6 1.8570 -3.6043 0.2623 16 1 1.0308 -4.3035 0.3913 17 6 2.5028 -3.3225 1.6204 18 7 1.5418 -2.6321 2.4842 19 6 1.8929 -2.2815 3.7374 20 8 3.0056 -2.5426 4.1527 21 6 0.9257 -1.5873 4.6068 22 6 1.1376 -1.1795 5.8877 23 8 0.0036 -0.5941 6.3048 24 6 -0.8852 -0.6404 5.3025 25 6 -2.2884 -0.0930 5.3546 26 6 -2.4074 1.2227 6.1418 27 6 -3.7252 0.6713 6.7112 28 6 -3.1596 -0.7342 6.4476 29 7 -0.3443 -1.2271 4.2771 30 1 -0.4850 0.8399 0.0004 31 1 -0.7237 -2.3762 -0.5723 32 1 0.1771 -1.3614 -1.7137 33 1 -0.1906 -4.3709 -1.7311 34 1 -0.4984 -3.1996 -3.0340 35 1 1.4978 -4.0294 -3.7799 36 1 2.1219 -2.7560 -2.7035 37 1 1.5226 -5.4928 -1.6010 38 1 3.0152 -5.2349 -2.5140 39 1 3.6327 -3.4553 -0.9741 40 1 3.4287 -5.0318 -0.1804 41 1 3.3826 -2.6944 1.4811 42 1 2.7980 -4.2636 2.0846 43 1 0.6527 -2.4280 2.1546 44 1 2.0452 -1.3032 6.4600 45 1 -2.7675 -0.0628 4.3761 46 1 -1.6285 1.3542 6.8928 47 1 -2.5387 2.1001 5.5084 48 1 -4.5978 0.9117 6.1038 49 1 -3.8718 0.8918 7.7685 50 1 -3.8980 -1.4367 6.0612 51 1 -2.5862 -1.1378 7.2822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969105469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:47 Heat of formation + Delta-G solvation = 21.518074 kcal Electronic energy + Delta-G solvation = -32052.270147 eV Core-core repulsion = 27954.356460 eV Total energy + Delta-G solvation = -4097.913686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.19176 -39.07600 -38.69758 -37.89675 -34.57373 -34.41961 -33.40632 -31.64412 -30.64384 -30.43154 -27.13349 -26.14335 -25.85350 -25.66991 -23.73261 -23.36278 -21.91946 -21.38907 -20.26818 -19.77370 -19.19035 -19.02386 -17.77818 -16.57996 -16.49292 -16.05862 -15.63134 -15.52644 -15.33324 -14.88896 -14.59252 -14.28019 -13.97386 -13.56860 -13.51077 -13.30697 -12.96385 -12.75323 -12.74673 -12.69777 -12.57287 -12.03552 -11.90836 -11.47668 -11.22758 -11.14884 -11.05094 -10.98569 -10.78662 -10.68429 -10.60125 -10.57545 -10.42490 -10.17394 -9.99040 -9.94850 -9.68728 -9.62223 -9.52263 -9.38342 -8.75621 -8.34973 -8.13900 -6.62634 -5.74582 -3.18609 1.39092 2.35279 2.74115 3.40266 3.44566 3.47949 3.71939 3.91573 4.10781 4.35253 4.44194 4.52720 4.65923 4.77281 5.09054 5.25145 5.30104 5.41730 5.45133 5.48945 5.51571 5.52784 5.55024 5.68822 5.69048 5.75696 5.79217 5.82402 5.92485 5.93983 6.05714 6.12259 6.18134 6.22394 6.28765 6.39658 6.42035 6.60615 6.65466 6.69005 6.74923 6.79179 6.88898 7.03376 7.14132 7.26079 7.47289 7.73485 7.78545 7.88170 8.38554 8.49410 8.90333 9.27319 9.91863 10.37066 11.32071 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.003510 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.003354 B = 7975.341200 C = 8476.757729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.016 3.984 3 Si 0.890 3.110 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.582 5.582 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.100 4.100 14 C -0.136 4.136 15 C 0.174 3.826 16 H 0.044 0.956 17 C 0.127 3.873 18 N -0.667 5.667 19 C 0.593 3.407 20 O -0.565 6.565 21 C -0.053 4.053 22 C -0.009 4.009 23 O -0.201 6.201 24 C 0.198 3.802 25 C -0.016 4.016 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.130 4.130 29 N -0.437 5.437 30 H 0.252 0.748 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.421 0.579 44 H 0.227 0.773 45 H 0.134 0.866 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -3.341 9.064 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.183 4.183 3 Si 0.720 3.280 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.304 5.304 10 C 0.057 3.943 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.065 3.935 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.315 5.315 19 C 0.377 3.623 20 O -0.446 6.446 21 C -0.174 4.174 22 C -0.083 4.083 23 O -0.087 6.087 24 C -0.011 4.011 25 C -0.035 4.035 26 C -0.171 4.171 27 C -0.176 4.176 28 C -0.168 4.168 29 N -0.165 5.165 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.259 0.741 44 H 0.243 0.757 45 H 0.152 0.848 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.538 -3.493 8.721 10.905 hybrid contribution 0.646 1.209 0.281 1.400 sum -4.892 -2.284 9.002 10.497 Atomic orbital electron populations 1.70015 1.04829 1.25271 1.53645 1.24897 0.95121 0.97771 1.00527 0.86572 0.79116 0.84276 0.78028 1.21148 1.21806 1.21186 1.18928 0.91898 0.84540 1.43013 0.92115 1.43683 1.32645 1.01619 1.52487 1.20991 0.88204 0.95428 0.89700 1.22075 0.96077 1.00536 0.99524 1.20947 0.97117 0.99822 0.96511 1.20274 0.98879 0.97923 0.96707 1.21369 0.99566 0.99727 0.97031 1.20497 0.93941 0.89597 0.89505 0.93777 1.21561 0.92826 0.95172 0.90154 1.45540 1.18568 1.56049 1.11311 1.16705 0.85035 0.78639 0.81909 1.90740 1.20965 1.57558 1.75294 1.21985 0.93451 1.07063 0.94865 1.25157 0.89473 0.97484 0.96139 1.84282 1.21170 1.61261 1.42013 1.26038 0.94260 0.99719 0.81095 1.21253 0.83907 0.96644 1.01724 1.23015 0.98315 0.96338 0.99476 1.22810 0.97294 0.95816 1.01696 1.23012 0.98628 0.97376 0.97802 1.70926 1.06335 1.12787 1.26495 0.93798 0.95772 0.90775 0.93851 0.93317 0.94266 0.90761 0.93532 0.94141 0.91799 0.93347 0.91189 0.93002 0.74092 0.75688 0.84781 0.89379 0.90278 0.89506 0.90843 0.90288 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.03 55.49 0.61 -23.61 16 2 C 0.02 0.43 4.89 -17.43 -0.09 0.34 16 3 Si 0.89 21.88 29.58 -169.99 -5.03 16.85 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.25 -6.43 7.64 -15.06 -0.12 -6.54 16 8 H 0.06 1.60 6.72 -52.49 -0.35 1.25 16 9 N -0.58 -13.04 1.78 -164.47 -0.29 -13.33 16 10 C 0.18 4.03 4.66 -2.95 -0.01 4.02 16 11 C -0.14 -2.60 5.71 -27.30 -0.16 -2.76 16 12 C -0.11 -1.84 5.51 -28.02 -0.15 -1.99 16 13 C -0.10 -1.60 5.15 -29.81 -0.15 -1.76 16 14 C -0.14 -2.33 5.06 -28.60 -0.14 -2.48 16 15 C 0.17 3.37 2.19 -67.97 -0.15 3.22 16 16 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 17 C 0.13 2.54 4.52 -4.04 -0.02 2.53 16 18 N -0.67 -14.21 4.71 -61.38 -0.29 -14.50 16 19 C 0.59 12.61 7.81 -12.52 -0.10 12.51 16 20 O -0.56 -12.71 16.89 5.27 0.09 -12.62 16 21 C -0.05 -1.02 6.99 -83.02 -0.58 -1.60 16 22 C -0.01 -0.14 11.94 29.96 0.36 0.22 16 23 O -0.20 -2.97 10.39 6.51 0.07 -2.90 16 24 C 0.20 3.10 7.33 -13.08 -0.10 3.01 16 25 C -0.02 -0.19 4.29 -90.95 -0.39 -0.58 16 26 C -0.13 -1.29 7.63 -25.91 -0.20 -1.49 16 27 C -0.14 -1.06 8.08 -25.92 -0.21 -1.27 16 28 C -0.13 -1.18 7.63 -25.92 -0.20 -1.38 16 29 N -0.44 -8.39 11.06 -7.66 -0.08 -8.47 16 30 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.02 0.59 8.02 -51.93 -0.42 0.17 16 32 H 0.07 1.86 6.40 -51.93 -0.33 1.53 16 33 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.48 7.48 -51.93 -0.39 1.09 16 37 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.74 8.11 -51.93 -0.42 0.31 16 41 H 0.07 1.53 6.83 -51.93 -0.35 1.17 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.42 9.63 7.81 -40.82 -0.32 9.31 16 44 H 0.23 2.75 8.06 -52.48 -0.42 2.33 16 45 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 46 H 0.09 0.87 7.81 -51.93 -0.41 0.46 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -29.48 401.60 -9.65 -39.13 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.38 Total: 9.40 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.40 Total: 4.00 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.05 Total: -59.92 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.16 Total: -15.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.48 -9.65 -39.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969105469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.652 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds