Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.45809 * 2 1 4 4 C 1.53103 * 109.46469 * 119.98760 * 2 1 3 5 5 C 1.53426 * 109.72999 * 50.14613 * 4 2 1 6 6 C 1.50593 * 108.31070 * 50.01919 * 5 4 2 7 7 O 1.33193 * 129.60553 * 163.18901 * 6 5 4 8 8 N 1.21426 * 111.57029 * 179.97438 * 7 6 5 9 9 C 1.31496 * 111.52769 * 0.43656 * 8 7 6 10 10 C 1.48329 * 127.15374 * 179.78263 * 9 8 7 11 11 O 1.21502 * 119.99842 * 179.68326 * 10 9 8 12 12 N 1.34773 * 120.00350 * 359.69593 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47269 * 185.65581 * 13 12 10 15 15 H 1.09000 * 109.99510 * 304.84298 * 14 13 12 16 16 C 1.54326 * 109.88078 * 65.93746 * 14 13 12 17 17 C 1.55444 * 102.96840 * 141.61473 * 16 14 13 18 18 C 1.54917 * 101.44837 * 324.51541 * 17 16 14 19 19 N 1.47017 * 109.88305 * 183.74839 * 14 13 12 20 20 C 1.36936 * 125.64982 * 61.62433 * 19 14 13 21 21 H 1.07999 * 120.00294 * 14.68119 * 20 19 14 22 22 C 1.38820 * 119.99597 * 194.68661 * 20 19 14 23 23 N 1.31615 * 120.00396 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99451 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47365 * 90.00312 * 24 22 20 26 26 H 1.48505 * 109.46755 * 209.99984 * 24 22 20 27 27 H 1.48493 * 109.47481 * 329.99524 * 24 22 20 28 28 C 1.35383 * 123.76429 * 343.34035 * 6 5 4 29 29 C 1.50063 * 124.93309 * 359.68347 * 28 6 5 30 30 H 1.09005 * 109.47295 * 300.01858 * 1 2 3 31 31 H 1.09004 * 109.46911 * 60.01725 * 1 2 3 32 32 H 1.09000 * 109.47565 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46689 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47257 * 299.97883 * 3 2 1 35 35 H 1.09000 * 109.46981 * 59.98375 * 3 2 1 36 36 H 1.09011 * 109.42660 * 290.06744 * 4 2 1 37 37 H 1.08997 * 109.38841 * 170.20548 * 4 2 1 38 38 H 1.09000 * 109.69997 * 290.30995 * 5 4 2 39 39 H 1.09007 * 109.69388 * 169.71639 * 5 4 2 40 40 H 0.97008 * 119.99940 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47158 * 65.65709 * 13 12 10 42 42 H 1.08996 * 109.47264 * 305.65474 * 13 12 10 43 43 H 1.09003 * 110.71643 * 259.97225 * 16 14 13 44 44 H 1.08998 * 110.72235 * 23.24671 * 16 14 13 45 45 H 1.08998 * 111.11882 * 206.46712 * 17 16 14 46 46 H 1.08996 * 111.01683 * 82.51954 * 17 16 14 47 47 H 1.09000 * 110.36417 * 278.10886 * 18 17 16 48 48 H 1.09007 * 110.36326 * 155.89781 * 18 17 16 49 49 H 0.97001 * 120.00134 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.70787 * 103.64442 * 29 28 6 51 51 H 1.09004 * 109.70867 * 224.26657 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0401 -0.7215 1.2503 5 6 1.3402 -2.0800 1.3862 6 6 1.4417 -2.7987 0.0668 7 8 1.2607 -4.0881 -0.2139 8 7 1.4254 -4.3151 -1.3953 9 6 1.7442 -3.2241 -2.0565 10 6 2.0250 -3.1062 -3.5082 11 8 2.3035 -2.0249 -3.9872 12 7 1.9710 -4.1984 -4.2960 13 6 2.2478 -4.0818 -5.7298 14 6 1.9834 -5.4259 -6.4113 15 1 2.5642 -6.2104 -5.9262 16 6 0.4795 -5.7646 -6.3379 17 6 0.2002 -6.4138 -7.7224 18 6 1.1353 -5.5899 -8.6426 19 7 2.3436 -5.3445 -7.8343 20 6 3.5941 -5.0834 -8.3274 21 1 4.4551 -5.1506 -7.6789 22 6 3.7551 -4.7323 -9.6608 23 7 2.7059 -4.6508 -10.4512 24 14 5.4609 -4.3756 -10.3331 25 1 6.0624 -5.6315 -10.8490 26 1 5.3614 -3.3853 -11.4354 27 1 6.3151 -3.8261 -9.2499 28 6 1.7567 -2.1886 -1.1000 29 6 2.0415 -0.7234 -1.2541 30 1 -0.3634 0.5141 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6765 1.9563 -0.8901 35 1 1.6759 1.9564 0.8898 36 1 1.8284 -0.1147 2.1308 37 1 3.1160 -0.8748 1.1659 38 1 0.2915 -1.9290 1.6426 39 1 1.8279 -2.6684 2.1635 40 1 1.7489 -5.0618 -3.9135 41 1 3.2902 -3.7988 -5.8768 42 1 1.5999 -3.3205 -6.1642 43 1 0.2827 -6.4731 -5.5333 44 1 -0.1139 -4.8594 -6.2099 45 1 -0.8430 -6.2877 -8.0120 46 1 0.4798 -7.4673 -7.7238 47 1 0.6634 -4.6462 -8.9158 48 1 1.3865 -6.1605 -9.5368 49 1 2.8183 -4.4052 -11.3828 50 1 3.1153 -0.5664 -1.3567 51 1 1.5275 -0.3396 -2.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028047006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = 12.067683 kcal Electronic energy + Delta-G solvation = -31129.009696 eV Core-core repulsion = 27030.686210 eV Total energy + Delta-G solvation = -4098.323486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.24143 -40.94589 -39.96206 -39.31548 -35.97547 -35.11409 -34.45142 -33.83510 -31.62794 -31.32918 -30.45803 -28.38680 -28.12846 -26.98263 -26.30781 -24.86955 -24.25994 -22.85311 -22.11278 -21.56518 -21.17416 -19.57698 -19.02182 -18.72525 -18.40862 -17.65043 -17.39937 -16.70889 -16.49180 -16.11335 -15.85300 -15.74376 -15.54083 -15.30036 -14.98001 -14.77364 -14.35546 -14.25104 -14.03298 -14.02124 -13.71425 -13.50234 -13.10246 -13.05190 -12.94043 -12.90959 -12.69776 -12.67346 -12.58295 -12.28218 -12.06541 -11.96618 -11.82743 -11.70043 -11.61886 -11.55865 -11.51360 -11.48423 -11.26229 -11.19785 -10.71781 -10.29523 -10.12589 -8.91820 -7.92461 -5.30896 -0.03896 0.60244 1.41752 1.43957 1.52441 1.70969 1.94501 1.94835 2.45237 2.79722 3.26668 3.41796 3.55145 3.68175 3.80744 3.84826 3.89096 3.90818 3.98135 4.11103 4.16970 4.20784 4.35178 4.40242 4.45282 4.47666 4.63085 4.63591 4.72355 4.78558 4.84373 4.89552 4.90928 4.92027 5.01861 5.04810 5.05942 5.08334 5.13760 5.15307 5.19644 5.23548 5.38506 5.40439 5.46226 5.46797 5.54275 5.61308 5.73226 6.17319 6.23382 6.84552 6.97141 7.04564 7.70517 8.36931 9.18450 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002412 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.642867 B =11605.348361 C =12528.146383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.105 4.105 5 C -0.034 4.034 6 C -0.017 4.017 7 O 0.139 5.861 8 N -0.348 5.348 9 C -0.038 4.038 10 C 0.589 3.411 11 O -0.557 6.557 12 N -0.694 5.694 13 C 0.129 3.871 14 C 0.149 3.851 15 H 0.050 0.950 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.609 5.609 20 C -0.244 4.244 21 H 0.076 0.924 22 C -0.058 4.058 23 N -0.944 5.944 24 Si 0.974 3.026 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.273 1.273 28 C -0.168 4.168 29 C -0.035 4.035 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.414 0.586 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.071 0.929 47 H -0.007 1.007 48 H 0.039 0.961 49 H 0.249 0.751 50 H 0.073 0.927 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 6.035 30.354 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.072 4.072 6 C -0.081 4.081 7 O 0.063 5.937 8 N -0.049 5.049 9 C -0.194 4.194 10 C 0.374 3.626 11 O -0.435 6.435 12 N -0.346 5.346 13 C 0.004 3.996 14 C 0.041 3.959 15 H 0.067 0.933 16 C -0.152 4.152 17 C -0.171 4.171 18 C 0.049 3.951 19 N -0.333 5.333 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.802 3.198 25 H -0.208 1.208 26 H -0.220 1.220 27 H -0.198 1.198 28 C -0.174 4.174 29 C -0.072 4.072 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.012 0.988 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.405 5.562 29.304 30.507 hybrid contribution 1.104 0.636 -1.526 1.988 sum -5.301 6.198 27.777 28.950 Atomic orbital electron populations 1.21966 0.93856 1.01789 1.02523 1.20724 0.96311 0.95887 0.93475 1.21836 1.01206 0.94021 1.02590 1.21775 1.00277 0.94021 0.98179 1.20642 1.05034 0.94166 0.87342 1.24842 1.01024 0.82317 0.99939 1.84644 1.63149 1.26746 1.19149 1.74537 1.16955 1.22627 0.90800 1.22893 1.08436 0.92018 0.96089 1.17259 0.77230 0.84313 0.83803 1.90775 1.49646 1.28188 1.74861 1.45786 1.69163 1.10809 1.08817 1.21850 0.99522 1.00323 0.77953 1.21305 0.96119 0.92915 0.85547 0.93257 1.22638 0.93410 1.00853 0.98316 1.22927 0.99600 0.99328 0.95201 1.21280 0.85449 0.95033 0.93338 1.44734 1.05664 1.82637 1.00268 1.19294 0.84413 1.39242 0.94312 0.90625 1.25707 1.00948 1.01110 0.97413 1.70136 1.29320 1.54362 1.05376 0.85160 0.79459 0.77516 0.77702 1.20750 1.21977 1.19816 1.20841 1.06852 0.98653 0.91006 1.20111 1.01234 0.86567 0.99330 0.89780 0.93991 0.93082 0.92421 0.93487 0.90144 0.86760 0.91259 0.86224 0.86075 0.74918 0.94002 0.93631 0.88309 0.91836 0.89732 0.90998 0.98846 0.94271 0.94177 0.90900 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.72 71.98 0.56 -1.17 16 2 C -0.06 -0.80 0.77 -51.96 -0.04 -0.84 16 3 C -0.14 -1.53 8.44 71.98 0.61 -0.92 16 4 C -0.11 -0.74 4.83 30.77 0.15 -0.59 16 5 C -0.03 -0.24 5.66 29.96 0.17 -0.07 16 6 C -0.02 -0.28 6.64 24.99 0.17 -0.12 16 7 O 0.14 2.89 11.18 78.67 0.88 3.77 16 8 N -0.35 -9.19 11.89 -48.95 -0.58 -9.77 16 9 C -0.04 -1.13 7.19 42.55 0.31 -0.82 16 10 C 0.59 21.30 7.85 86.93 0.68 21.98 16 11 O -0.56 -23.89 16.08 -3.72 -0.06 -23.95 16 12 N -0.69 -23.74 5.34 -465.50 -2.49 -26.22 16 13 C 0.13 5.36 5.09 86.38 0.44 5.80 16 14 C 0.15 6.05 3.20 45.34 0.15 6.20 16 15 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.11 -3.79 6.18 31.89 0.20 -3.59 16 17 C -0.13 -4.77 7.11 32.09 0.23 -4.54 16 18 C 0.17 8.65 5.41 86.86 0.47 9.12 16 19 N -0.61 -31.42 3.13 -668.22 -2.09 -33.51 16 20 C -0.24 -13.86 9.73 84.04 0.82 -13.04 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.06 -3.35 5.47 84.86 0.46 -2.89 16 23 N -0.94 -57.61 10.57 21.65 0.23 -57.38 16 24 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 C -0.17 -4.00 5.60 -20.05 -0.11 -4.11 16 29 C -0.03 -0.76 4.41 29.83 0.13 -0.63 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.67 5.66 -2.39 -0.01 0.66 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.18 8.11 -2.38 -0.02 0.16 16 37 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 38 H 0.12 0.41 6.99 -2.39 -0.02 0.39 16 39 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.41 12.04 8.16 -92.70 -0.76 11.28 16 41 H 0.04 1.96 7.88 -2.39 -0.02 1.94 16 42 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 43 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.06 2.12 7.79 -2.39 -0.02 2.10 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H -0.01 -0.36 8.06 -2.39 -0.02 -0.38 16 48 H 0.04 2.18 6.93 -2.38 -0.02 2.16 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 51 H 0.06 1.67 7.81 -2.39 -0.02 1.65 16 Total: -1.00 -74.62 399.60 3.47 -71.14 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.18 Total: 17.14 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.38 Total: 9.76 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -4.93 Total: -126.89 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.82 Total: -20.18 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -74.62 3.47 -71.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.211 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds