Wall clock time and date at job start Wed Apr 1 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99715 * 2 1 4 4 H 1.48492 * 109.47264 * 239.99774 * 3 2 1 5 5 H 1.48498 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46576 * 119.99728 * 3 2 1 7 7 C 1.38808 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99785 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46656 * 125.33666 * 0.03918 * 9 7 2 11 11 C 1.55518 * 108.14157 * 180.65521 * 10 9 7 12 12 H 1.09005 * 113.05671 * 254.35872 * 11 10 9 13 13 C 1.54150 * 110.00277 * 126.68228 * 11 10 9 14 14 N 1.46764 * 106.58693 * 278.71889 * 13 11 10 15 15 C 1.34777 * 125.33611 * 161.45835 * 14 13 11 16 16 O 1.21283 * 119.99750 * 179.69509 * 15 14 13 17 17 C 1.50702 * 119.99928 * 359.97438 * 15 14 13 18 18 H 1.09003 * 109.19668 * 304.07273 * 17 15 14 19 19 C 1.53285 * 109.20613 * 63.37784 * 17 15 14 20 20 N 1.46789 * 108.50138 * 180.47259 * 19 17 15 21 21 C 1.49419 * 112.10016 * 193.76409 * 20 19 17 22 22 C 1.57034 * 99.32158 * 113.45751 * 21 20 19 23 23 C 1.56479 * 107.13411 * 40.31771 * 22 21 20 24 24 C 1.49516 * 107.60974 * 302.19769 * 20 19 17 25 25 C 1.54374 * 104.43004 * 288.57162 * 24 20 19 26 26 C 1.50167 * 114.92406 * 57.53207 * 24 20 19 27 27 O 1.42795 * 109.20472 * 184.72398 * 17 15 14 28 28 C 1.46658 * 109.32771 * 341.19811 * 14 13 11 29 29 C 1.53678 * 107.97304 * 0.95036 * 28 14 13 30 30 H 1.08996 * 112.77304 * 253.97859 * 29 28 14 31 31 C 1.46754 * 125.33231 * 180.02562 * 9 7 2 32 32 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.76814 * 300.30250 * 10 9 7 34 34 H 1.08996 * 109.76486 * 61.02386 * 10 9 7 35 35 H 1.08998 * 110.16289 * 159.39514 * 13 11 10 36 36 H 1.09000 * 109.96746 * 37.93840 * 13 11 10 37 37 H 1.08994 * 109.63554 * 300.18046 * 19 17 15 38 38 H 1.09000 * 109.62840 * 60.76870 * 19 17 15 39 39 H 1.08994 * 111.42856 * 230.97993 * 21 20 19 40 40 H 1.08998 * 111.42970 * 355.88269 * 21 20 19 41 41 H 1.09004 * 118.34877 * 180.88825 * 22 21 20 42 42 H 1.09000 * 114.70271 * 190.06354 * 23 22 21 43 43 H 1.09005 * 114.69810 * 55.82026 * 23 22 21 44 44 H 1.08994 * 114.72059 * 45.65857 * 25 24 20 45 45 H 1.09003 * 114.71541 * 179.97438 * 25 24 20 46 46 H 1.09002 * 109.69877 * 187.22177 * 26 24 20 47 47 H 1.08994 * 109.74001 * 66.63162 * 26 24 20 48 48 H 1.09004 * 109.76542 * 120.58153 * 28 14 13 49 49 H 1.09003 * 109.76953 * 241.30230 * 28 14 13 50 50 H 1.09007 * 110.02248 * 42.28792 * 31 9 7 51 51 H 1.09002 * 110.02137 * 280.90092 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1346 -2.5244 -0.0008 11 6 -0.4793 -4.0408 0.0166 12 1 -0.8357 -4.4087 -0.9456 13 6 -1.4423 -4.3493 1.1801 14 7 -0.6167 -4.4646 2.3880 15 6 -1.0709 -4.3767 3.6539 16 8 -0.3008 -4.4924 4.5837 17 6 -2.5364 -4.1408 3.9140 18 1 -2.8508 -3.2340 3.3972 19 6 -3.3414 -5.3302 3.3782 20 7 -4.7658 -5.0795 3.6291 21 6 -5.5940 -6.3095 3.4453 22 6 -6.0585 -6.5275 4.9294 23 6 -6.3894 -5.1170 5.5208 24 6 -4.9380 -4.8830 5.1012 25 6 -4.7316 -6.2892 5.7038 26 6 -4.1178 -3.7724 5.6917 27 8 -2.7441 -3.9778 5.3173 28 6 0.7789 -4.6967 2.0017 29 6 0.8506 -4.7073 0.4666 30 1 0.9848 -5.7086 0.0574 31 6 1.9381 -3.7216 0.0016 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5507 -2.0429 0.8841 34 1 -0.5469 -2.0644 -0.8988 35 1 -1.9663 -5.2871 0.9955 36 1 -2.1598 -3.5368 1.2948 37 1 -3.1711 -5.4348 2.3067 38 1 -3.0339 -6.2414 3.8913 39 1 -6.4418 -6.1239 2.7859 40 1 -4.9920 -7.1453 3.0888 41 1 -6.6918 -7.3861 5.1528 42 1 -6.5602 -5.1030 6.5972 43 1 -7.1251 -4.5465 4.9537 44 1 -3.8713 -6.8314 5.3115 45 1 -4.8221 -6.3379 6.7889 46 1 -4.2086 -3.7860 6.7779 47 1 -4.4643 -2.8137 5.3060 48 1 1.4079 -3.8979 2.3946 49 1 1.1150 -5.6568 2.3933 50 1 2.7818 -3.7443 0.6914 51 1 2.2706 -3.9804 -1.0037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048943358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:10 Heat of formation + Delta-G solvation = 46.364490 kcal Electronic energy + Delta-G solvation = -32699.734692 eV Core-core repulsion = 28602.898427 eV Total energy + Delta-G solvation = -4096.836265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44393 -40.21451 -38.46684 -37.09717 -34.99823 -33.93271 -32.30089 -30.28321 -30.09377 -29.65980 -28.93321 -25.99273 -25.61968 -25.53524 -24.56259 -23.85223 -22.52256 -20.70058 -20.07134 -19.55050 -19.43743 -18.99068 -17.25387 -16.88279 -16.69435 -16.13180 -16.06600 -15.83607 -15.27344 -14.86982 -14.63468 -14.55703 -14.05076 -13.78643 -13.70640 -13.29698 -13.17886 -13.09860 -12.92070 -12.55111 -12.41607 -12.17408 -12.11722 -11.96303 -11.73600 -11.60629 -11.34678 -11.28966 -10.98280 -10.90245 -10.89500 -10.78094 -10.52337 -10.40117 -10.12957 -10.10300 -9.83438 -9.71233 -9.62849 -9.50172 -8.88446 -8.60488 -8.31796 -6.83360 -5.72382 -3.05494 2.75040 2.82412 3.36747 3.41821 3.46327 3.47104 3.76620 3.89142 4.01857 4.19709 4.32118 4.50201 4.59762 4.62612 4.75382 4.80648 4.90526 4.96057 5.04017 5.19465 5.20570 5.26799 5.34344 5.35142 5.38693 5.42417 5.47923 5.51012 5.51436 5.55441 5.60573 5.64775 5.71358 5.73720 5.76500 5.79409 6.03262 6.17807 6.19042 6.21139 6.32579 6.46655 6.52191 6.55016 6.65618 6.80890 6.94937 7.54099 7.55422 7.74591 7.80013 8.26309 8.38090 9.22300 9.82629 10.45959 11.39249 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002975 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.416008 B = 9408.505425 C = 9942.707282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.189 3.811 11 C -0.126 4.126 12 H 0.094 0.906 13 C 0.109 3.891 14 N -0.602 5.602 15 C 0.537 3.463 16 O -0.524 6.524 17 C 0.083 3.917 18 H 0.094 0.906 19 C 0.007 3.993 20 N -0.468 5.468 21 C 0.034 3.966 22 C -0.144 4.144 23 C -0.107 4.107 24 C 0.009 3.991 25 C -0.174 4.174 26 C 0.092 3.908 27 O -0.352 6.352 28 C 0.124 3.876 29 C -0.112 4.112 30 H 0.089 0.911 31 C 0.145 3.855 32 H 0.253 0.747 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.038 0.962 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.314 -15.243 6.843 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.064 3.936 11 C -0.145 4.145 12 H 0.113 0.887 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.323 3.677 16 O -0.399 6.399 17 C 0.022 3.978 18 H 0.112 0.888 19 C -0.122 4.122 20 N -0.191 5.191 21 C -0.093 4.093 22 C -0.163 4.163 23 C -0.145 4.145 24 C -0.081 4.081 25 C -0.212 4.212 26 C 0.015 3.985 27 O -0.269 6.269 28 C 0.002 3.998 29 C -0.131 4.131 30 H 0.107 0.893 31 C 0.018 3.982 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.953 -14.558 7.167 21.401 hybrid contribution 0.514 0.170 0.213 0.582 sum -13.438 -14.388 7.380 21.026 Atomic orbital electron populations 1.69925 1.04852 1.25170 1.56996 1.24783 0.95739 0.97683 1.02053 0.86190 0.78477 0.83155 0.77892 1.21176 1.21585 1.21158 1.18987 0.90430 0.82297 1.44033 0.90442 1.44157 1.01478 0.99949 1.87220 1.21352 0.84607 0.86304 1.01362 1.23580 0.93568 1.00885 0.96511 0.88733 1.22152 0.94233 1.00419 0.84632 1.48046 1.09935 1.70930 1.04730 1.19526 0.89070 0.77420 0.81649 1.90705 1.57707 1.49290 1.42246 1.21776 0.92604 0.99145 0.84301 0.88815 1.23173 0.88427 0.97559 1.03028 1.67236 1.06748 1.31619 1.13541 1.23852 0.97920 0.91902 0.95648 1.24889 0.98049 0.98397 0.94930 1.23283 0.94274 0.95953 1.00966 1.23461 0.98146 0.96403 0.90119 1.24541 0.97748 0.98036 1.00899 1.21861 0.80456 0.96240 0.99979 1.88202 1.24996 1.93032 1.20707 1.21802 0.82302 1.00994 0.94652 1.22865 0.97418 0.99175 0.93670 0.89301 1.21229 0.93775 0.85714 0.97459 0.93701 0.93232 0.93712 0.92092 0.90295 0.87899 0.92517 0.88766 0.90989 0.87338 0.88037 0.90330 0.91076 0.88744 0.87651 0.91594 0.90463 0.92319 0.94396 0.96215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.25 55.49 0.57 -26.17 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.35 10.25 -15.06 -0.15 -6.51 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.96 3.38 -170.74 -0.58 -15.54 16 10 C 0.19 4.34 4.86 -2.62 -0.01 4.33 16 11 C -0.13 -2.10 4.16 -87.40 -0.36 -2.46 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.11 1.59 4.64 -3.30 -0.02 1.58 16 14 N -0.60 -10.25 3.31 -172.22 -0.57 -10.82 16 15 C 0.54 9.86 7.23 -10.98 -0.08 9.78 16 16 O -0.52 -11.62 16.80 -14.46 -0.24 -11.86 16 17 C 0.08 1.27 2.53 -27.73 -0.07 1.20 16 18 H 0.09 1.45 7.68 -51.93 -0.40 1.05 16 19 C 0.01 0.08 4.57 -3.74 -0.02 0.07 16 20 N -0.47 -5.11 6.03 -227.99 -1.37 -6.48 16 21 C 0.03 0.29 7.02 -0.23 0.00 0.29 16 22 C -0.14 -1.08 6.40 -98.02 -0.63 -1.70 16 23 C -0.11 -0.80 7.81 -30.35 -0.24 -1.04 16 24 C 0.01 0.09 1.59 -143.66 -0.23 -0.14 16 25 C -0.17 -1.61 7.01 -30.13 -0.21 -1.82 16 26 C 0.09 1.06 6.72 35.75 0.24 1.30 16 27 O -0.35 -5.59 9.99 -55.24 -0.55 -6.14 16 28 C 0.12 2.17 6.23 -3.60 -0.02 2.15 16 29 C -0.11 -1.81 4.03 -88.49 -0.36 -2.16 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 C 0.14 2.88 6.40 -3.40 -0.02 2.85 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 1.30 6.80 -51.93 -0.35 0.94 16 34 H 0.04 1.15 7.45 -51.93 -0.39 0.76 16 35 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 36 H 0.08 1.19 7.20 -51.93 -0.37 0.81 16 37 H 0.10 1.15 5.16 -51.93 -0.27 0.88 16 38 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.57 7.73 -51.93 -0.40 0.17 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.59 7.85 -51.93 -0.41 0.18 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.78 6.08 -51.93 -0.32 0.46 16 45 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 46 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.04 0.75 7.79 -51.92 -0.40 0.35 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -33.65 378.67 -12.45 -46.10 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.11 Total: 0.51 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.27 Total: 7.44 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -1.95 Total: -59.01 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.79 Total: -18.00 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.65 -12.45 -46.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048943358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.462 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds