Wall clock time and date at job start Wed Apr 1 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47137 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47015 * 299.99720 * 3 2 1 6 6 H 1.48500 * 109.47438 * 59.99903 * 3 2 1 7 7 C 1.38816 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00140 * 158.59908 * 7 2 1 9 9 N 1.36940 * 119.99775 * 338.60512 * 7 2 1 10 10 C 1.43440 * 120.53948 * 156.25020 * 9 7 2 11 11 C 1.54893 * 116.08342 * 271.59563 * 10 9 7 12 12 C 1.54845 * 110.13962 * 318.63614 * 11 10 9 13 13 C 1.50310 * 110.69404 * 321.13305 * 12 11 10 14 14 C 1.52528 * 105.32765 * 97.83700 * 13 12 11 15 15 H 1.08996 * 108.52311 * 31.57586 * 14 13 12 16 16 N 1.46502 * 108.51932 * 149.24460 * 14 13 12 17 17 C 1.34777 * 120.00020 * 207.28500 * 16 14 13 18 18 O 1.21606 * 119.99827 * 0.02562 * 17 16 14 19 19 C 1.47392 * 119.99963 * 179.97438 * 17 16 14 20 20 C 1.37368 * 128.56895 * 0.14005 * 19 17 16 21 21 O 1.33491 * 106.34360 * 180.25839 * 20 19 17 22 22 N 1.20661 * 113.15596 * 359.73516 * 21 20 19 23 23 C 1.30015 * 112.30187 * 0.02562 * 22 21 20 24 24 C 1.50694 * 127.33353 * 179.97438 * 23 22 21 25 25 C 1.54885 * 110.75799 * 300.02465 * 24 23 22 26 26 C 1.54269 * 104.31233 * 156.32338 * 25 24 23 27 27 C 1.53874 * 106.60151 * 336.32201 * 26 25 24 28 28 C 1.54265 * 106.59455 * 0.02562 * 27 26 25 29 29 C 1.46230 * 114.16122 * 270.40708 * 14 13 12 30 30 H 0.97000 * 119.99698 * 0.02562 * 1 2 3 31 31 H 1.09003 * 108.15433 * 33.30896 * 10 9 7 32 32 H 1.08997 * 108.15910 * 149.87209 * 10 9 7 33 33 H 1.08997 * 109.36224 * 78.83874 * 11 10 9 34 34 H 1.08994 * 109.36351 * 198.57283 * 11 10 9 35 35 H 1.09010 * 109.20765 * 81.47880 * 12 11 10 36 36 H 1.09005 * 109.21092 * 200.78773 * 12 11 10 37 37 H 1.08994 * 110.38243 * 338.84214 * 13 12 11 38 38 H 1.08999 * 110.19631 * 216.73651 * 13 12 11 39 39 H 0.97000 * 119.99929 * 27.28261 * 16 14 13 40 40 H 1.08003 * 126.82443 * 359.97438 * 20 19 17 41 41 H 1.09003 * 110.81938 * 176.68559 * 24 23 22 42 42 H 1.08993 * 110.48992 * 37.58095 * 25 24 23 43 43 H 1.08999 * 110.48913 * 275.06627 * 25 24 23 44 44 H 1.09005 * 110.03235 * 95.60857 * 26 25 24 45 45 H 1.08998 * 110.03084 * 216.98790 * 26 25 24 46 46 H 1.08998 * 110.03141 * 119.28331 * 27 26 25 47 47 H 1.08990 * 110.03399 * 240.71756 * 27 26 25 48 48 H 1.09005 * 110.48912 * 142.28568 * 28 27 26 49 49 H 1.08999 * 110.49010 * 264.79793 * 28 27 26 50 50 H 1.08998 * 109.85023 * 177.99353 * 29 14 13 51 51 H 1.09004 * 109.84880 * 298.97820 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0344 -1.2346 -0.3407 9 7 1.3963 -2.3470 0.4337 10 6 1.8579 -3.6323 -0.0050 11 6 1.2341 -4.1684 -1.3175 12 6 -0.2855 -3.8727 -1.3453 13 6 -0.8892 -4.0657 0.0177 14 6 -0.9649 -2.6693 0.6266 15 1 -1.1220 -1.9494 -0.1765 16 7 -2.1182 -2.6169 1.5286 17 6 -2.7394 -1.4436 1.7607 18 8 -2.3430 -0.4285 1.2209 19 6 -3.9000 -1.3910 2.6677 20 6 -4.4894 -2.4175 3.3648 21 8 -5.5059 -1.8774 4.0409 22 7 -5.6158 -0.6891 3.8632 23 6 -4.7117 -0.2258 3.0518 24 6 -4.5363 1.2001 2.5970 25 6 -5.8035 1.7014 1.8610 26 6 -5.7465 3.2363 2.0057 27 6 -4.8847 3.5292 3.2463 28 6 -4.4475 2.1621 3.8119 29 6 0.2285 -2.2773 1.3751 30 1 -0.4850 0.8401 -0.0004 31 1 2.9382 -3.5774 -0.1399 32 1 1.6563 -4.3540 0.7866 33 1 1.7121 -3.6840 -2.1690 34 1 1.3917 -5.2452 -1.3791 35 1 -0.4448 -2.8433 -1.6667 36 1 -0.7694 -4.5471 -2.0518 37 1 -0.2540 -4.7089 0.6266 38 1 -1.8878 -4.4937 -0.0702 39 1 -2.4346 -3.4267 1.9588 40 1 -4.1924 -3.4559 3.3625 41 1 -3.6561 1.2986 1.9615 42 1 -6.7017 1.3067 2.3358 43 1 -5.7721 1.4160 0.8095 44 1 -5.2890 3.6781 1.1205 45 1 -6.7510 3.6357 2.1453 46 1 -4.0089 4.1130 2.9632 47 1 -5.4708 4.0706 3.9888 48 1 -3.4244 2.2128 4.1844 49 1 -5.1252 1.8423 4.6034 50 1 0.1139 -1.2594 1.7477 51 1 0.3840 -2.9620 2.2089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034241983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:57 Heat of formation + Delta-G solvation = 46.300051 kcal Electronic energy + Delta-G solvation = -32437.776492 eV Core-core repulsion = 28340.937433 eV Total energy + Delta-G solvation = -4096.839059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.78779 -39.33639 -38.16436 -37.34993 -34.08959 -33.57923 -33.15725 -32.01066 -30.70579 -29.63437 -28.67108 -28.58850 -26.13738 -24.61201 -24.13586 -22.67713 -22.51724 -20.41509 -20.24715 -20.05625 -19.52885 -18.84166 -17.93335 -17.52896 -16.64166 -16.34274 -15.70993 -15.45290 -14.98222 -14.87597 -14.36660 -14.08495 -13.94663 -13.65618 -13.44990 -13.35018 -13.08067 -13.00515 -12.47355 -12.26113 -11.86910 -11.71524 -11.70517 -11.47068 -11.32718 -11.25307 -11.11944 -11.09032 -10.72357 -10.65167 -10.51698 -10.41008 -10.22402 -10.13410 -9.85203 -9.77843 -9.66641 -9.55570 -9.53336 -9.39017 -9.11983 -8.48901 -8.16292 -6.62947 -5.61201 -3.04430 1.26373 1.93492 3.07151 3.46074 3.55335 3.56241 3.71511 3.85515 4.13509 4.37223 4.62483 4.68487 4.71025 4.91529 5.04764 5.25777 5.40438 5.45015 5.45217 5.54239 5.55604 5.56721 5.63067 5.66186 5.68716 5.73176 5.82662 5.84106 5.93919 5.96855 6.09869 6.17477 6.20252 6.20392 6.30019 6.36396 6.38856 6.52092 6.54126 6.58727 6.85131 6.94091 6.99255 7.06347 7.18098 7.22865 7.56858 7.63893 7.94660 8.21806 8.32073 8.53975 8.94081 9.31190 9.96540 10.48694 11.43812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.003996 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.653703 B = 7005.295956 C = 8978.000959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.012 3.988 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.277 4.277 8 H 0.066 0.934 9 N -0.580 5.580 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.131 3.869 15 H 0.131 0.869 16 N -0.726 5.726 17 C 0.568 3.432 18 O -0.469 6.469 19 C -0.233 4.233 20 C -0.029 4.029 21 O 0.090 5.910 22 N -0.362 5.362 23 C 0.079 3.921 24 C -0.023 4.023 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.114 4.114 29 C 0.158 3.842 30 H 0.262 0.738 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.379 0.621 40 H 0.221 0.779 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.381 -4.806 5.804 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.190 4.190 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.406 4.406 8 H 0.083 0.917 9 N -0.301 5.301 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.160 4.160 14 C 0.028 3.972 15 H 0.149 0.851 16 N -0.379 5.379 17 C 0.351 3.649 18 O -0.341 6.341 19 C -0.240 4.240 20 C -0.111 4.111 21 O 0.030 5.970 22 N -0.069 5.069 23 C -0.083 4.083 24 C -0.042 4.042 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.160 4.160 28 C -0.152 4.152 29 C 0.033 3.967 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.211 0.789 40 H 0.237 0.763 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -12.182 -3.335 6.073 14.015 hybrid contribution 0.882 0.019 -0.327 0.941 sum -11.300 -3.315 5.746 13.104 Atomic orbital electron populations 1.69837 1.03897 1.26206 1.50030 1.24970 0.95295 0.97864 1.00842 0.86491 0.79498 0.85214 0.77067 1.20675 1.22048 1.21815 1.19035 0.94445 0.85526 1.41610 0.91662 1.44027 1.35456 1.01031 1.49584 1.20416 0.96389 0.87879 0.92514 1.22908 0.95873 0.98098 1.01694 1.21320 0.95552 1.02142 0.95300 1.21389 0.99375 0.97241 0.98041 1.21252 0.84568 0.96808 0.94553 0.85128 1.46329 1.33604 1.08422 1.49498 1.16909 0.81347 0.85128 0.81531 1.90992 1.63120 1.32501 1.47460 1.22901 1.02603 0.92826 1.05679 1.26314 0.89864 1.00587 0.94367 1.84530 1.41840 1.16615 1.53997 1.73564 1.22274 0.91965 1.19065 1.24654 0.91179 0.97625 0.94843 1.20874 1.01036 0.84762 0.97570 1.22389 0.96759 0.95376 1.00550 1.22104 0.99821 0.95656 0.98382 1.22101 0.99668 0.97026 0.97210 1.22462 1.01741 0.94186 0.96845 1.20413 0.85422 1.01173 0.89704 0.92744 0.95006 0.95654 0.92998 0.93973 0.90609 0.94458 0.91967 0.92862 0.78907 0.76253 0.85877 0.91596 0.91212 0.91453 0.91902 0.91466 0.91887 0.91253 0.91439 0.88721 0.97837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 7.78 55.49 0.43 -23.12 16 2 C 0.01 0.33 4.85 -17.43 -0.08 0.24 16 3 Si 0.89 21.81 29.60 -169.99 -5.03 16.78 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.28 -7.40 9.61 -15.06 -0.14 -7.55 16 8 H 0.07 1.77 7.90 -52.49 -0.41 1.35 16 9 N -0.58 -13.79 2.60 -175.09 -0.45 -14.25 16 10 C 0.16 3.18 5.17 -4.66 -0.02 3.15 16 11 C -0.14 -2.61 6.41 -24.76 -0.16 -2.77 16 12 C -0.11 -1.89 5.66 -27.10 -0.15 -2.05 16 13 C -0.12 -2.02 5.24 -28.31 -0.15 -2.17 16 14 C 0.13 2.57 1.82 -71.39 -0.13 2.44 16 15 H 0.13 3.18 4.60 -51.93 -0.24 2.94 16 16 N -0.73 -11.77 4.90 -58.31 -0.29 -12.05 16 17 C 0.57 10.29 7.65 -12.53 -0.10 10.19 16 18 O -0.47 -10.54 12.58 5.27 0.07 -10.47 16 19 C -0.23 -3.48 6.47 -102.89 -0.67 -4.14 16 20 C -0.03 -0.32 11.85 30.42 0.36 0.04 16 21 O 0.09 1.13 11.06 18.65 0.21 1.33 16 22 N -0.36 -5.25 11.85 34.78 0.41 -4.84 16 23 C 0.08 1.22 6.21 -79.77 -0.50 0.72 16 24 C -0.02 -0.35 3.34 -89.61 -0.30 -0.65 16 25 C -0.11 -1.47 6.25 -25.07 -0.16 -1.63 16 26 C -0.12 -1.39 6.80 -25.61 -0.17 -1.56 16 27 C -0.12 -1.41 6.80 -25.61 -0.17 -1.58 16 28 C -0.11 -1.52 6.28 -24.90 -0.16 -1.68 16 29 C 0.16 3.53 4.63 -5.21 -0.02 3.51 16 30 H 0.26 7.35 8.06 -40.82 -0.33 7.02 16 31 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 32 H 0.03 0.47 6.88 -51.93 -0.36 0.11 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.65 6.82 -51.92 -0.35 1.30 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.99 6.27 -51.93 -0.33 0.66 16 38 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.38 4.57 7.77 -40.82 -0.32 4.25 16 40 H 0.22 1.31 7.68 -52.48 -0.40 0.90 16 41 H 0.12 2.18 6.41 -51.93 -0.33 1.84 16 42 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 0.89 7.92 -51.93 -0.41 0.48 16 50 H 0.09 2.49 5.79 -51.93 -0.30 2.19 16 51 H 0.00 0.07 8.12 -51.93 -0.42 -0.35 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -30.14 388.30 -9.59 -39.72 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.06 Total: 6.53 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.73 Total: -5.48 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.10 Total: -54.26 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.27 Total: -9.14 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.14 -9.59 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034241983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.022 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds