Wall clock time and date at job start Wed Apr 1 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46910 * 240.00167 * 3 2 1 5 5 H 1.48495 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47013 * 120.00000 * 3 2 1 7 7 C 1.38816 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00334 * 197.36299 * 7 2 1 9 9 N 1.36937 * 119.99701 * 17.35241 * 7 2 1 10 10 C 1.46929 * 120.62929 * 27.68744 * 9 7 2 11 11 C 1.53197 * 108.77184 * 126.38584 * 10 9 7 12 12 C 1.53039 * 109.31436 * 54.63950 * 11 10 9 13 13 C 1.53044 * 109.53319 * 298.63280 * 12 11 10 14 14 H 1.08999 * 109.49579 * 301.37972 * 13 12 11 15 15 N 1.46504 * 109.49633 * 181.31763 * 13 12 11 16 16 C 1.34771 * 120.00161 * 155.06678 * 15 13 12 17 17 O 1.21610 * 119.99925 * 359.97438 * 16 15 13 18 18 C 1.47420 * 120.00053 * 180.02562 * 16 15 13 19 19 C 1.36095 * 126.44928 * 179.97438 * 18 16 15 20 20 O 1.34255 * 106.95002 * 179.79726 * 19 18 16 21 21 C 1.34048 * 108.22597 * 0.35429 * 20 19 18 22 22 C 1.50703 * 125.38000 * 179.89103 * 21 20 19 23 23 C 1.53002 * 109.46654 * 59.70224 * 22 21 20 24 24 C 1.52996 * 109.47159 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.47368 * 59.99510 * 24 23 22 26 26 C 1.53002 * 109.47380 * 300.00354 * 25 24 23 27 27 C 1.52998 * 109.46873 * 59.99767 * 26 25 24 28 28 N 1.29933 * 109.24384 * 359.63840 * 21 20 19 29 29 C 1.46937 * 120.60533 * 207.66192 * 9 7 2 30 30 H 0.96998 * 119.99594 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58543 * 6.60500 * 10 9 7 32 32 H 1.08997 * 109.70218 * 246.24459 * 10 9 7 33 33 H 1.08999 * 109.49867 * 294.68344 * 11 10 9 34 34 H 1.09000 * 109.51780 * 174.59971 * 11 10 9 35 35 H 1.08991 * 109.46413 * 178.61383 * 12 11 10 36 36 H 1.09005 * 109.46053 * 58.64790 * 12 11 10 37 37 H 0.97005 * 119.99780 * 335.05844 * 15 13 12 38 38 H 1.08003 * 126.52359 * 359.97438 * 19 18 16 39 39 H 1.09000 * 109.47050 * 179.69833 * 22 21 20 40 40 H 1.08995 * 109.47612 * 60.00083 * 23 22 21 41 41 H 1.09000 * 109.47072 * 299.99595 * 23 22 21 42 42 H 1.09001 * 109.47237 * 299.99803 * 24 23 22 43 43 H 1.08999 * 109.47478 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47229 * 60.00517 * 25 24 23 45 45 H 1.09004 * 109.47140 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47266 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.46649 * 299.99983 * 26 25 24 48 48 H 1.08998 * 109.47148 * 59.99909 * 27 26 25 49 49 H 1.09006 * 109.46987 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.55789 * 113.81402 * 29 9 7 51 51 H 1.09000 * 109.61391 * 353.38278 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3548 10 6 0.2278 -2.3339 -1.2758 11 6 0.5011 -3.3032 -2.4302 12 6 0.8190 -4.6887 -1.8633 13 6 2.0746 -4.6093 -0.9919 14 1 2.9085 -4.2393 -1.5883 15 7 2.3963 -5.9419 -0.4751 16 6 3.6629 -6.2415 -0.1257 17 8 4.5390 -5.4058 -0.2399 18 6 3.9867 -7.5826 0.3937 19 6 5.2136 -8.0244 0.7832 20 8 5.0612 -9.2945 1.1906 21 6 3.7709 -9.6287 1.0474 22 6 3.1741 -10.9700 1.3877 23 6 3.3953 -11.2645 2.8728 24 6 2.7899 -12.6264 3.2183 25 6 3.4637 -13.7123 2.3771 26 6 3.2425 -13.4179 0.8921 27 6 3.8479 -12.0559 0.5466 28 7 3.1152 -8.6119 0.5737 29 6 1.8201 -3.6546 0.1789 30 1 -0.4849 0.8401 -0.0004 31 1 0.0985 -1.3254 -1.6684 32 1 -0.6757 -2.6393 -0.7481 33 1 1.3497 -2.9450 -3.0129 34 1 -0.3794 -3.3652 -3.0698 35 1 0.9896 -5.3862 -2.6832 36 1 -0.0202 -5.0357 -1.2603 37 1 1.6975 -6.6085 -0.3843 38 1 6.1342 -7.4596 0.7699 39 1 2.1050 -10.9564 1.1753 40 1 2.9156 -10.4907 3.4721 41 1 4.4643 -11.2781 3.0852 42 1 1.7209 -12.6133 3.0059 43 1 2.9478 -12.8365 4.2762 44 1 4.5327 -13.7256 2.5896 45 1 3.0320 -14.6826 2.6230 46 1 3.7221 -14.1917 0.2928 47 1 2.1734 -13.4047 0.6797 48 1 4.9169 -12.0691 0.7591 49 1 3.6900 -11.8459 -0.5113 50 1 1.0479 -4.0690 0.8270 51 1 2.7411 -3.5177 0.7455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009684059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:08 Heat of formation + Delta-G solvation = -20.604323 kcal Electronic energy + Delta-G solvation = -30459.205597 eV Core-core repulsion = 26359.465347 eV Total energy + Delta-G solvation = -4099.740251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.63388 -39.51286 -38.91615 -37.29172 -35.03717 -34.24435 -32.70874 -32.30551 -31.27872 -30.43025 -29.49848 -28.55655 -25.24615 -24.39394 -24.04073 -23.10615 -22.14054 -21.95941 -21.17306 -20.53656 -19.87947 -19.28705 -18.02262 -16.92822 -16.73039 -16.53021 -16.09525 -15.57361 -14.95649 -14.75756 -14.73128 -14.67171 -14.61276 -14.11311 -13.87671 -13.54636 -13.39096 -13.09863 -13.05908 -13.00233 -12.71380 -12.36795 -12.34258 -11.79182 -11.75744 -11.67163 -11.44881 -11.06797 -11.04301 -11.00572 -10.86505 -10.80927 -10.75558 -10.66652 -10.24418 -10.20316 -10.10956 -9.87080 -9.61818 -9.58853 -9.17705 -8.77759 -8.35967 -6.63772 -5.74597 -3.16470 1.00157 1.88237 2.36282 3.22157 3.41922 3.43931 3.48162 3.51091 3.58867 4.18248 4.22711 4.38722 4.54692 4.62707 4.72867 4.73834 4.82174 4.93383 4.94262 4.99750 5.12516 5.24629 5.32739 5.39805 5.41874 5.48535 5.54707 5.57701 5.59701 5.63641 5.63855 5.65272 5.71334 5.77260 5.79072 5.90816 5.94808 6.11445 6.19408 6.29105 6.56749 6.64571 6.69585 6.73018 6.87400 7.01811 7.29114 7.39869 7.68495 7.79762 7.86431 8.38283 8.50291 9.25942 9.88275 10.44194 11.34131 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.001977 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.697762 B =14160.503828 C =14495.115399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.702 5.702 16 C 0.596 3.404 17 O -0.533 6.533 18 C -0.064 4.064 19 C 0.006 3.994 20 O -0.195 6.195 21 C 0.200 3.800 22 C 0.012 3.988 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.116 4.116 28 N -0.458 5.458 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.231 0.769 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.018 0.982 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -29.253 2.040 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.352 5.352 16 C 0.380 3.620 17 O -0.410 6.410 18 C -0.185 4.185 19 C -0.067 4.067 20 O -0.081 6.081 21 C -0.009 4.009 22 C -0.008 4.008 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.154 4.154 28 N -0.188 5.188 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.238 0.762 38 H 0.247 0.753 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.036 0.964 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.472 -28.452 1.842 29.032 hybrid contribution 0.805 0.684 0.183 1.072 sum 6.278 -27.768 2.025 28.541 Atomic orbital electron populations 1.70033 1.05224 1.25567 1.54044 1.25025 0.95306 0.98390 1.00971 0.86343 0.78889 0.83197 0.78224 1.20981 1.21668 1.20868 1.19184 0.92797 0.84705 1.41275 0.91588 1.43996 1.35601 1.00989 1.50419 1.20845 0.88578 0.98587 0.87868 1.22181 1.00458 0.95122 1.00125 1.21675 0.96708 0.98611 0.98281 1.21824 0.97992 0.80904 0.97284 0.89439 1.45957 1.08863 1.15986 1.64360 1.16739 0.83438 0.83964 0.77816 1.90856 1.47299 1.48114 1.54738 1.21959 0.90921 0.96292 1.09285 1.25315 1.01160 0.81946 0.98294 1.84353 1.31046 1.28042 1.64635 1.26248 0.77844 0.97851 0.98993 1.19844 1.00444 0.83669 0.96805 1.21644 1.02283 0.98099 0.93490 1.21524 1.00288 0.93747 0.99984 1.21591 1.01081 0.98545 0.94863 1.21523 1.01403 0.96164 0.96444 1.21640 1.00513 0.93716 0.99572 1.70774 1.32905 0.98935 1.16183 1.21188 0.98003 0.86802 0.92560 0.93631 0.89231 0.96271 0.92400 0.92665 0.93030 0.92136 0.76217 0.75297 0.86755 0.91031 0.91034 0.91431 0.91338 0.91771 0.91709 0.91381 0.91450 0.91041 0.91136 0.96381 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.30 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 9 N -0.59 -15.30 3.00 -172.31 -0.52 -15.81 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.95 5.36 -26.69 -0.14 -2.09 16 13 C 0.13 2.37 2.60 -67.81 -0.18 2.20 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 15 N -0.70 -11.53 5.08 -54.76 -0.28 -11.81 16 16 C 0.60 10.20 7.78 -12.52 -0.10 10.10 16 17 O -0.53 -10.77 16.55 5.27 0.09 -10.69 16 18 C -0.06 -0.91 6.99 -83.02 -0.58 -1.50 16 19 C 0.01 0.07 11.95 29.96 0.36 0.43 16 20 O -0.19 -2.08 10.73 6.52 0.07 -2.01 16 21 C 0.20 2.11 6.81 -13.08 -0.09 2.02 16 22 C 0.01 0.08 2.66 -91.77 -0.24 -0.16 16 23 C -0.12 -0.72 5.19 -26.73 -0.14 -0.86 16 24 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 25 C -0.12 -0.52 5.92 -26.73 -0.16 -0.68 16 26 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 27 C -0.12 -0.68 5.18 -26.73 -0.14 -0.82 16 28 N -0.46 -5.97 11.06 -7.65 -0.08 -6.06 16 29 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 5.83 8.33 -40.82 -0.34 5.49 16 38 H 0.23 2.05 8.06 -52.48 -0.42 1.62 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -32.89 405.32 -9.80 -42.69 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.62 Total: 2.00 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.16 Total: 4.28 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.26 Total: -59.69 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.16 Total: -12.70 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.89 -9.80 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009684059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.084 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds