Wall clock time and date at job start Wed Apr 1 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86811 * 119.99491 * 2 1 4 4 H 1.48494 * 109.46728 * 240.00018 * 3 2 1 5 5 H 1.48497 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46740 * 120.00054 * 3 2 1 7 7 C 1.38808 * 120.00688 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 194.58199 * 7 2 1 9 9 N 1.36938 * 119.99685 * 14.57789 * 7 2 1 10 10 C 1.47598 * 118.64615 * 27.78732 * 9 7 2 11 11 C 1.53938 * 112.14827 * 137.86077 * 10 9 7 12 12 C 1.50884 * 110.09448 * 319.44721 * 11 10 9 13 13 C 1.52556 * 109.35190 * 91.88262 * 12 11 10 14 14 C 1.47050 * 114.29310 * 274.93910 * 13 12 11 15 15 C 1.44584 * 118.63945 * 207.77034 * 9 7 2 16 16 H 1.09000 * 109.44885 * 150.70522 * 15 9 7 17 17 C 1.52995 * 109.45154 * 30.75369 * 15 9 7 18 18 N 1.46507 * 109.47048 * 54.94822 * 17 15 9 19 19 C 1.34776 * 119.99844 * 179.97438 * 18 17 15 20 20 O 1.21610 * 120.00226 * 359.72595 * 19 18 17 21 21 C 1.47416 * 119.99800 * 180.02562 * 19 18 17 22 22 C 1.36088 * 126.44886 * 179.75231 * 21 19 18 23 23 O 1.34260 * 106.95249 * 179.97438 * 22 21 19 24 24 C 1.34046 * 108.22277 * 359.97438 * 23 22 21 25 25 C 1.50701 * 125.37797 * 179.97438 * 24 23 22 26 26 C 1.53790 * 113.61249 * 37.47363 * 25 24 23 27 27 C 1.53779 * 87.07896 * 220.01822 * 26 25 24 28 28 C 1.53780 * 87.08359 * 25.43353 * 27 26 25 29 29 N 1.29933 * 109.24649 * 359.72564 * 24 23 22 30 30 H 0.96991 * 120.00584 * 359.97438 * 1 2 3 31 31 H 1.08997 * 108.95198 * 258.55455 * 10 9 7 32 32 H 1.09006 * 108.94387 * 17.17931 * 10 9 7 33 33 H 1.09004 * 109.36435 * 79.63366 * 11 10 9 34 34 H 1.08997 * 109.37271 * 199.38004 * 11 10 9 35 35 H 1.09002 * 109.48907 * 211.85098 * 12 11 10 36 36 H 1.09001 * 109.48528 * 331.91575 * 12 11 10 37 37 H 1.09001 * 108.51514 * 36.23123 * 13 12 11 38 38 H 1.08998 * 108.51099 * 153.87559 * 13 12 11 39 39 H 1.08997 * 109.36982 * 302.59061 * 14 13 12 40 40 H 1.09001 * 109.28392 * 183.11265 * 14 13 12 41 41 H 1.08997 * 109.47377 * 294.95274 * 17 15 9 42 42 H 1.09004 * 109.47072 * 174.94761 * 17 15 9 43 43 H 0.96999 * 119.99959 * 0.02562 * 18 17 15 44 44 H 1.08007 * 126.52614 * 359.97438 * 22 21 19 45 45 H 1.08997 * 112.85186 * 168.77823 * 25 24 23 46 46 H 1.08991 * 113.61046 * 334.56817 * 26 25 24 47 47 H 1.09004 * 113.60958 * 105.47067 * 26 25 24 48 48 H 1.08997 * 113.61651 * 270.88432 * 27 26 25 49 49 H 1.09002 * 113.69160 * 139.99518 * 27 26 25 50 50 H 1.09003 * 113.61627 * 220.01648 * 28 27 26 51 51 H 1.09000 * 113.61773 * 89.11305 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0643 -1.2171 0.2349 9 7 1.3589 -2.3688 -0.2996 10 6 0.1773 -2.3132 -1.1824 11 6 0.1664 -3.4592 -2.2101 12 6 1.5580 -3.6878 -2.7466 13 6 2.2584 -4.7464 -1.9003 14 6 2.9100 -4.2207 -0.6914 15 6 1.8570 -3.6043 0.2623 16 1 1.0308 -4.3035 0.3913 17 6 2.5028 -3.3225 1.6204 18 7 1.5418 -2.6321 2.4842 19 6 1.8929 -2.2815 3.7374 20 8 3.0056 -2.5426 4.1527 21 6 0.9257 -1.5873 4.6068 22 6 1.1376 -1.1795 5.8877 23 8 0.0036 -0.5941 6.3048 24 6 -0.8852 -0.6404 5.3025 25 6 -2.2884 -0.0930 5.3546 26 6 -2.4074 1.2227 6.1418 27 6 -3.7252 0.6713 6.7112 28 6 -3.1596 -0.7342 6.4476 29 7 -0.3443 -1.2271 4.2771 30 1 -0.4850 0.8399 0.0004 31 1 -0.7237 -2.3762 -0.5723 32 1 0.1771 -1.3614 -1.7137 33 1 -0.1906 -4.3709 -1.7311 34 1 -0.4984 -3.1996 -3.0340 35 1 1.4978 -4.0294 -3.7799 36 1 2.1219 -2.7560 -2.7035 37 1 1.5226 -5.4928 -1.6010 38 1 3.0152 -5.2349 -2.5140 39 1 3.6327 -3.4553 -0.9741 40 1 3.4287 -5.0318 -0.1804 41 1 3.3826 -2.6944 1.4811 42 1 2.7980 -4.2636 2.0846 43 1 0.6527 -2.4280 2.1546 44 1 2.0452 -1.3032 6.4600 45 1 -2.7675 -0.0628 4.3761 46 1 -1.6285 1.3542 6.8928 47 1 -2.5387 2.1001 5.5084 48 1 -4.5978 0.9117 6.1038 49 1 -3.8718 0.8918 7.7685 50 1 -3.8980 -1.4367 6.0612 51 1 -2.5862 -1.1378 7.2822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969105469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:46 Heat of formation + Delta-G solvation = 3.393468 kcal Electronic energy + Delta-G solvation = -32053.056089 eV Core-core repulsion = 27954.356460 eV Total energy + Delta-G solvation = -4098.699628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.47151 -40.68245 -39.62089 -39.42389 -36.06632 -35.86419 -35.21812 -33.22460 -32.46166 -31.70529 -28.78994 -27.46288 -27.04795 -26.59673 -25.27321 -25.06908 -23.39897 -22.54775 -21.69566 -21.16999 -20.79193 -20.24992 -19.12319 -18.08066 -17.84351 -17.55983 -17.27638 -16.77807 -16.56616 -16.27145 -16.08657 -15.94023 -15.66515 -15.21832 -15.00369 -14.79687 -14.41903 -14.26696 -13.75989 -13.70838 -13.53012 -13.40524 -13.34275 -13.19261 -12.92449 -12.83137 -12.72750 -12.42470 -12.32237 -12.03018 -11.93832 -11.78548 -11.54916 -11.44573 -11.41845 -11.39603 -11.33905 -11.25064 -11.20547 -10.90928 -10.34840 -10.10991 -9.77447 -8.53459 -7.78155 -5.20854 0.07683 0.98932 1.37960 1.40666 1.44372 1.53539 2.19742 2.38553 2.51682 2.88810 3.36913 3.54063 3.59732 3.64923 3.74447 3.85019 3.90956 4.03936 4.06004 4.08234 4.27498 4.42303 4.48370 4.49006 4.58851 4.60405 4.65161 4.71765 4.77261 4.77566 4.87289 5.00742 5.03025 5.03860 5.06243 5.10210 5.13267 5.14098 5.25232 5.27050 5.38519 5.42487 5.49739 5.54843 5.59990 5.67790 5.76428 5.79121 5.91395 6.43039 6.47859 6.72940 7.20987 7.27641 8.01710 8.40242 9.25250 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.003510 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.003354 B = 7975.341200 C = 8476.757729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.026 4.026 3 Si 0.929 3.071 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.048 0.952 9 N -0.588 5.588 10 C 0.192 3.808 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.173 3.827 16 H 0.052 0.948 17 C 0.130 3.870 18 N -0.673 5.673 19 C 0.588 3.412 20 O -0.584 6.584 21 C -0.098 4.098 22 C 0.019 3.981 23 O -0.190 6.190 24 C 0.207 3.793 25 C -0.033 4.033 26 C -0.132 4.132 27 C -0.122 4.122 28 C -0.122 4.122 29 N -0.482 5.482 30 H 0.244 0.756 31 H -0.004 1.004 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.412 0.588 44 H 0.260 0.740 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -4.594 9.812 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.223 4.223 3 Si 0.761 3.239 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.368 4.368 8 H 0.066 0.934 9 N -0.310 5.310 10 C 0.067 3.933 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.167 4.167 15 C 0.065 3.935 16 H 0.070 0.930 17 C 0.005 3.995 18 N -0.319 5.319 19 C 0.374 3.626 20 O -0.467 6.467 21 C -0.217 4.217 22 C -0.055 4.055 23 O -0.076 6.076 24 C -0.003 4.003 25 C -0.052 4.052 26 C -0.170 4.170 27 C -0.159 4.159 28 C -0.161 4.161 29 N -0.210 5.210 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.248 0.752 44 H 0.276 0.724 45 H 0.143 0.857 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.930 -4.773 9.452 12.136 hybrid contribution 0.784 1.580 0.097 1.766 sum -5.146 -3.193 9.549 11.307 Atomic orbital electron populations 1.70128 1.05355 1.24768 1.55439 1.25291 0.95630 0.99465 1.01865 0.85945 0.78049 0.82529 0.77411 1.20749 1.22147 1.22408 1.18897 0.91291 0.85614 1.40964 0.93407 1.43748 1.32384 1.01901 1.52979 1.20745 0.86983 0.95725 0.89838 1.21939 0.97418 0.99108 0.98623 1.20906 0.95842 0.98964 0.98343 1.20263 0.99733 0.97647 0.96108 1.21269 0.98393 0.99814 0.97230 1.20690 0.94812 0.88406 0.89615 0.92953 1.21603 0.91812 0.95407 0.90635 1.45627 1.18220 1.56380 1.11701 1.17025 0.85246 0.78300 0.81987 1.90703 1.21762 1.58562 1.75668 1.21893 0.93838 1.09732 0.96241 1.25726 0.90107 0.94764 0.94905 1.84327 1.20875 1.60844 1.41533 1.26803 0.95163 0.97988 0.80297 1.21642 0.82178 0.98820 1.02588 1.23052 0.99699 0.95121 0.99132 1.22774 0.96393 0.93860 1.02909 1.23020 0.98057 0.98501 0.96482 1.70874 1.06913 1.14842 1.28417 0.94693 0.98549 0.94222 0.92350 0.92052 0.91702 0.93921 0.92089 0.91724 0.93758 0.90669 0.93494 0.90965 0.75154 0.72423 0.85653 0.89381 0.90245 0.88342 0.89012 0.89493 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.46 11.03 21.65 0.24 -51.22 16 2 C -0.03 -1.40 4.89 84.86 0.41 -0.99 16 3 Si 0.93 46.33 29.58 68.60 2.03 48.36 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 7 C -0.24 -12.36 7.64 84.03 0.64 -11.72 16 8 H 0.05 2.61 6.72 -2.91 -0.02 2.59 16 9 N -0.59 -26.83 1.78 -674.28 -1.20 -28.03 16 10 C 0.19 8.72 4.66 86.49 0.40 9.12 16 11 C -0.13 -4.62 5.71 30.22 0.17 -4.45 16 12 C -0.10 -3.34 5.51 29.76 0.16 -3.17 16 13 C -0.10 -2.88 5.15 28.60 0.15 -2.73 16 14 C -0.13 -4.10 5.06 29.38 0.15 -3.95 16 15 C 0.17 6.62 2.19 45.98 0.10 6.72 16 16 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 17 C 0.13 5.22 4.52 86.38 0.39 5.61 16 18 N -0.67 -29.53 4.71 -466.37 -2.20 -31.73 16 19 C 0.59 25.66 7.81 86.66 0.68 26.33 16 20 O -0.58 -26.62 16.89 -4.06 -0.07 -26.69 16 21 C -0.10 -3.83 6.99 40.41 0.28 -3.55 16 22 C 0.02 0.58 11.94 67.32 0.80 1.38 16 23 O -0.19 -5.41 10.39 0.39 0.00 -5.41 16 24 C 0.21 6.50 7.33 88.39 0.65 7.15 16 25 C -0.03 -0.77 4.29 -11.01 -0.05 -0.82 16 26 C -0.13 -2.37 7.63 31.12 0.24 -2.13 16 27 C -0.12 -1.56 8.08 31.12 0.25 -1.31 16 28 C -0.12 -2.02 7.63 31.12 0.24 -1.78 16 29 N -0.48 -19.06 11.06 -293.05 -3.24 -22.30 16 30 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.00 -0.18 8.02 -2.39 -0.02 -0.20 16 32 H 0.04 2.06 6.40 -2.38 -0.02 2.04 16 33 H 0.06 1.88 7.32 -2.38 -0.02 1.86 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.66 7.48 -2.39 -0.02 1.64 16 37 H 0.06 1.62 7.36 -2.39 -0.02 1.60 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 41 H 0.05 2.10 6.83 -2.39 -0.02 2.08 16 42 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.41 19.65 7.81 -92.71 -0.72 18.93 16 44 H 0.26 5.80 8.06 -2.91 -0.02 5.77 16 45 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.09 1.59 7.81 -2.39 -0.02 1.57 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 48 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 49 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -66.81 401.60 1.45 -65.36 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.21 Total: 31.94 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 5.68 Total: 19.72 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -6.40 Total: -133.27 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.06 Total: -32.10 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -66.81 1.45 -65.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969105469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.752 kcal (2) G-P(sol) polarization free energy of solvation -66.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds