Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47218 * 265.20188 * 3 2 1 5 5 H 1.48496 * 109.46975 * 145.19901 * 3 2 1 6 6 H 1.48504 * 109.46647 * 25.20467 * 3 2 1 7 7 C 1.38821 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99792 * 332.99854 * 7 2 1 9 9 N 1.36933 * 119.99955 * 152.99771 * 7 2 1 10 10 C 1.47024 * 125.64785 * 349.69911 * 9 7 2 11 11 C 1.54322 * 107.27070 * 181.02509 * 10 9 7 12 12 C 1.55159 * 102.94404 * 22.19329 * 11 10 9 13 13 H 1.09000 * 111.00551 * 82.57085 * 12 11 10 14 14 N 1.46894 * 111.00716 * 206.42473 * 12 11 10 15 15 C 1.46896 * 110.99984 * 304.30123 * 14 12 11 16 16 C 1.53243 * 109.34108 * 172.74492 * 15 14 12 17 17 N 1.47081 * 108.52224 * 53.83143 * 16 15 14 18 18 C 1.34770 * 120.88323 * 128.79277 * 17 16 15 19 19 O 1.21276 * 119.99825 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00029 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.47081 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47081 * 180.02562 * 21 20 18 23 23 C 1.34514 * 125.78999 * 89.71088 * 22 21 20 24 24 C 1.41390 * 106.84167 * 179.88988 * 23 22 21 25 25 C 1.34514 * 106.83939 * 0.37538 * 24 23 22 26 26 O 1.34308 * 125.78959 * 270.02264 * 22 21 20 27 27 C 1.47080 * 118.23391 * 308.81590 * 17 16 15 28 28 C 1.46896 * 111.00245 * 179.97438 * 14 12 11 29 29 C 1.47425 * 125.64812 * 169.39265 * 9 7 2 30 30 H 0.97002 * 120.00332 * 185.05313 * 1 2 3 31 31 H 1.09007 * 109.88407 * 300.44052 * 10 9 7 32 32 H 1.09002 * 109.88260 * 61.60641 * 10 9 7 33 33 H 1.09006 * 110.72452 * 140.55543 * 11 10 9 34 34 H 1.08999 * 110.72029 * 263.82694 * 11 10 9 35 35 H 1.08999 * 109.49746 * 292.70637 * 15 14 12 36 36 H 1.09000 * 109.49590 * 52.78858 * 15 14 12 37 37 H 1.09004 * 109.63044 * 294.11816 * 16 15 14 38 38 H 1.09003 * 109.78930 * 173.63254 * 16 15 14 39 39 H 1.09002 * 109.47147 * 299.99931 * 20 18 17 40 40 H 1.08997 * 109.47532 * 59.99871 * 20 18 17 41 41 H 1.08997 * 109.46932 * 299.99459 * 21 20 18 42 42 H 1.08992 * 109.47065 * 59.99979 * 21 20 18 43 43 H 1.07996 * 126.58130 * 0.02756 * 23 22 21 44 44 H 1.07991 * 126.57714 * 180.12470 * 24 23 22 45 45 H 1.07997 * 125.79427 * 179.79279 * 25 24 23 46 46 H 1.09000 * 109.62558 * 291.47416 * 27 17 16 47 47 H 1.09000 * 109.79075 * 170.99073 * 27 17 16 48 48 H 1.09004 * 109.49369 * 307.21405 * 28 14 12 49 49 H 1.09001 * 109.49599 * 67.26423 * 28 14 12 50 50 H 1.08998 * 110.36628 * 274.74171 * 29 9 7 51 51 H 1.09000 * 110.36661 * 37.07298 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5992 1.9879 -1.3951 5 1 3.4933 1.4715 0.7990 6 1 1.4006 2.6798 0.5963 7 6 2.0102 -1.2022 0.0005 8 1 1.5585 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2129 -1.3324 11 6 5.3063 -0.7385 -1.7439 12 6 5.1422 -2.2776 -1.6366 13 1 4.6778 -2.6846 -2.5348 14 7 6.4328 -2.9277 -1.3730 15 6 7.4225 -2.5676 -2.3971 16 6 8.7951 -3.1146 -1.9909 17 7 8.6653 -4.5565 -1.7314 18 6 9.4974 -5.4420 -2.3145 19 8 9.3756 -6.6275 -2.0895 20 6 10.5790 -4.9591 -3.2460 21 6 11.3753 -6.1570 -3.7676 22 6 12.4573 -5.6740 -4.6986 23 6 13.7068 -5.3279 -4.3402 24 6 14.3797 -4.9413 -5.5221 25 6 13.4987 -5.0663 -6.5308 26 8 12.3360 -5.5105 -6.0262 27 6 7.6030 -5.0064 -0.8191 28 6 6.2773 -4.3848 -1.2708 29 6 4.1989 -2.4029 -0.4114 30 1 -0.4851 -0.8368 0.0740 31 1 3.3208 -0.0012 -2.2215 32 1 4.0225 0.6905 -0.7322 33 1 5.5419 -0.4462 -2.7673 34 1 6.0721 -0.3832 -1.0543 35 1 7.1284 -2.9976 -3.3544 36 1 7.4754 -1.4825 -2.4862 37 1 9.1381 -2.6095 -1.0879 38 1 9.5109 -2.9506 -2.7965 39 1 10.1266 -4.4308 -4.0853 40 1 11.2463 -4.2846 -2.7094 41 1 11.8277 -6.6856 -2.9286 42 1 10.7078 -6.8310 -4.3043 43 1 14.1178 -5.3444 -3.3417 44 1 15.4033 -4.6057 -5.5994 45 1 13.6933 -4.8472 -7.5702 46 1 7.8314 -4.6831 0.1965 47 1 7.5268 -6.0934 -0.8489 48 1 5.4996 -4.6175 -0.5433 49 1 5.9982 -4.7900 -2.2435 50 1 4.7660 -2.3270 0.5163 51 1 3.6539 -3.3462 -0.4478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046002898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = 25.187798 kcal Electronic energy + Delta-G solvation = -30410.254133 eV Core-core repulsion = 26312.499578 eV Total energy + Delta-G solvation = -4097.754555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.93351 -40.52965 -38.86572 -36.99448 -34.56297 -34.40957 -33.18231 -32.27688 -31.55207 -29.67621 -29.34766 -28.34189 -26.40750 -25.04992 -23.79493 -23.29672 -22.12833 -21.58344 -20.69814 -20.48805 -19.88205 -19.11402 -18.03877 -17.44928 -17.17853 -16.53521 -16.19896 -16.04138 -15.76504 -15.29421 -15.02194 -14.93060 -14.63674 -14.20308 -14.05727 -13.83483 -13.34139 -13.20768 -13.15888 -13.09074 -12.87971 -12.73404 -12.48329 -12.43334 -12.34519 -12.21404 -11.74278 -11.55883 -11.47361 -11.27149 -11.04713 -11.01275 -10.62350 -10.36647 -10.30509 -10.25484 -10.06037 -9.54557 -9.16802 -8.99238 -8.84341 -8.43157 -8.31692 -7.09361 -6.32793 -3.17387 1.32973 2.22003 2.32623 2.53584 2.76611 3.42018 3.52177 3.68230 3.76835 4.03842 4.42153 4.48557 4.53302 4.60345 4.65762 4.66116 4.70530 4.77963 4.89345 4.97113 5.04082 5.08474 5.14481 5.19203 5.26146 5.29670 5.39848 5.43811 5.45108 5.50877 5.52703 5.57146 5.59420 5.60836 5.70609 5.76469 5.83061 5.88356 6.10875 6.12092 6.16595 6.20279 6.40661 6.51132 6.57004 6.76293 6.78625 7.02200 7.06173 7.20521 7.72343 7.85806 8.34583 9.04553 9.60377 10.27073 11.15856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.001877 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.725384 B =14913.095519 C =15653.540399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.300 1.300 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.118 3.882 11 C -0.121 4.121 12 C 0.068 3.932 13 H 0.052 0.948 14 N -0.527 5.527 15 C 0.038 3.962 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.517 3.483 19 O -0.544 6.544 20 C -0.137 4.137 21 C -0.024 4.024 22 C -0.010 4.010 23 C -0.210 4.210 24 C -0.214 4.214 25 C -0.044 4.044 26 O -0.176 6.176 27 C 0.117 3.883 28 C 0.042 3.958 29 C 0.148 3.852 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.202 0.798 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.036 0.964 50 H 0.034 0.966 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.071 -8.972 -10.395 32.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.904 3.096 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.228 1.228 7 C -0.457 4.457 8 H 0.094 0.906 9 N -0.337 5.337 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.040 4.040 13 H 0.070 0.930 14 N -0.252 5.252 15 C -0.091 4.091 16 C -0.012 4.012 17 N -0.345 5.345 18 C 0.305 3.695 19 O -0.422 6.422 20 C -0.177 4.177 21 C -0.062 4.062 22 C -0.060 4.060 23 C -0.229 4.229 24 C -0.233 4.233 25 C -0.111 4.111 26 O -0.072 6.072 27 C -0.005 4.005 28 C -0.087 4.087 29 C 0.021 3.979 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.219 0.781 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.055 0.945 50 H 0.051 0.949 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 28.601 -7.865 -9.997 31.302 hybrid contribution 0.203 -1.655 -0.683 1.802 sum 28.804 -9.520 -10.679 32.161 Atomic orbital electron populations 1.70923 1.05824 1.29960 1.49187 1.25800 0.96324 1.00857 0.99147 0.83701 0.73749 0.75954 0.76182 1.22197 1.22084 1.22796 1.20014 0.88992 0.97198 1.39514 0.90618 1.44754 1.14289 1.14274 1.60381 1.21637 0.91421 0.92705 0.95011 1.22640 0.98368 0.94185 1.00704 1.22916 0.88196 0.94326 0.98608 0.93049 1.61931 1.08941 1.07932 1.46357 1.22479 0.91757 1.01575 0.93254 1.21926 0.97399 0.79827 1.02075 1.48206 1.32707 1.07219 1.46407 1.20534 0.82359 0.85972 0.80641 1.90706 1.72149 1.16263 1.63046 1.21697 0.96817 0.99564 0.99595 1.19844 0.93639 0.96766 0.95918 1.22451 0.97295 1.04678 0.81573 1.21638 0.94066 1.07029 1.00146 1.21857 1.01382 1.07475 0.92592 1.24058 0.83431 1.03757 0.99868 1.84040 1.35668 1.65733 1.21749 1.21739 0.85409 1.00362 0.93013 1.22481 0.97459 0.87739 1.01036 1.21520 0.90166 0.91940 0.94260 0.92739 0.94290 0.95334 0.91744 0.90534 0.94531 0.88947 0.90125 0.89482 0.88445 0.88265 0.87958 0.89199 0.83426 0.83463 0.78136 0.90500 0.88710 0.88916 0.94537 0.94864 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.82 13.70 55.49 0.76 -28.06 16 2 C -0.02 -0.61 5.43 -17.43 -0.09 -0.70 16 3 Si 1.07 26.97 24.66 -169.99 -4.19 22.78 16 4 H -0.29 -6.95 6.76 56.52 0.38 -6.57 16 5 H -0.29 -7.07 6.71 56.52 0.38 -6.70 16 6 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.33 -9.50 10.43 -15.06 -0.16 -9.66 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 N -0.61 -14.98 3.29 -169.92 -0.56 -15.54 16 10 C 0.12 2.54 4.94 -3.06 -0.02 2.53 16 11 C -0.12 -1.94 5.03 -24.90 -0.13 -2.06 16 12 C 0.07 1.08 2.73 -65.44 -0.18 0.90 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 N -0.53 -6.69 4.52 -223.64 -1.01 -7.70 16 15 C 0.04 0.38 5.43 -3.70 -0.02 0.36 16 16 C 0.11 0.87 6.51 -3.60 -0.02 0.85 16 17 N -0.61 -6.00 3.01 -172.46 -0.52 -6.52 16 18 C 0.52 5.28 7.71 -10.99 -0.08 5.20 16 19 O -0.54 -7.41 15.44 5.56 0.09 -7.32 16 20 C -0.14 -0.96 4.05 -27.88 -0.11 -1.07 16 21 C -0.02 -0.18 5.04 -27.88 -0.14 -0.32 16 22 C -0.01 -0.08 6.58 -35.63 -0.23 -0.32 16 23 C -0.21 -1.59 10.81 -39.70 -0.43 -2.01 16 24 C -0.21 -1.47 10.91 -39.70 -0.43 -1.90 16 25 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 26 O -0.18 -1.57 10.65 5.68 0.06 -1.51 16 27 C 0.12 1.26 6.59 -3.60 -0.02 1.23 16 28 C 0.04 0.50 5.52 -3.70 -0.02 0.47 16 29 C 0.15 2.93 5.95 -2.41 -0.01 2.92 16 30 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 31 H 0.04 0.89 7.83 -51.92 -0.41 0.48 16 32 H 0.03 0.66 3.77 -51.93 -0.20 0.46 16 33 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 34 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.85 6.64 -51.93 -0.34 0.51 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.47 6.02 -51.93 -0.31 0.16 16 39 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 40 H 0.10 0.53 8.00 -51.93 -0.42 0.12 16 41 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.20 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 1.08 7.07 -51.93 -0.37 0.71 16 48 H 0.09 1.15 7.05 -51.93 -0.37 0.78 16 49 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -34.89 395.56 -9.48 -44.37 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.31 Total: -2.95 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.75 Total: -3.52 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -1.33 Total: -57.82 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.15 Total: -8.83 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.19 Total: 22.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.89 -9.48 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046002898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.559 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds