Wall clock time and date at job start Wed Apr 1 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00475 * 2 1 4 4 H 1.48499 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47061 * 300.00092 * 3 2 1 6 6 H 1.48506 * 109.46950 * 60.00087 * 3 2 1 7 7 C 1.38819 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 180.27759 * 7 2 1 9 9 N 1.36936 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64754 * 14.34596 * 9 7 2 11 11 C 1.55130 * 104.72431 * 155.81102 * 10 9 7 12 12 C 1.55158 * 101.48278 * 37.29236 * 11 10 9 13 13 C 1.47015 * 125.64691 * 194.64025 * 9 7 2 14 14 H 1.08997 * 109.88877 * 300.60290 * 13 9 7 15 15 C 1.52999 * 109.88384 * 61.61647 * 13 9 7 16 16 C 1.53044 * 109.46472 * 177.80745 * 15 13 9 17 17 C 1.53187 * 109.31327 * 178.61496 * 16 15 13 18 18 N 1.46927 * 108.78034 * 54.63364 * 17 16 15 19 19 C 1.34768 * 120.63182 * 126.41328 * 18 17 16 20 20 O 1.21284 * 119.99970 * 179.97438 * 19 18 17 21 21 C 1.50701 * 120.00189 * 359.97438 * 19 18 17 22 22 C 1.52994 * 109.47391 * 180.02562 * 21 19 18 23 23 C 1.50695 * 109.47429 * 180.02562 * 22 21 19 24 24 C 1.41383 * 126.80636 * 124.70833 * 23 22 21 25 25 C 1.35448 * 103.98745 * 179.88836 * 24 23 22 26 26 O 1.34038 * 106.44529 * 0.36854 * 25 24 23 27 27 N 1.20927 * 111.56849 * 359.74978 * 26 25 24 28 28 C 1.46931 * 118.73398 * 306.39412 * 18 17 16 29 29 C 1.53048 * 109.46091 * 57.73744 * 15 13 9 30 30 H 0.97000 * 119.99390 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36604 * 274.74173 * 10 9 7 32 32 H 1.09000 * 110.36806 * 37.05655 * 10 9 7 33 33 H 1.08996 * 111.19034 * 279.18889 * 11 10 9 34 34 H 1.08994 * 110.90382 * 155.27411 * 11 10 9 35 35 H 1.09003 * 110.71681 * 205.96510 * 12 11 10 36 36 H 1.08998 * 110.71706 * 82.69819 * 12 11 10 37 37 H 1.09001 * 109.45633 * 297.76862 * 15 13 9 38 38 H 1.08997 * 109.49287 * 298.56365 * 16 15 13 39 39 H 1.09000 * 109.49320 * 58.66043 * 16 15 13 40 40 H 1.09004 * 109.58323 * 294.84456 * 17 16 15 41 41 H 1.08996 * 109.70428 * 174.49497 * 17 16 15 42 42 H 1.08999 * 109.47258 * 300.00397 * 21 19 18 43 43 H 1.09002 * 109.47001 * 60.00093 * 21 19 18 44 44 H 1.09011 * 109.47223 * 299.99964 * 22 21 19 45 45 H 1.08998 * 109.47602 * 60.00123 * 22 21 19 46 46 H 1.08000 * 128.00572 * 0.02562 * 24 23 22 47 47 H 1.07995 * 126.77780 * 180.09651 * 25 24 23 48 48 H 1.08998 * 109.58552 * 293.81138 * 28 18 17 49 49 H 1.09003 * 109.70055 * 173.46573 * 28 18 17 50 50 H 1.08997 * 109.49582 * 301.34166 * 29 15 13 51 51 H 1.09000 * 109.49620 * 61.43338 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 0.0040 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1094 -2.5517 -0.2969 11 6 -0.2483 -4.0211 -0.7745 12 6 0.7641 -4.7443 0.1526 13 6 1.8981 -3.7082 0.3009 14 1 2.7022 -3.9324 -0.4000 15 6 2.4362 -3.7272 1.7330 16 6 2.9803 -5.1210 2.0549 17 6 3.5493 -5.1268 3.4771 18 7 2.5112 -4.6554 4.4039 19 6 2.1657 -5.3906 5.4793 20 8 1.3075 -4.9903 6.2371 21 6 2.8455 -6.7100 5.7402 22 6 2.2723 -7.3362 7.0130 23 6 2.9526 -8.6552 7.2742 24 6 3.6246 -9.0422 8.4564 25 6 4.0516 -10.3004 8.1933 26 8 3.6494 -10.5848 6.9467 27 7 3.0427 -9.6620 6.4540 28 6 1.8574 -3.3672 4.1361 29 6 1.3071 -3.3812 2.7066 30 1 -0.4849 0.8401 0.0004 31 1 -0.7037 -2.3846 0.6015 32 1 -0.4142 -1.8659 -1.0873 33 1 0.0379 -4.1239 -1.8211 34 1 -1.2609 -4.3894 -0.6100 35 1 1.1336 -5.6561 -0.3168 36 1 0.3126 -4.9631 1.1202 37 1 3.2367 -2.9938 1.8299 38 1 2.1746 -5.8516 1.9825 39 1 3.7684 -5.3763 1.3465 40 1 4.4129 -4.4635 3.5278 41 1 3.8495 -6.1388 3.7487 42 1 2.6746 -7.3797 4.8974 43 1 3.9163 -6.5486 5.8646 44 1 2.4430 -6.6665 7.8561 45 1 1.2016 -7.4976 6.8882 46 1 3.7633 -8.4683 9.3607 47 1 4.6100 -10.9454 8.8555 48 1 2.5829 -2.5605 4.2407 49 1 1.0396 -3.2166 4.8410 50 1 0.9045 -2.3982 2.4621 51 1 0.5172 -4.1282 2.6280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004489694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:27 Heat of formation + Delta-G solvation = 42.330819 kcal Electronic energy + Delta-G solvation = -31251.008366 eV Core-core repulsion = 27153.997188 eV Total energy + Delta-G solvation = -4097.011178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.24196 -40.22107 -38.47869 -36.42099 -35.54404 -33.05852 -32.55384 -32.10718 -31.55347 -30.60162 -29.33787 -27.72103 -25.84677 -24.60835 -23.68459 -23.46215 -22.80621 -21.40852 -20.89286 -20.04136 -19.19962 -18.34661 -18.02749 -17.81733 -17.03533 -16.55662 -15.84728 -15.72724 -15.23190 -15.04351 -14.65591 -14.18851 -14.03141 -13.88072 -13.79114 -13.62113 -13.32419 -13.04435 -12.71262 -12.51600 -12.40915 -12.12896 -12.01006 -11.89437 -11.81935 -11.47002 -11.27077 -11.18328 -10.95920 -10.87630 -10.79781 -10.38260 -10.35847 -10.17239 -10.05578 -9.97781 -9.85031 -9.71218 -9.64515 -9.51288 -9.41405 -8.57729 -8.45982 -6.74168 -5.72832 -3.07435 1.17963 1.90069 2.66194 2.94083 3.08641 3.38524 3.44830 3.46864 3.85221 4.16726 4.49172 4.53400 4.74767 4.81136 4.85571 4.93570 5.10064 5.11462 5.20616 5.26710 5.31736 5.42555 5.47236 5.48771 5.60434 5.61102 5.69281 5.74178 5.77357 5.80111 5.85062 5.91542 5.93997 6.02994 6.17876 6.25502 6.31903 6.39039 6.52313 6.58095 6.60848 6.66953 6.79256 7.02329 7.08352 7.19178 7.51210 7.58105 7.66122 7.83190 7.96043 8.21997 8.31205 9.22643 9.84153 10.54006 11.39158 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.002276 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.915126 B =12299.636276 C =12912.609597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.151 4.151 12 C -0.128 4.128 13 C 0.167 3.833 14 H 0.030 0.970 15 C -0.092 4.092 16 C -0.130 4.130 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.514 3.486 20 O -0.549 6.549 21 C -0.134 4.134 22 C -0.026 4.026 23 C 0.019 3.981 24 C -0.231 4.231 25 C -0.061 4.061 26 O 0.098 5.902 27 N -0.362 5.362 28 C 0.111 3.889 29 C -0.116 4.116 30 H 0.251 0.749 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.172 0.828 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.662 -19.023 13.755 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.091 0.909 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.190 4.190 12 C -0.165 4.165 13 C 0.059 3.941 14 H 0.048 0.952 15 C -0.113 4.113 16 C -0.169 4.169 17 C -0.016 4.016 18 N -0.338 5.338 19 C 0.302 3.698 20 O -0.427 6.427 21 C -0.175 4.175 22 C -0.064 4.064 23 C -0.140 4.140 24 C -0.253 4.253 25 C -0.143 4.143 26 O 0.032 5.968 27 N -0.066 5.066 28 C -0.011 4.011 29 C -0.154 4.154 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.189 0.811 47 H 0.232 0.768 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.722 -18.771 12.872 24.035 hybrid contribution 0.834 1.233 0.874 1.726 sum 8.556 -17.539 13.746 23.870 Atomic orbital electron populations 1.69946 1.04887 1.24913 1.56583 1.24865 0.95610 0.97599 1.02097 0.86147 0.78845 0.84182 0.77218 1.20564 1.21886 1.21788 1.18963 0.90225 0.82307 1.43622 0.90934 1.44500 1.05956 1.01191 1.80001 1.21445 0.85164 0.89893 0.98556 1.23050 0.97461 0.99931 0.98519 1.22654 0.97262 0.97108 0.99517 1.20923 0.93902 0.87057 0.92203 0.95186 1.21572 0.97843 0.94352 0.97493 1.22005 1.00842 0.99352 0.94699 1.21793 0.90161 0.99600 0.90039 1.48198 1.39134 1.21611 1.24838 1.20477 0.82827 0.85844 0.80679 1.90686 1.32890 1.72208 1.46938 1.21624 1.01323 0.95050 0.99468 1.19743 0.99809 0.88527 0.98348 1.23735 1.01295 0.97537 0.91449 1.22803 1.04377 0.96919 1.01194 1.26037 1.02285 0.98051 0.87925 1.84857 1.52238 1.34721 1.25012 1.73866 1.13060 0.97442 1.22235 1.21747 0.97642 0.83261 0.98453 1.21863 0.97748 1.04087 0.91725 0.93819 0.95760 0.91369 0.92571 0.92713 0.92838 0.91610 0.91377 0.91654 0.91130 0.91384 0.90386 0.88371 0.88936 0.88765 0.88966 0.81077 0.76761 0.91725 0.89580 0.88493 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.56 55.49 0.59 -25.61 16 2 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -5.87 9.85 -15.06 -0.15 -6.02 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 9 N -0.59 -14.15 2.27 -162.44 -0.37 -14.51 16 10 C 0.17 4.11 5.42 -2.41 -0.01 4.10 16 11 C -0.15 -2.85 7.10 -24.46 -0.17 -3.02 16 12 C -0.13 -2.19 5.21 -24.89 -0.13 -2.32 16 13 C 0.17 3.22 2.95 -66.96 -0.20 3.02 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.09 -1.55 1.91 -90.57 -0.17 -1.72 16 16 C -0.13 -1.69 5.09 -26.61 -0.14 -1.83 16 17 C 0.11 1.23 6.34 -3.71 -0.02 1.20 16 18 N -0.60 -8.38 2.97 -172.77 -0.51 -8.90 16 19 C 0.51 7.15 7.70 -10.99 -0.08 7.07 16 20 O -0.55 -9.48 15.40 5.55 0.09 -9.39 16 21 C -0.13 -1.39 4.02 -27.89 -0.11 -1.50 16 22 C -0.03 -0.26 5.10 -27.89 -0.14 -0.40 16 23 C 0.02 0.18 6.59 -82.10 -0.54 -0.36 16 24 C -0.23 -1.59 11.12 -39.38 -0.44 -2.03 16 25 C -0.06 -0.34 12.30 29.74 0.37 0.02 16 26 O 0.10 0.87 11.20 17.18 0.19 1.06 16 27 N -0.36 -3.93 12.06 33.42 0.40 -3.53 16 28 C 0.11 1.78 6.43 -3.71 -0.02 1.75 16 29 C -0.12 -2.07 4.93 -26.61 -0.13 -2.21 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.07 1.82 6.91 -51.93 -0.36 1.46 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.12 5.49 -51.93 -0.29 0.83 16 37 H 0.07 1.26 8.04 -51.93 -0.42 0.85 16 38 H 0.06 0.86 7.10 -51.93 -0.37 0.49 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 42 H 0.10 1.00 7.70 -51.93 -0.40 0.60 16 43 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 44 H 0.09 0.88 8.09 -51.92 -0.42 0.46 16 45 H 0.09 1.03 8.10 -51.93 -0.42 0.60 16 46 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.22 0.21 8.06 -52.49 -0.42 -0.21 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.09 1.48 7.01 -51.93 -0.36 1.12 16 50 H 0.10 2.13 7.52 -51.93 -0.39 1.74 16 51 H 0.06 1.03 6.14 -51.93 -0.32 0.71 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -31.88 396.15 -9.10 -40.98 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.23 Total: 1.73 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.20 Total: -4.46 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.11 Total: -52.56 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.28 Total: -8.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.88 -9.10 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004489694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.310 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds