Wall clock time and date at job start Wed Apr 1 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99884 * 2 1 4 4 H 1.48495 * 109.47395 * 269.99862 * 3 2 1 5 5 H 1.48503 * 109.47003 * 30.00289 * 3 2 1 6 6 H 1.48502 * 109.47129 * 149.99400 * 3 2 1 7 7 C 1.38809 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99657 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00519 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00159 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47154 * 325.00189 * 10 9 7 12 12 C 1.53001 * 109.46908 * 84.99615 * 10 9 7 13 13 C 1.53004 * 109.46886 * 60.00475 * 12 10 9 14 14 C 1.52993 * 109.47648 * 59.99448 * 13 12 10 15 15 C 1.53001 * 109.47428 * 300.00221 * 14 13 12 16 16 H 1.09001 * 109.46877 * 300.00036 * 15 14 13 17 17 N 1.46495 * 109.47664 * 179.97438 * 15 14 13 18 18 C 1.34783 * 119.99793 * 84.99907 * 17 15 14 19 19 O 1.21605 * 119.99685 * 0.02562 * 18 17 15 20 20 C 1.47420 * 119.99650 * 180.02562 * 18 17 15 21 21 C 1.36089 * 126.44482 * 179.97438 * 20 18 17 22 22 O 1.34254 * 106.94962 * 180.02562 * 21 20 18 23 23 C 1.34048 * 108.22694 * 0.02562 * 22 21 20 24 24 C 1.50704 * 125.37730 * 179.97438 * 23 22 21 25 25 C 1.55238 * 110.46892 * 54.82896 * 24 23 22 26 26 C 1.54894 * 102.58338 * 203.39217 * 25 24 23 27 27 C 1.54266 * 104.31305 * 37.93170 * 26 25 24 28 28 C 1.53869 * 106.60031 * 336.32486 * 27 26 25 29 29 N 1.29930 * 109.24172 * 0.22236 * 23 22 21 30 30 C 1.52993 * 109.46903 * 204.99724 * 10 9 7 31 31 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99559 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46877 * 179.97438 * 12 10 9 34 34 H 1.08993 * 109.47689 * 300.00315 * 12 10 9 35 35 H 1.08999 * 109.47178 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.46771 * 299.99341 * 13 12 10 37 37 H 1.08998 * 109.47595 * 180.02562 * 14 13 12 38 38 H 1.09001 * 109.47121 * 60.00107 * 14 13 12 39 39 H 0.96997 * 120.00424 * 265.00794 * 17 15 14 40 40 H 1.07999 * 126.52461 * 0.03873 * 21 20 18 41 41 H 1.09007 * 110.43017 * 177.48066 * 24 23 22 42 42 H 1.08996 * 110.89448 * 85.10781 * 25 24 23 43 43 H 1.08993 * 110.76342 * 321.62447 * 25 24 23 44 44 H 1.09002 * 110.48891 * 279.18596 * 26 25 24 45 45 H 1.08998 * 110.48494 * 156.67683 * 26 25 24 46 46 H 1.09001 * 110.03084 * 95.60669 * 27 26 25 47 47 H 1.08996 * 110.03108 * 216.98559 * 27 26 25 48 48 H 1.08999 * 110.04012 * 119.28327 * 28 27 26 49 49 H 1.09006 * 110.02998 * 240.67078 * 28 27 26 50 50 H 1.09001 * 109.47121 * 180.02562 * 30 10 9 51 51 H 1.08999 * 109.47093 * 60.00362 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5647 -3.2065 0.5890 12 6 4.2588 -2.9750 -1.4371 13 6 5.0275 -1.9423 -2.2640 14 6 6.4144 -1.7304 -1.6538 15 6 6.2678 -1.2261 -0.2167 16 1 5.7228 -0.2822 -0.2167 17 7 7.5958 -1.0238 0.3677 18 6 8.2517 0.1361 0.1648 19 8 7.7410 1.0146 -0.5031 20 6 9.5883 0.3395 0.7525 21 6 10.3637 1.4514 0.6321 22 8 11.4941 1.2164 1.3173 23 6 11.4156 -0.0127 1.8467 24 6 12.4777 -0.6683 2.6913 25 6 12.8408 0.2323 3.9024 26 6 14.2681 -0.2484 4.2645 27 6 14.9350 -0.5240 2.9010 28 6 13.7967 -0.7909 1.9008 29 7 10.2816 -0.5514 1.5122 30 6 5.4991 -2.2588 0.6101 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3620 0.0004 33 1 4.8042 -3.9187 -1.4371 34 1 3.2708 -3.1259 -1.8718 35 1 5.1323 -2.3017 -3.2876 36 1 4.4824 -0.9984 -2.2640 37 1 6.9618 -0.9943 -2.2426 38 1 6.9595 -2.6743 -1.6538 39 1 8.0031 -1.7244 0.9007 40 1 10.1167 2.3515 0.0889 41 1 12.1431 -1.6490 3.0296 42 1 12.1543 0.0636 4.7320 43 1 12.8488 1.2833 3.6137 44 1 14.2239 -1.1610 4.8590 45 1 14.8079 0.5306 4.8027 46 1 15.5130 0.3447 2.5858 47 1 15.5831 -1.3975 2.9722 48 1 13.8222 -0.0518 1.1000 49 1 13.8921 -1.7943 1.4856 50 1 6.0444 -3.2027 0.6097 51 1 5.3947 -1.8996 1.6339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981425319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:42 Heat of formation + Delta-G solvation = -49.625556 kcal Electronic energy + Delta-G solvation = -30635.619433 eV Core-core repulsion = 26534.620727 eV Total energy + Delta-G solvation = -4100.998706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.58354 -41.16145 -39.51058 -38.95026 -36.21421 -35.98537 -34.72392 -33.06216 -32.43293 -30.88187 -30.05567 -29.66376 -29.04793 -25.67994 -25.26338 -23.56688 -23.37533 -23.06121 -21.94474 -21.34843 -20.97017 -20.07643 -19.81590 -19.03157 -17.88020 -17.73255 -17.42805 -16.73982 -16.54270 -16.38733 -16.14494 -15.86702 -15.81216 -15.25321 -15.08244 -14.90187 -14.60600 -14.42282 -14.35830 -14.13793 -13.82292 -13.49899 -13.04166 -12.98355 -12.82692 -12.78540 -12.52530 -12.27575 -12.22728 -12.20965 -12.08916 -12.01696 -11.98865 -11.85470 -11.74304 -11.69453 -11.64139 -11.37574 -11.29174 -11.04497 -10.91008 -10.26970 -10.00236 -9.28090 -8.03092 -5.32705 -0.02702 0.84681 1.31658 1.34781 1.38904 1.45858 1.94973 2.12437 2.44024 2.68061 3.29220 3.52110 3.56975 3.58084 3.61070 3.77676 3.80887 3.86864 4.02729 4.08694 4.28462 4.37258 4.40335 4.41128 4.46931 4.47846 4.51021 4.53802 4.62329 4.65717 4.70853 4.75283 4.76942 4.91397 4.92267 4.96335 5.06730 5.08858 5.09348 5.22096 5.25608 5.28233 5.33429 5.34798 5.38173 5.49188 5.53845 5.58736 5.81227 6.21625 6.22945 6.52113 7.02489 7.08686 7.87285 8.03281 9.18794 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.002231 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.715468 B =12545.194978 C =13054.045169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.937 3.063 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.213 4.213 8 H 0.066 0.934 9 N -0.750 5.750 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.112 4.112 15 C 0.147 3.853 16 H 0.050 0.950 17 N -0.694 5.694 18 C 0.595 3.405 19 O -0.573 6.573 20 C -0.095 4.095 21 C 0.024 3.976 22 O -0.191 6.191 23 C 0.213 3.787 24 C 0.000 4.000 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.118 4.118 29 N -0.477 5.477 30 C -0.119 4.119 31 H 0.256 0.744 32 H 0.359 0.641 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.418 0.582 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.110 0.890 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.552 -4.276 6.266 37.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.251 4.251 3 Si 0.767 3.233 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.344 4.344 8 H 0.084 0.916 9 N -0.394 5.394 10 C 0.065 3.935 11 H 0.077 0.923 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.151 4.151 15 C 0.043 3.957 16 H 0.069 0.931 17 N -0.344 5.344 18 C 0.382 3.618 19 O -0.453 6.453 20 C -0.214 4.214 21 C -0.051 4.051 22 O -0.076 6.076 23 C 0.003 3.997 24 C -0.019 4.019 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.156 4.156 29 N -0.206 5.206 30 C -0.157 4.157 31 H 0.065 0.935 32 H 0.193 0.807 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.268 0.732 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.128 0.872 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 35.784 -4.378 5.991 36.545 hybrid contribution -0.291 1.952 -0.308 1.998 sum 35.492 -2.426 5.682 36.026 Atomic orbital electron populations 1.69838 1.06607 1.26189 1.60649 1.25269 0.95872 1.00203 1.03771 0.85676 0.78291 0.81553 0.77786 1.21153 1.22031 1.19274 1.19078 0.82632 0.93352 1.39378 0.91568 1.42964 1.02449 1.03957 1.90044 1.20458 0.90702 0.87295 0.95019 0.92349 1.22038 0.99476 0.98555 0.96654 1.21332 0.94771 0.99245 0.99279 1.21789 0.97455 1.01697 0.94110 1.20938 0.81899 0.98975 0.93936 0.93130 1.45793 1.18455 1.17112 1.53015 1.17087 0.83119 0.82374 0.79241 1.90832 1.68451 1.44141 1.41851 1.21628 0.98261 0.94592 1.06951 1.25733 0.82787 1.01165 0.95371 1.84397 1.37542 1.34066 1.51633 1.26831 0.95347 0.80366 0.97127 1.21021 0.89105 0.99209 0.92569 1.22706 0.98335 0.98870 0.95859 1.22357 0.93878 1.02174 0.97319 1.22136 0.97054 1.02585 0.94105 1.22255 0.91986 1.03092 0.98275 1.70724 1.04984 1.30802 1.14068 1.22004 0.95338 0.99789 0.98581 0.93536 0.80711 0.89370 0.93980 0.90827 0.94735 0.93204 0.89120 0.74492 0.73243 0.85342 0.90238 0.91324 0.90125 0.90393 0.91296 0.90150 0.92057 0.89876 0.87156 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.28 13.97 21.65 0.30 -63.97 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.94 49.18 27.74 68.60 1.90 51.09 16 4 H -0.28 -14.88 7.11 99.48 0.71 -14.18 16 5 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 6 H -0.27 -13.39 6.52 99.48 0.65 -12.74 16 7 C -0.21 -12.23 10.41 84.03 0.87 -11.35 16 8 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 9 N -0.75 -35.44 4.08 -322.96 -1.32 -36.76 16 10 C 0.17 6.26 3.10 44.99 0.14 6.40 16 11 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 12 C -0.13 -4.10 5.61 30.60 0.17 -3.92 16 13 C -0.11 -3.46 5.76 30.59 0.18 -3.28 16 14 C -0.11 -3.17 5.49 30.59 0.17 -3.00 16 15 C 0.15 4.54 2.28 44.99 0.10 4.64 16 16 H 0.05 2.01 5.94 -2.39 -0.01 2.00 16 17 N -0.69 -18.86 5.07 -445.80 -2.26 -21.12 16 18 C 0.60 18.24 7.78 86.66 0.67 18.92 16 19 O -0.57 -21.65 16.55 -4.05 -0.07 -21.71 16 20 C -0.10 -2.39 6.99 40.41 0.28 -2.11 16 21 C 0.02 0.48 11.95 67.32 0.80 1.28 16 22 O -0.19 -3.46 10.53 0.43 0.00 -3.45 16 23 C 0.21 3.77 6.77 88.39 0.60 4.37 16 24 C 0.00 0.00 3.40 -10.34 -0.04 -0.03 16 25 C -0.12 -1.03 6.35 32.01 0.20 -0.83 16 26 C -0.12 -0.63 6.82 31.67 0.22 -0.41 16 27 C -0.12 -0.66 6.80 31.32 0.21 -0.44 16 28 C -0.12 -0.97 6.36 31.32 0.20 -0.77 16 29 N -0.48 -10.63 11.06 -293.05 -3.24 -13.87 16 30 C -0.12 -3.37 5.07 30.59 0.16 -3.21 16 31 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 32 H 0.36 17.36 3.92 -92.71 -0.36 16.99 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.03 1.36 7.60 -2.39 -0.02 1.34 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.42 9.29 8.33 -92.71 -0.77 8.52 16 40 H 0.25 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.71 7.95 -2.39 -0.02 0.69 16 44 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.06 0.63 7.76 -2.39 -0.02 0.62 16 49 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.50 404.19 0.48 -76.01 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.25 Total: 30.71 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.41 Total: 3.07 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -6.52 Total: -135.72 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.90 Total: 51.09 kcal Total: -76.50 0.48 -76.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981425319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.389 kcal (2) G-P(sol) polarization free energy of solvation -76.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds