Wall clock time and date at job start Wed Apr 1 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99516 * 2 1 4 4 H 1.48497 * 109.46972 * 90.00173 * 3 2 1 5 5 H 1.48494 * 109.47349 * 329.99770 * 3 2 1 6 6 H 1.48504 * 109.46591 * 209.99424 * 3 2 1 7 7 C 1.38810 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99869 * 151.48180 * 7 2 1 9 9 N 1.36934 * 119.99996 * 331.48580 * 7 2 1 10 10 C 1.43427 * 120.53682 * 325.95496 * 9 7 2 11 11 C 1.54400 * 116.39212 * 271.72869 * 10 9 7 12 12 C 1.54842 * 110.07145 * 318.65267 * 11 10 9 13 13 C 1.50124 * 110.81748 * 321.07689 * 12 11 10 14 14 C 1.52522 * 105.41906 * 97.67991 * 13 12 11 15 15 H 1.09001 * 108.40040 * 31.74462 * 14 13 12 16 16 N 1.46496 * 108.52485 * 149.35148 * 14 13 12 17 17 C 1.34780 * 120.00111 * 209.71888 * 16 14 13 18 18 O 1.21606 * 119.99895 * 0.02562 * 17 16 14 19 19 C 1.47418 * 119.99643 * 180.02562 * 17 16 14 20 20 C 1.36096 * 126.44510 * 180.02562 * 19 17 16 21 21 O 1.34259 * 106.95323 * 179.97438 * 20 19 17 22 22 C 1.34054 * 108.22014 * 359.97438 * 21 20 19 23 23 C 1.50708 * 125.37385 * 180.02562 * 22 21 20 24 24 C 1.54265 * 110.03054 * 57.14125 * 23 22 21 25 25 C 1.54895 * 104.19313 * 217.10347 * 24 23 22 26 26 C 1.54885 * 102.74615 * 37.94478 * 25 24 23 27 27 C 1.53879 * 110.03212 * 299.97345 * 23 22 21 28 28 N 1.29930 * 109.24757 * 359.74580 * 22 21 20 29 29 C 1.46242 * 114.27867 * 270.59530 * 14 13 12 30 30 H 0.97005 * 119.99731 * 174.22457 * 1 2 3 31 31 H 1.09001 * 108.16051 * 33.31296 * 10 9 7 32 32 H 1.09010 * 108.15671 * 149.87637 * 10 9 7 33 33 H 1.08998 * 109.44706 * 198.44087 * 11 10 9 34 34 H 1.09003 * 109.34761 * 78.80752 * 11 10 9 35 35 H 1.08994 * 109.21440 * 200.72831 * 12 11 10 36 36 H 1.08997 * 109.17234 * 81.39032 * 12 11 10 37 37 H 1.09007 * 110.24832 * 338.70653 * 13 12 11 38 38 H 1.09000 * 110.36908 * 216.71784 * 13 12 11 39 39 H 0.97005 * 120.00012 * 29.72157 * 16 14 13 40 40 H 1.08001 * 126.52578 * 359.93420 * 20 19 17 41 41 H 1.08997 * 110.01597 * 178.58229 * 23 22 21 42 42 H 1.08997 * 110.49110 * 335.78306 * 24 23 22 43 43 H 1.08997 * 110.48254 * 98.42615 * 24 23 22 44 44 H 1.09000 * 110.75737 * 279.63067 * 25 24 23 45 45 H 1.09004 * 110.75257 * 156.25912 * 25 24 23 46 46 H 1.09000 * 110.48552 * 203.37487 * 26 25 24 47 47 H 1.09000 * 110.48653 * 80.74048 * 26 25 24 48 48 H 1.08997 * 110.03467 * 238.57058 * 27 23 22 49 49 H 1.09005 * 110.03280 * 359.95687 * 27 23 22 50 50 H 1.09000 * 109.84427 * 298.90255 * 29 14 13 51 51 H 1.09000 * 109.84912 * 177.91313 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 2.9920 -1.2590 -0.4460 9 7 1.4502 -2.3158 0.5671 10 6 0.6054 -2.2002 1.7204 11 6 1.3096 -2.2402 3.0939 12 6 2.4178 -3.3216 3.0916 13 6 1.9719 -4.5409 2.3379 14 6 2.5688 -4.3955 0.9418 15 1 3.5161 -3.8629 1.0264 16 7 2.8350 -5.7335 0.4078 17 6 3.8455 -5.9224 -0.4639 18 8 4.5365 -4.9823 -0.8067 19 6 4.1129 -7.2687 -1.0016 20 6 5.0930 -7.6072 -1.8832 21 8 4.9819 -8.9268 -2.1044 22 6 3.9569 -9.3893 -1.3747 23 6 3.4924 -10.8224 -1.3327 24 6 4.6533 -11.7417 -0.9005 25 6 4.4585 -13.0234 -1.7480 26 6 3.9874 -12.4625 -3.1127 27 6 3.0689 -11.2807 -2.7393 28 7 3.4308 -8.4080 -0.7048 29 6 1.7158 -3.6786 -0.0052 30 1 -0.4850 -0.8358 -0.0845 31 1 0.0616 -1.2582 1.6501 32 1 -0.1237 -3.0101 1.6899 33 1 0.5797 -2.4726 3.8693 34 1 1.7549 -1.2668 3.2998 35 1 2.6493 -3.6001 4.1196 36 1 3.3128 -2.9159 2.6199 37 1 0.8838 -4.5726 2.2815 38 1 2.3506 -5.4432 2.8180 39 1 2.2840 -6.4834 0.6815 40 1 5.8211 -6.9410 -2.3219 41 1 2.6571 -10.9237 -0.6398 42 1 5.6128 -11.2767 -1.1270 43 1 4.5817 -11.9725 0.1624 44 1 3.6938 -13.6643 -1.3090 45 1 5.4001 -13.5619 -1.8559 46 1 3.4299 -13.2194 -3.6643 47 1 4.8393 -12.1140 -3.6965 48 1 2.0284 -11.6052 -2.7288 49 1 3.1987 -10.4663 -3.4522 50 1 0.7757 -4.2147 -0.1357 51 1 2.2252 -3.5843 -0.9642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034464718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:59 Heat of formation + Delta-G solvation = -3.208493 kcal Electronic energy + Delta-G solvation = -30933.751176 eV Core-core repulsion = 26834.765265 eV Total energy + Delta-G solvation = -4098.985911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.65285 -39.77708 -38.54112 -37.77708 -35.04700 -34.67125 -33.21519 -31.66793 -30.91597 -29.82702 -29.24425 -28.38958 -26.08622 -24.60459 -24.29707 -22.78919 -22.57050 -21.23613 -20.95480 -20.24237 -19.81824 -19.02641 -18.06050 -17.14449 -16.98760 -16.76756 -16.12960 -16.00439 -15.72647 -14.89001 -14.52727 -14.28114 -14.18261 -14.11474 -13.85543 -13.68110 -13.58837 -13.39977 -12.85298 -12.50470 -12.29816 -12.28177 -12.03796 -11.69386 -11.64055 -11.59019 -11.38243 -11.24654 -11.09964 -11.07543 -11.02018 -10.67948 -10.63746 -10.33338 -10.18267 -10.06042 -9.96491 -9.92669 -9.67099 -9.21813 -9.18676 -8.82684 -8.26672 -6.78473 -5.95635 -3.28760 0.98415 1.86265 2.32705 3.20896 3.40957 3.55863 3.56935 3.59963 3.74411 4.04181 4.07545 4.40455 4.61449 4.69902 4.76863 4.88469 4.94029 4.97461 5.05562 5.15268 5.15533 5.27367 5.32488 5.35334 5.42308 5.43528 5.48348 5.51054 5.59073 5.62562 5.65703 5.75007 5.83272 5.89145 6.01336 6.02479 6.08562 6.25686 6.28721 6.49872 6.59391 6.66871 6.74270 6.82965 6.89737 6.97124 7.13322 7.27343 7.39656 7.77116 8.15706 8.38068 8.66030 9.16515 9.88834 10.33536 11.20211 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.002178 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.159503 B =12854.119948 C =13360.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.020 4.020 3 Si 1.063 2.937 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.345 4.345 8 H 0.052 0.948 9 N -0.580 5.580 10 C 0.137 3.863 11 C -0.138 4.138 12 C -0.106 4.106 13 C -0.117 4.117 14 C 0.133 3.867 15 H 0.088 0.912 16 N -0.710 5.710 17 C 0.594 3.406 18 O -0.531 6.531 19 C -0.065 4.065 20 C 0.006 3.994 21 O -0.195 6.195 22 C 0.202 3.798 23 C 0.004 3.996 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.121 4.121 28 N -0.459 5.459 29 C 0.127 3.873 30 H 0.269 0.731 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.402 0.598 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.028 0.972 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -26.950 -1.205 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.223 4.223 3 Si 0.893 3.107 4 H -0.220 1.220 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.474 4.474 8 H 0.070 0.930 9 N -0.302 5.302 10 C 0.009 3.991 11 C -0.179 4.179 12 C -0.144 4.144 13 C -0.155 4.155 14 C 0.029 3.971 15 H 0.106 0.894 16 N -0.360 5.360 17 C 0.378 3.622 18 O -0.408 6.408 19 C -0.185 4.185 20 C -0.067 4.067 21 O -0.080 6.080 22 C -0.008 4.008 23 C -0.016 4.016 24 C -0.159 4.159 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.159 4.159 28 N -0.189 5.189 29 C 0.002 3.998 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.247 0.753 41 H 0.135 0.865 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.046 0.954 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.157 -24.617 -1.005 25.656 hybrid contribution 0.581 -1.812 -0.347 1.934 sum 7.738 -26.428 -1.352 27.571 Atomic orbital electron populations 1.70742 1.06888 1.30160 1.46420 1.25854 0.96299 1.01585 0.98606 0.83548 0.74771 0.75827 0.76562 1.21983 1.21689 1.21726 1.19918 0.99428 0.89028 1.39023 0.92975 1.43810 1.58615 1.00925 1.26843 1.20421 0.92212 1.01265 0.85207 1.22719 0.97469 0.97936 0.99766 1.21307 0.99909 0.95041 0.98189 1.21288 1.01428 0.98278 0.94531 1.21009 1.01537 0.80822 0.93705 0.89364 1.46303 1.32411 1.12387 1.44901 1.16782 0.81117 0.84884 0.79386 1.90869 1.49197 1.41168 1.59578 1.21980 0.98439 0.94567 1.03484 1.25324 1.01043 0.81249 0.99128 1.84351 1.45079 1.22751 1.55865 1.26171 0.86170 0.97698 0.90717 1.20476 0.99266 0.81982 0.99842 1.22503 0.97602 0.95140 1.00644 1.22507 1.01661 0.96703 0.95238 1.22387 0.99339 0.97089 0.97431 1.22258 1.00512 0.98674 0.94450 1.70775 1.27302 0.97774 1.23059 1.20709 0.96117 0.87269 0.95688 0.92018 0.90870 0.96374 0.93477 0.92638 0.93762 0.91651 0.90938 0.92099 0.76344 0.75290 0.86499 0.90786 0.90447 0.90924 0.90988 0.91091 0.91260 0.90280 0.91118 0.95435 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 12.19 55.49 0.68 -26.47 16 2 C -0.02 -0.59 4.82 -17.43 -0.08 -0.67 16 3 Si 1.06 25.98 30.00 -169.99 -5.10 20.88 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.34 -9.84 9.43 -15.06 -0.14 -9.99 16 8 H 0.05 1.56 7.97 -52.48 -0.42 1.14 16 9 N -0.58 -14.66 2.37 -175.40 -0.41 -15.07 16 10 C 0.14 3.20 4.45 -4.93 -0.02 3.18 16 11 C -0.14 -2.75 6.40 -25.03 -0.16 -2.91 16 12 C -0.11 -1.90 5.65 -27.19 -0.15 -2.05 16 13 C -0.12 -1.93 5.25 -28.41 -0.15 -2.08 16 14 C 0.13 2.51 2.01 -71.39 -0.14 2.37 16 15 H 0.09 1.93 6.22 -51.93 -0.32 1.61 16 16 N -0.71 -11.62 4.87 -58.30 -0.28 -11.90 16 17 C 0.59 10.30 7.73 -12.52 -0.10 10.21 16 18 O -0.53 -11.01 16.42 5.27 0.09 -10.93 16 19 C -0.06 -0.93 6.99 -83.02 -0.58 -1.51 16 20 C 0.01 0.07 11.95 29.96 0.36 0.43 16 21 O -0.19 -2.11 10.55 6.50 0.07 -2.04 16 22 C 0.20 2.15 6.50 -13.08 -0.09 2.07 16 23 C 0.00 0.03 3.44 -90.65 -0.31 -0.29 16 24 C -0.12 -0.70 6.35 -25.07 -0.16 -0.86 16 25 C -0.12 -0.55 6.91 -24.74 -0.17 -0.72 16 26 C -0.12 -0.61 6.83 -25.08 -0.17 -0.78 16 27 C -0.12 -0.74 6.45 -25.61 -0.17 -0.90 16 28 N -0.46 -6.02 11.06 -7.65 -0.08 -6.11 16 29 C 0.13 2.82 5.54 -5.20 -0.03 2.80 16 30 H 0.27 8.16 7.23 -40.82 -0.30 7.87 16 31 H 0.07 1.96 5.13 -51.93 -0.27 1.69 16 32 H 0.02 0.39 6.89 -51.92 -0.36 0.04 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.31 6.82 -51.93 -0.35 0.95 16 37 H 0.07 1.20 6.28 -51.92 -0.33 0.88 16 38 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.40 5.74 8.34 -40.82 -0.34 5.40 16 40 H 0.23 2.13 8.06 -52.49 -0.42 1.70 16 41 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.49 7.71 -51.93 -0.40 0.09 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 50 H 0.03 0.59 8.13 -51.93 -0.42 0.16 16 51 H 0.06 1.59 7.93 -51.93 -0.41 1.18 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -33.12 399.30 -9.48 -42.60 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.18 Total: 4.74 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.27 Total: -1.71 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.11 Total: -59.55 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.16 Total: -12.97 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.12 -9.48 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034464718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.387 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds