Wall clock time and date at job start Wed Apr 1 2020 04:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00475 * 2 1 4 4 H 1.48499 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47061 * 300.00092 * 3 2 1 6 6 H 1.48506 * 109.46950 * 60.00087 * 3 2 1 7 7 C 1.38819 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 180.27759 * 7 2 1 9 9 N 1.36936 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64754 * 14.34596 * 9 7 2 11 11 C 1.55130 * 104.72431 * 155.81102 * 10 9 7 12 12 C 1.55158 * 101.48278 * 37.29236 * 11 10 9 13 13 C 1.47015 * 125.64691 * 194.64025 * 9 7 2 14 14 H 1.08997 * 109.88877 * 300.60290 * 13 9 7 15 15 C 1.52999 * 109.88384 * 61.61647 * 13 9 7 16 16 C 1.53044 * 109.46472 * 177.80745 * 15 13 9 17 17 C 1.53187 * 109.31327 * 178.61496 * 16 15 13 18 18 N 1.46927 * 108.78034 * 54.63364 * 17 16 15 19 19 C 1.34768 * 120.63182 * 126.41328 * 18 17 16 20 20 O 1.21284 * 119.99970 * 179.97438 * 19 18 17 21 21 C 1.50701 * 120.00189 * 359.97438 * 19 18 17 22 22 C 1.52994 * 109.47391 * 180.02562 * 21 19 18 23 23 C 1.50695 * 109.47429 * 180.02562 * 22 21 19 24 24 C 1.41383 * 126.80636 * 124.70833 * 23 22 21 25 25 C 1.35448 * 103.98745 * 179.88836 * 24 23 22 26 26 O 1.34038 * 106.44529 * 0.36854 * 25 24 23 27 27 N 1.20927 * 111.56849 * 359.74978 * 26 25 24 28 28 C 1.46931 * 118.73398 * 306.39412 * 18 17 16 29 29 C 1.53048 * 109.46091 * 57.73744 * 15 13 9 30 30 H 0.97000 * 119.99390 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36604 * 274.74173 * 10 9 7 32 32 H 1.09000 * 110.36806 * 37.05655 * 10 9 7 33 33 H 1.08996 * 111.19034 * 279.18889 * 11 10 9 34 34 H 1.08994 * 110.90382 * 155.27411 * 11 10 9 35 35 H 1.09003 * 110.71681 * 205.96510 * 12 11 10 36 36 H 1.08998 * 110.71706 * 82.69819 * 12 11 10 37 37 H 1.09001 * 109.45633 * 297.76862 * 15 13 9 38 38 H 1.08997 * 109.49287 * 298.56365 * 16 15 13 39 39 H 1.09000 * 109.49320 * 58.66043 * 16 15 13 40 40 H 1.09004 * 109.58323 * 294.84456 * 17 16 15 41 41 H 1.08996 * 109.70428 * 174.49497 * 17 16 15 42 42 H 1.08999 * 109.47258 * 300.00397 * 21 19 18 43 43 H 1.09002 * 109.47001 * 60.00093 * 21 19 18 44 44 H 1.09011 * 109.47223 * 299.99964 * 22 21 19 45 45 H 1.08998 * 109.47602 * 60.00123 * 22 21 19 46 46 H 1.08000 * 128.00572 * 0.02562 * 24 23 22 47 47 H 1.07995 * 126.77780 * 180.09651 * 25 24 23 48 48 H 1.08998 * 109.58552 * 293.81138 * 28 18 17 49 49 H 1.09003 * 109.70055 * 173.46573 * 28 18 17 50 50 H 1.08997 * 109.49582 * 301.34166 * 29 15 13 51 51 H 1.09000 * 109.49620 * 61.43338 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 0.0040 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1094 -2.5517 -0.2969 11 6 -0.2483 -4.0211 -0.7745 12 6 0.7641 -4.7443 0.1526 13 6 1.8981 -3.7082 0.3009 14 1 2.7022 -3.9324 -0.4000 15 6 2.4362 -3.7272 1.7330 16 6 2.9803 -5.1210 2.0549 17 6 3.5493 -5.1268 3.4771 18 7 2.5112 -4.6554 4.4039 19 6 2.1657 -5.3906 5.4793 20 8 1.3075 -4.9903 6.2371 21 6 2.8455 -6.7100 5.7402 22 6 2.2723 -7.3362 7.0130 23 6 2.9526 -8.6552 7.2742 24 6 3.6246 -9.0422 8.4564 25 6 4.0516 -10.3004 8.1933 26 8 3.6494 -10.5848 6.9467 27 7 3.0427 -9.6620 6.4540 28 6 1.8574 -3.3672 4.1361 29 6 1.3071 -3.3812 2.7066 30 1 -0.4849 0.8401 0.0004 31 1 -0.7037 -2.3846 0.6015 32 1 -0.4142 -1.8659 -1.0873 33 1 0.0379 -4.1239 -1.8211 34 1 -1.2609 -4.3894 -0.6100 35 1 1.1336 -5.6561 -0.3168 36 1 0.3126 -4.9631 1.1202 37 1 3.2367 -2.9938 1.8299 38 1 2.1746 -5.8516 1.9825 39 1 3.7684 -5.3763 1.3465 40 1 4.4129 -4.4635 3.5278 41 1 3.8495 -6.1388 3.7487 42 1 2.6746 -7.3797 4.8974 43 1 3.9163 -6.5486 5.8646 44 1 2.4430 -6.6665 7.8561 45 1 1.2016 -7.4976 6.8882 46 1 3.7633 -8.4683 9.3607 47 1 4.6100 -10.9454 8.8555 48 1 2.5829 -2.5605 4.2407 49 1 1.0396 -3.2166 4.8410 50 1 0.9045 -2.3982 2.4621 51 1 0.5172 -4.1282 2.6280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004489694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:26 Heat of formation + Delta-G solvation = 24.637061 kcal Electronic energy + Delta-G solvation = -31251.775625 eV Core-core repulsion = 27153.997188 eV Total energy + Delta-G solvation = -4097.778437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.83855 -41.40442 -39.92919 -37.78440 -36.28728 -34.73328 -33.81879 -33.11360 -32.38300 -31.66891 -31.18121 -29.17298 -26.91195 -26.41884 -25.01981 -24.05438 -23.97074 -22.64388 -21.88470 -21.58561 -20.47918 -19.51633 -18.85975 -18.54718 -18.44951 -17.90726 -17.02651 -16.81931 -16.70053 -16.37418 -15.79575 -15.71088 -15.32627 -15.14794 -14.99240 -14.46853 -14.34923 -14.16946 -13.88159 -13.85099 -13.56320 -13.46821 -13.35008 -13.17002 -13.00283 -12.81654 -12.79475 -12.66157 -12.56019 -12.17125 -11.98765 -11.93581 -11.84366 -11.75074 -11.49146 -11.32209 -11.20270 -10.97246 -10.92506 -10.75788 -10.62789 -10.49244 -9.66307 -8.71945 -7.81583 -5.16028 0.68543 1.32150 1.44655 1.45541 1.54828 1.57508 1.99337 2.51394 2.54192 3.19172 3.37279 3.49508 3.65551 3.69716 3.88015 3.93143 4.03271 4.07282 4.17213 4.22416 4.24678 4.27827 4.33047 4.36437 4.39683 4.46346 4.58475 4.64145 4.68361 4.74108 4.79103 4.81774 4.87483 4.90709 4.93544 5.04995 5.06986 5.09356 5.16529 5.21422 5.22486 5.26047 5.29628 5.53997 5.56906 5.65770 5.69348 5.72636 5.82012 6.30109 6.42805 7.11889 7.16073 7.41148 7.86010 8.54183 9.29947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.002276 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.915126 B =12299.636276 C =12912.609597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.157 3.843 14 H 0.035 0.965 15 C -0.083 4.083 16 C -0.122 4.122 17 C 0.106 3.894 18 N -0.605 5.605 19 C 0.511 3.489 20 O -0.589 6.589 21 C -0.121 4.121 22 C -0.022 4.022 23 C 0.003 3.997 24 C -0.243 4.243 25 C -0.042 4.042 26 O 0.087 5.913 27 N -0.395 5.395 28 C 0.119 3.881 29 C -0.102 4.102 30 H 0.243 0.757 31 H -0.009 1.009 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.193 0.807 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.045 0.955 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.628 -22.322 14.693 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.178 4.178 12 C -0.152 4.152 13 C 0.051 3.949 14 H 0.053 0.947 15 C -0.104 4.104 16 C -0.160 4.160 17 C -0.015 4.015 18 N -0.337 5.337 19 C 0.301 3.699 20 O -0.470 6.470 21 C -0.161 4.161 22 C -0.061 4.061 23 C -0.155 4.155 24 C -0.264 4.264 25 C -0.123 4.123 26 O 0.022 5.978 27 N -0.101 5.101 28 C -0.003 4.003 29 C -0.140 4.140 30 H 0.052 0.948 31 H 0.009 0.991 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.210 0.790 47 H 0.277 0.723 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.064 0.936 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.739 -22.121 13.800 28.197 hybrid contribution -0.079 2.204 0.618 2.290 sum 10.660 -19.917 14.418 26.799 Atomic orbital electron populations 1.70156 1.06253 1.24783 1.58604 1.25588 0.96348 1.00653 1.03180 0.85194 0.78504 0.80460 0.76360 1.18897 1.22405 1.22503 1.19259 0.90557 0.83476 1.41545 0.90566 1.44719 1.06045 1.02328 1.80196 1.21181 0.84963 0.92484 0.95898 1.22928 0.99376 0.96334 0.99190 1.22617 0.95670 0.97466 0.99459 1.21192 0.94764 0.85337 0.93571 0.94692 1.21412 0.96608 0.96856 0.95485 1.21943 1.01660 0.96062 0.96343 1.22010 0.89393 1.01773 0.88354 1.48251 1.39384 1.20588 1.25487 1.21153 0.82219 0.86669 0.79869 1.90672 1.34725 1.73286 1.48284 1.21583 1.02135 0.92515 0.99850 1.19631 0.98825 0.89199 0.98400 1.23799 1.01892 0.97094 0.92675 1.23130 1.04368 0.97779 1.01165 1.26878 1.00638 0.98047 0.86759 1.84807 1.52189 1.34339 1.26477 1.73862 1.14519 0.98149 1.23551 1.21423 0.97276 0.84965 0.96680 1.21619 0.98090 1.00983 0.93335 0.94767 0.99091 0.95342 0.91795 0.90794 0.89210 0.91432 0.93173 0.91139 0.88707 0.90297 0.86918 0.87618 0.86490 0.88489 0.90860 0.79011 0.72305 0.91840 0.91400 0.93589 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.56 21.65 0.23 -57.12 16 2 C -0.06 -3.66 5.47 84.86 0.46 -3.19 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.22 -11.84 9.85 84.04 0.83 -11.01 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.61 -29.80 2.27 -667.83 -1.51 -31.31 16 10 C 0.18 8.88 5.42 86.93 0.47 9.35 16 11 C -0.14 -5.15 7.10 32.06 0.23 -4.93 16 12 C -0.11 -3.67 5.21 31.78 0.17 -3.51 16 13 C 0.16 5.91 2.95 45.34 0.13 6.05 16 14 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.08 -2.73 1.91 -10.76 -0.02 -2.75 16 16 C -0.12 -2.74 5.09 30.67 0.16 -2.59 16 17 C 0.11 2.06 6.34 86.36 0.55 2.61 16 18 N -0.60 -15.87 2.97 -818.92 -2.43 -18.31 16 19 C 0.51 13.61 7.70 87.66 0.67 14.28 16 20 O -0.59 -20.49 15.40 -3.04 -0.05 -20.54 16 21 C -0.12 -2.21 4.02 29.85 0.12 -2.09 16 22 C -0.02 -0.42 5.10 29.84 0.15 -0.26 16 23 C 0.00 0.06 6.59 43.58 0.29 0.35 16 24 C -0.24 -2.64 11.12 22.40 0.25 -2.39 16 25 C -0.04 -0.32 12.30 67.17 0.83 0.50 16 26 O 0.09 1.34 11.20 71.64 0.80 2.14 16 27 N -0.40 -7.87 12.06 -49.56 -0.60 -8.46 16 28 C 0.12 3.92 6.43 86.36 0.56 4.48 16 29 C -0.10 -3.75 4.93 30.67 0.15 -3.59 16 30 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 31 H -0.01 -0.49 8.07 -2.38 -0.02 -0.51 16 32 H 0.03 1.60 6.91 -2.39 -0.02 1.58 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.16 5.49 -2.39 -0.01 2.15 16 37 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 38 H 0.07 1.57 7.10 -2.39 -0.02 1.56 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.11 1.49 5.93 -2.39 -0.01 1.48 16 42 H 0.11 1.83 7.70 -2.39 -0.02 1.82 16 43 H 0.12 1.60 7.94 -2.39 -0.02 1.58 16 44 H 0.10 1.73 8.09 -2.38 -0.02 1.71 16 45 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 46 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 47 H 0.26 -0.79 8.06 -2.91 -0.02 -0.81 16 48 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 2.47 7.01 -2.39 -0.02 2.45 16 50 H 0.05 2.16 7.52 -2.39 -0.02 2.14 16 51 H 0.05 1.94 6.14 -2.39 -0.01 1.93 16 Total: -1.00 -75.24 396.15 5.38 -69.86 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.92 Total: 14.39 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.99 Total: 1.32 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.32 Total: -115.20 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.76 Total: -18.40 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.24 5.38 -69.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004489694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds