Wall clock time and date at job start Wed Apr 1 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.45809 * 2 1 4 4 C 1.53103 * 109.46469 * 119.98760 * 2 1 3 5 5 C 1.53426 * 109.72999 * 50.14613 * 4 2 1 6 6 C 1.50593 * 108.31070 * 50.01919 * 5 4 2 7 7 O 1.33193 * 129.60553 * 163.18901 * 6 5 4 8 8 N 1.21426 * 111.57029 * 179.97438 * 7 6 5 9 9 C 1.31496 * 111.52769 * 0.43656 * 8 7 6 10 10 C 1.48329 * 127.15374 * 179.78263 * 9 8 7 11 11 O 1.21502 * 119.99842 * 179.68326 * 10 9 8 12 12 N 1.34773 * 120.00350 * 359.69593 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47269 * 185.65581 * 13 12 10 15 15 H 1.09000 * 109.99510 * 304.84298 * 14 13 12 16 16 C 1.54326 * 109.88078 * 65.93746 * 14 13 12 17 17 C 1.55444 * 102.96840 * 141.61473 * 16 14 13 18 18 C 1.54917 * 101.44837 * 324.51541 * 17 16 14 19 19 N 1.47017 * 109.88305 * 183.74839 * 14 13 12 20 20 C 1.36936 * 125.64982 * 61.62433 * 19 14 13 21 21 H 1.07999 * 120.00294 * 14.68119 * 20 19 14 22 22 C 1.38820 * 119.99597 * 194.68661 * 20 19 14 23 23 N 1.31615 * 120.00396 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99451 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47365 * 90.00312 * 24 22 20 26 26 H 1.48505 * 109.46755 * 209.99984 * 24 22 20 27 27 H 1.48493 * 109.47481 * 329.99524 * 24 22 20 28 28 C 1.35383 * 123.76429 * 343.34035 * 6 5 4 29 29 C 1.50063 * 124.93309 * 359.68347 * 28 6 5 30 30 H 1.09005 * 109.47295 * 300.01858 * 1 2 3 31 31 H 1.09004 * 109.46911 * 60.01725 * 1 2 3 32 32 H 1.09000 * 109.47565 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46689 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47257 * 299.97883 * 3 2 1 35 35 H 1.09000 * 109.46981 * 59.98375 * 3 2 1 36 36 H 1.09011 * 109.42660 * 290.06744 * 4 2 1 37 37 H 1.08997 * 109.38841 * 170.20548 * 4 2 1 38 38 H 1.09000 * 109.69997 * 290.30995 * 5 4 2 39 39 H 1.09007 * 109.69388 * 169.71639 * 5 4 2 40 40 H 0.97008 * 119.99940 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47158 * 65.65709 * 13 12 10 42 42 H 1.08996 * 109.47264 * 305.65474 * 13 12 10 43 43 H 1.09003 * 110.71643 * 259.97225 * 16 14 13 44 44 H 1.08998 * 110.72235 * 23.24671 * 16 14 13 45 45 H 1.08998 * 111.11882 * 206.46712 * 17 16 14 46 46 H 1.08996 * 111.01683 * 82.51954 * 17 16 14 47 47 H 1.09000 * 110.36417 * 278.10886 * 18 17 16 48 48 H 1.09007 * 110.36326 * 155.89781 * 18 17 16 49 49 H 0.97001 * 120.00134 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.70787 * 103.64442 * 29 28 6 51 51 H 1.09004 * 109.70867 * 224.26657 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0401 -0.7215 1.2503 5 6 1.3402 -2.0800 1.3862 6 6 1.4417 -2.7987 0.0668 7 8 1.2607 -4.0881 -0.2139 8 7 1.4254 -4.3151 -1.3953 9 6 1.7442 -3.2241 -2.0565 10 6 2.0250 -3.1062 -3.5082 11 8 2.3035 -2.0249 -3.9872 12 7 1.9710 -4.1984 -4.2960 13 6 2.2478 -4.0818 -5.7298 14 6 1.9834 -5.4259 -6.4113 15 1 2.5642 -6.2104 -5.9262 16 6 0.4795 -5.7646 -6.3379 17 6 0.2002 -6.4138 -7.7224 18 6 1.1353 -5.5899 -8.6426 19 7 2.3436 -5.3445 -7.8343 20 6 3.5941 -5.0834 -8.3274 21 1 4.4551 -5.1506 -7.6789 22 6 3.7551 -4.7323 -9.6608 23 7 2.7059 -4.6508 -10.4512 24 14 5.4609 -4.3756 -10.3331 25 1 6.0624 -5.6315 -10.8490 26 1 5.3614 -3.3853 -11.4354 27 1 6.3151 -3.8261 -9.2499 28 6 1.7567 -2.1886 -1.1000 29 6 2.0415 -0.7234 -1.2541 30 1 -0.3634 0.5141 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6765 1.9563 -0.8901 35 1 1.6759 1.9564 0.8898 36 1 1.8284 -0.1147 2.1308 37 1 3.1160 -0.8748 1.1659 38 1 0.2915 -1.9290 1.6426 39 1 1.8279 -2.6684 2.1635 40 1 1.7489 -5.0618 -3.9135 41 1 3.2902 -3.7988 -5.8768 42 1 1.5999 -3.3205 -6.1642 43 1 0.2827 -6.4731 -5.5333 44 1 -0.1139 -4.8594 -6.2099 45 1 -0.8430 -6.2877 -8.0120 46 1 0.4798 -7.4673 -7.7238 47 1 0.6634 -4.6462 -8.9158 48 1 1.3865 -6.1605 -9.5368 49 1 2.8183 -4.4052 -11.3828 50 1 3.1153 -0.5664 -1.3567 51 1 1.5275 -0.3396 -2.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028047006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:17 Heat of formation + Delta-G solvation = 31.312275 kcal Electronic energy + Delta-G solvation = -31128.175188 eV Core-core repulsion = 27030.686210 eV Total energy + Delta-G solvation = -4097.488978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.24377 -39.54395 -39.23930 -37.60938 -34.37880 -34.08030 -33.14756 -32.48171 -30.68893 -29.67415 -28.75260 -27.68206 -27.49620 -25.40898 -24.52697 -24.06525 -23.00451 -21.95392 -20.50286 -20.10838 -19.56616 -18.62110 -17.99552 -17.60509 -16.86271 -16.35095 -15.82570 -15.39875 -15.02647 -14.90100 -14.76155 -14.69951 -14.36286 -13.90031 -13.72097 -13.66447 -13.45032 -13.22650 -13.08152 -12.45719 -12.33181 -12.11705 -12.09947 -12.00194 -11.89637 -11.76777 -11.59111 -11.34663 -11.04334 -10.98337 -10.95970 -10.79263 -10.73137 -10.33650 -10.26047 -10.16412 -10.06862 -9.89217 -9.80830 -9.70678 -9.28390 -8.75348 -8.59061 -6.85695 -5.77972 -3.14860 1.02109 1.55685 2.67541 3.14036 3.27862 3.39430 3.45167 3.46969 3.91242 4.22087 4.24798 4.35088 4.48217 4.62942 4.66175 4.83168 4.88869 4.96374 5.22541 5.24844 5.31943 5.33633 5.38153 5.39907 5.40812 5.45318 5.50177 5.51773 5.59365 5.61236 5.66436 5.74911 5.80803 5.81193 5.97315 6.03489 6.04099 6.09402 6.11765 6.24618 6.44747 6.50472 6.56545 6.67197 6.76750 7.02687 7.50484 7.58087 7.61232 7.78161 7.91310 8.23493 8.29290 9.16107 9.76468 10.43964 11.33963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002412 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.642867 B =11605.348361 C =12528.146383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.034 4.034 6 C -0.042 4.042 7 O 0.125 5.875 8 N -0.338 5.338 9 C -0.011 4.011 10 C 0.590 3.410 11 O -0.522 6.522 12 N -0.705 5.705 13 C 0.108 3.892 14 C 0.152 3.848 15 H 0.039 0.961 16 C -0.127 4.127 17 C -0.148 4.148 18 C 0.172 3.828 19 N -0.588 5.588 20 C -0.235 4.235 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.915 5.915 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C -0.148 4.148 29 C -0.035 4.035 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.254 0.746 50 H 0.084 0.916 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 6.510 26.031 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.107 4.107 7 O 0.052 5.948 8 N -0.041 5.041 9 C -0.169 4.169 10 C 0.373 3.627 11 O -0.396 6.396 12 N -0.356 5.356 13 C -0.016 4.016 14 C 0.043 3.957 15 H 0.056 0.944 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.363 4.363 21 H 0.094 0.906 22 C -0.198 4.198 23 N -0.561 5.561 24 Si 0.741 3.259 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.152 4.152 29 C -0.072 4.072 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.044 0.956 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.728 6.073 24.955 26.314 hybrid contribution 0.910 0.471 -0.291 1.065 sum -4.818 6.544 24.663 25.968 Atomic orbital electron populations 1.21971 0.94173 1.02093 1.02061 1.20727 0.96150 0.95636 0.94337 1.21838 1.01227 0.94530 1.02170 1.21730 1.00557 0.93981 0.98288 1.20271 1.03166 0.94463 0.89335 1.24084 1.04106 0.83547 0.98941 1.84670 1.64148 1.25755 1.20219 1.74561 1.16653 1.22892 0.90012 1.23202 1.06022 0.90302 0.97391 1.16902 0.78311 0.85014 0.82523 1.90799 1.48161 1.26893 1.73775 1.46049 1.69192 1.10093 1.10231 1.22375 1.01980 1.01189 0.76084 1.21133 0.93626 0.92967 0.87961 0.94379 1.22660 0.96108 0.99949 0.97760 1.23056 0.99646 0.99736 0.96253 1.21462 0.84647 0.96126 0.93041 1.44486 1.06084 1.82618 0.98004 1.18989 0.83071 1.40157 0.94114 0.90639 1.24923 0.97480 1.00470 0.96936 1.69937 1.27562 1.53051 1.05533 0.86139 0.83403 0.77776 0.78583 1.21503 1.21560 1.20503 1.20625 1.05620 0.98353 0.90648 1.20105 1.02141 0.86703 0.98291 0.92366 0.92293 0.92459 0.92340 0.92113 0.92364 0.89996 0.90947 0.88584 0.88956 0.76408 0.91063 0.91177 0.92339 0.91871 0.92277 0.92253 0.95567 0.90902 0.93568 0.89778 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.72 37.16 0.29 -0.74 16 2 C -0.07 -0.49 0.77 -154.17 -0.12 -0.61 16 3 C -0.14 -0.88 8.44 37.16 0.31 -0.57 16 4 C -0.11 -0.59 4.83 -26.46 -0.13 -0.72 16 5 C -0.03 -0.20 5.66 -27.71 -0.16 -0.35 16 6 C -0.04 -0.42 6.64 -35.38 -0.24 -0.65 16 7 O 0.12 1.45 11.18 19.18 0.21 1.66 16 8 N -0.34 -4.67 11.89 33.29 0.40 -4.27 16 9 C -0.01 -0.16 7.19 -82.83 -0.60 -0.75 16 10 C 0.59 10.27 7.85 -12.11 -0.10 10.18 16 11 O -0.52 -10.50 16.08 5.36 0.09 -10.41 16 12 N -0.70 -11.87 5.34 -61.09 -0.33 -12.20 16 13 C 0.11 2.16 5.09 -4.04 -0.02 2.14 16 14 C 0.15 3.09 3.20 -66.95 -0.21 2.87 16 15 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.13 -2.22 6.18 -24.74 -0.15 -2.37 16 17 C -0.15 -2.78 7.11 -24.42 -0.17 -2.96 16 18 C 0.17 4.14 5.41 -2.52 -0.01 4.13 16 19 N -0.59 -14.76 3.13 -162.56 -0.51 -15.27 16 20 C -0.24 -6.48 9.73 -15.06 -0.15 -6.63 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 22 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 23 N -0.91 -26.74 10.57 55.49 0.59 -26.15 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.15 -1.79 5.60 -104.91 -0.59 -2.38 16 29 C -0.04 -0.37 4.41 -27.91 -0.12 -0.50 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 5.66 -51.93 -0.29 0.15 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.30 8.11 -51.92 -0.42 -0.12 16 37 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.10 0.43 6.99 -51.93 -0.36 0.06 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.40 6.00 8.16 -40.82 -0.33 5.67 16 41 H 0.07 1.58 7.88 -51.93 -0.41 1.17 16 42 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 48 H 0.07 1.94 6.93 -51.93 -0.36 1.59 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 51 H 0.09 1.13 7.81 -51.93 -0.41 0.72 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -31.78 399.60 -9.25 -41.04 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.44 Total: 2.41 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.26 Total: -0.01 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.15 Total: -57.89 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.30 Total: -8.75 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.78 -9.25 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.348 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds