Wall clock time and date at job start Wed Apr 1 2020 04:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99516 * 2 1 4 4 H 1.48497 * 109.46972 * 90.00173 * 3 2 1 5 5 H 1.48494 * 109.47349 * 329.99770 * 3 2 1 6 6 H 1.48504 * 109.46591 * 209.99424 * 3 2 1 7 7 C 1.38810 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99869 * 151.48180 * 7 2 1 9 9 N 1.36934 * 119.99996 * 331.48580 * 7 2 1 10 10 C 1.43427 * 120.53682 * 325.95496 * 9 7 2 11 11 C 1.54400 * 116.39212 * 271.72869 * 10 9 7 12 12 C 1.54842 * 110.07145 * 318.65267 * 11 10 9 13 13 C 1.50124 * 110.81748 * 321.07689 * 12 11 10 14 14 C 1.52522 * 105.41906 * 97.67991 * 13 12 11 15 15 H 1.09001 * 108.40040 * 31.74462 * 14 13 12 16 16 N 1.46496 * 108.52485 * 149.35148 * 14 13 12 17 17 C 1.34780 * 120.00111 * 209.71888 * 16 14 13 18 18 O 1.21606 * 119.99895 * 0.02562 * 17 16 14 19 19 C 1.47418 * 119.99643 * 180.02562 * 17 16 14 20 20 C 1.36096 * 126.44510 * 180.02562 * 19 17 16 21 21 O 1.34259 * 106.95323 * 179.97438 * 20 19 17 22 22 C 1.34054 * 108.22014 * 359.97438 * 21 20 19 23 23 C 1.50708 * 125.37385 * 180.02562 * 22 21 20 24 24 C 1.54265 * 110.03054 * 57.14125 * 23 22 21 25 25 C 1.54895 * 104.19313 * 217.10347 * 24 23 22 26 26 C 1.54885 * 102.74615 * 37.94478 * 25 24 23 27 27 C 1.53879 * 110.03212 * 299.97345 * 23 22 21 28 28 N 1.29930 * 109.24757 * 359.74580 * 22 21 20 29 29 C 1.46242 * 114.27867 * 270.59530 * 14 13 12 30 30 H 0.97005 * 119.99731 * 174.22457 * 1 2 3 31 31 H 1.09001 * 108.16051 * 33.31296 * 10 9 7 32 32 H 1.09010 * 108.15671 * 149.87637 * 10 9 7 33 33 H 1.08998 * 109.44706 * 198.44087 * 11 10 9 34 34 H 1.09003 * 109.34761 * 78.80752 * 11 10 9 35 35 H 1.08994 * 109.21440 * 200.72831 * 12 11 10 36 36 H 1.08997 * 109.17234 * 81.39032 * 12 11 10 37 37 H 1.09007 * 110.24832 * 338.70653 * 13 12 11 38 38 H 1.09000 * 110.36908 * 216.71784 * 13 12 11 39 39 H 0.97005 * 120.00012 * 29.72157 * 16 14 13 40 40 H 1.08001 * 126.52578 * 359.93420 * 20 19 17 41 41 H 1.08997 * 110.01597 * 178.58229 * 23 22 21 42 42 H 1.08997 * 110.49110 * 335.78306 * 24 23 22 43 43 H 1.08997 * 110.48254 * 98.42615 * 24 23 22 44 44 H 1.09000 * 110.75737 * 279.63067 * 25 24 23 45 45 H 1.09004 * 110.75257 * 156.25912 * 25 24 23 46 46 H 1.09000 * 110.48552 * 203.37487 * 26 25 24 47 47 H 1.09000 * 110.48653 * 80.74048 * 26 25 24 48 48 H 1.08997 * 110.03467 * 238.57058 * 27 23 22 49 49 H 1.09005 * 110.03280 * 359.95687 * 27 23 22 50 50 H 1.09000 * 109.84427 * 298.90255 * 29 14 13 51 51 H 1.09000 * 109.84912 * 177.91313 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 2.9920 -1.2590 -0.4460 9 7 1.4502 -2.3158 0.5671 10 6 0.6054 -2.2002 1.7204 11 6 1.3096 -2.2402 3.0939 12 6 2.4178 -3.3216 3.0916 13 6 1.9719 -4.5409 2.3379 14 6 2.5688 -4.3955 0.9418 15 1 3.5161 -3.8629 1.0264 16 7 2.8350 -5.7335 0.4078 17 6 3.8455 -5.9224 -0.4639 18 8 4.5365 -4.9823 -0.8067 19 6 4.1129 -7.2687 -1.0016 20 6 5.0930 -7.6072 -1.8832 21 8 4.9819 -8.9268 -2.1044 22 6 3.9569 -9.3893 -1.3747 23 6 3.4924 -10.8224 -1.3327 24 6 4.6533 -11.7417 -0.9005 25 6 4.4585 -13.0234 -1.7480 26 6 3.9874 -12.4625 -3.1127 27 6 3.0689 -11.2807 -2.7393 28 7 3.4308 -8.4080 -0.7048 29 6 1.7158 -3.6786 -0.0052 30 1 -0.4850 -0.8358 -0.0845 31 1 0.0616 -1.2582 1.6501 32 1 -0.1237 -3.0101 1.6899 33 1 0.5797 -2.4726 3.8693 34 1 1.7549 -1.2668 3.2998 35 1 2.6493 -3.6001 4.1196 36 1 3.3128 -2.9159 2.6199 37 1 0.8838 -4.5726 2.2815 38 1 2.3506 -5.4432 2.8180 39 1 2.2840 -6.4834 0.6815 40 1 5.8211 -6.9410 -2.3219 41 1 2.6571 -10.9237 -0.6398 42 1 5.6128 -11.2767 -1.1270 43 1 4.5817 -11.9725 0.1624 44 1 3.6938 -13.6643 -1.3090 45 1 5.4001 -13.5619 -1.8559 46 1 3.4299 -13.2194 -3.6643 47 1 4.8393 -12.1140 -3.6965 48 1 2.0284 -11.6052 -2.7288 49 1 3.1987 -10.4663 -3.4522 50 1 0.7757 -4.2147 -0.1357 51 1 2.2252 -3.5843 -0.9642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034464718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:58 Heat of formation + Delta-G solvation = -25.490443 kcal Electronic energy + Delta-G solvation = -30934.717393 eV Core-core repulsion = 26834.765265 eV Total energy + Delta-G solvation = -4099.952129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.59328 -41.26271 -39.44914 -38.97882 -36.47495 -36.02487 -34.87371 -32.93995 -32.43134 -31.41288 -29.67053 -29.12508 -27.98533 -26.18485 -25.82271 -24.25075 -23.49250 -22.21833 -21.79898 -21.53996 -20.98281 -20.54882 -19.25145 -19.02721 -17.91662 -17.75861 -17.52622 -16.74622 -16.49098 -16.39419 -16.18812 -15.91048 -15.57656 -15.45142 -15.13097 -14.90201 -14.66579 -14.41286 -14.28498 -14.26972 -14.05270 -13.31076 -12.94214 -12.90128 -12.64075 -12.57526 -12.42555 -12.28353 -12.04713 -12.02096 -11.99721 -11.94792 -11.92661 -11.90155 -11.70518 -11.68130 -11.45117 -11.39995 -11.35646 -11.12738 -10.58800 -10.28560 -10.04252 -8.92703 -8.16852 -5.53230 -0.02798 0.85637 1.44932 1.54608 1.61170 1.80026 1.94082 2.14136 2.59535 2.68974 3.14390 3.43119 3.54631 3.60247 3.61962 3.69686 3.78436 3.99503 4.03412 4.11009 4.32922 4.40381 4.40911 4.42036 4.45415 4.47164 4.50994 4.52627 4.55764 4.69433 4.75654 4.78516 4.88795 4.90865 4.92849 4.93905 5.06458 5.08251 5.15087 5.23139 5.26168 5.27432 5.30996 5.36622 5.37791 5.45661 5.48564 5.53755 5.87233 6.22237 6.37956 6.52568 7.02556 7.07480 7.74585 8.18190 8.90944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.002178 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.159503 B =12854.119948 C =13360.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.064 4.064 3 Si 1.109 2.891 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.352 4.352 8 H 0.027 0.973 9 N -0.595 5.595 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.106 4.106 14 C 0.147 3.853 15 H 0.055 0.945 16 N -0.699 5.699 17 C 0.593 3.407 18 O -0.574 6.574 19 C -0.094 4.094 20 C 0.024 3.976 21 O -0.189 6.189 22 C 0.212 3.788 23 C 0.002 3.998 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.120 4.120 28 N -0.478 5.478 29 C 0.135 3.865 30 H 0.256 0.744 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.415 0.585 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.039 0.961 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -29.747 -0.036 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.262 4.262 3 Si 0.933 3.067 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.482 4.482 8 H 0.045 0.955 9 N -0.318 5.318 10 C 0.010 3.990 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.143 4.143 14 C 0.042 3.958 15 H 0.073 0.927 16 N -0.350 5.350 17 C 0.379 3.621 18 O -0.454 6.454 19 C -0.213 4.213 20 C -0.051 4.051 21 O -0.075 6.075 22 C 0.002 3.998 23 C -0.018 4.018 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.158 4.158 28 N -0.208 5.208 29 C 0.010 3.990 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.253 0.747 40 H 0.267 0.733 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.351 -27.471 0.192 28.438 hybrid contribution 0.507 -1.063 -0.784 1.414 sum 7.858 -28.533 -0.592 29.602 Atomic orbital electron populations 1.70856 1.07482 1.29311 1.48399 1.27090 0.96417 1.04516 0.98217 0.82938 0.74004 0.72422 0.77287 1.20539 1.21429 1.20733 1.19912 0.98459 0.90726 1.39112 0.95520 1.43935 1.58802 1.01209 1.27863 1.20443 0.92308 0.99926 0.86310 1.22621 0.98560 0.97913 0.98120 1.21253 0.97787 0.94657 1.00205 1.21252 1.01636 0.99119 0.92338 1.20573 0.99192 0.81399 0.94619 0.92660 1.46093 1.32490 1.11745 1.44648 1.17157 0.80489 0.85684 0.78732 1.90842 1.50662 1.42946 1.60993 1.21614 1.00465 0.93736 1.05502 1.25715 1.00130 0.81701 0.97529 1.84401 1.45174 1.22187 1.55761 1.26958 0.85125 0.98545 0.89139 1.20781 1.00113 0.79986 1.00884 1.22513 0.96372 0.95366 1.01474 1.22506 1.02455 0.96100 0.94460 1.22394 0.99007 0.96846 0.97874 1.22278 1.01611 0.98644 0.93279 1.70730 1.27971 0.97746 1.24316 1.20665 0.96749 0.86507 0.95066 0.93440 0.94401 0.94844 0.90215 0.94716 0.90208 0.94514 0.90299 0.88689 0.74746 0.73281 0.85499 0.91816 0.89588 0.89697 0.90256 0.89868 0.91861 0.89025 0.92687 0.94309 0.95118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 12.19 21.65 0.26 -56.54 16 2 C -0.06 -3.77 4.82 84.86 0.41 -3.37 16 3 Si 1.11 53.49 30.00 68.60 2.06 55.55 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.35 -20.95 9.43 84.03 0.79 -20.15 16 8 H 0.03 1.70 7.97 -2.91 -0.02 1.68 16 9 N -0.60 -31.04 2.37 -708.84 -1.68 -32.72 16 10 C 0.14 6.46 4.45 87.42 0.39 6.85 16 11 C -0.13 -5.10 6.40 31.70 0.20 -4.89 16 12 C -0.10 -3.42 5.65 30.30 0.17 -3.25 16 13 C -0.11 -3.25 5.25 29.51 0.16 -3.09 16 14 C 0.15 5.59 2.01 42.75 0.09 5.68 16 15 H 0.06 2.51 6.22 -2.39 -0.01 2.50 16 16 N -0.70 -22.77 4.87 -456.62 -2.22 -24.99 16 17 C 0.59 20.98 7.73 86.66 0.67 21.65 16 18 O -0.57 -24.89 16.42 -4.05 -0.07 -24.96 16 19 C -0.09 -2.69 6.99 40.41 0.28 -2.41 16 20 C 0.02 0.54 11.95 67.32 0.80 1.35 16 21 O -0.19 -3.88 10.55 0.33 0.00 -3.88 16 22 C 0.21 4.24 6.50 88.39 0.57 4.81 16 23 C 0.00 0.02 3.44 -10.81 -0.04 -0.02 16 24 C -0.12 -1.11 6.35 31.67 0.20 -0.91 16 25 C -0.12 -0.72 6.91 31.89 0.22 -0.50 16 26 C -0.12 -0.93 6.83 31.67 0.22 -0.71 16 27 C -0.12 -1.23 6.45 31.32 0.20 -1.03 16 28 N -0.48 -12.06 11.06 -293.03 -3.24 -15.30 16 29 C 0.13 6.17 5.54 83.58 0.46 6.63 16 30 H 0.26 16.07 7.23 -92.70 -0.67 15.40 16 31 H 0.04 2.08 5.13 -2.39 -0.01 2.07 16 32 H 0.03 1.44 6.89 -2.38 -0.02 1.42 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.04 1.46 6.82 -2.39 -0.02 1.44 16 37 H 0.08 2.38 6.28 -2.38 -0.01 2.37 16 38 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 39 H 0.42 11.31 8.34 -92.70 -0.77 10.54 16 40 H 0.25 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 0.74 7.71 -2.39 -0.02 0.72 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.05 0.75 7.67 -2.38 -0.02 0.73 16 50 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 51 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 Total: -1.00 -75.55 399.30 1.19 -74.36 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.27 Total: 21.84 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.80 Total: 6.64 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -6.88 Total: -129.55 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.06 Total: 55.55 kcal Total: -75.55 1.19 -74.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034464718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.867 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds