Wall clock time and date at job start Wed Apr 1 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99715 * 2 1 4 4 H 1.48492 * 109.47264 * 239.99774 * 3 2 1 5 5 H 1.48498 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46576 * 119.99728 * 3 2 1 7 7 C 1.38808 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99785 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46656 * 125.33666 * 0.03918 * 9 7 2 11 11 C 1.55518 * 108.14157 * 180.65521 * 10 9 7 12 12 H 1.09005 * 113.05671 * 254.35872 * 11 10 9 13 13 C 1.54150 * 110.00277 * 126.68228 * 11 10 9 14 14 N 1.46764 * 106.58693 * 278.71889 * 13 11 10 15 15 C 1.34777 * 125.33611 * 161.45835 * 14 13 11 16 16 O 1.21283 * 119.99750 * 179.69509 * 15 14 13 17 17 C 1.50702 * 119.99928 * 359.97438 * 15 14 13 18 18 H 1.09003 * 109.19668 * 304.07273 * 17 15 14 19 19 C 1.53285 * 109.20613 * 63.37784 * 17 15 14 20 20 N 1.46789 * 108.50138 * 180.47259 * 19 17 15 21 21 C 1.49419 * 112.10016 * 193.76409 * 20 19 17 22 22 C 1.57034 * 99.32158 * 113.45751 * 21 20 19 23 23 C 1.56479 * 107.13411 * 40.31771 * 22 21 20 24 24 C 1.49516 * 107.60974 * 302.19769 * 20 19 17 25 25 C 1.54374 * 104.43004 * 288.57162 * 24 20 19 26 26 C 1.50167 * 114.92406 * 57.53207 * 24 20 19 27 27 O 1.42795 * 109.20472 * 184.72398 * 17 15 14 28 28 C 1.46658 * 109.32771 * 341.19811 * 14 13 11 29 29 C 1.53678 * 107.97304 * 0.95036 * 28 14 13 30 30 H 1.08996 * 112.77304 * 253.97859 * 29 28 14 31 31 C 1.46754 * 125.33231 * 180.02562 * 9 7 2 32 32 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.76814 * 300.30250 * 10 9 7 34 34 H 1.08996 * 109.76486 * 61.02386 * 10 9 7 35 35 H 1.08998 * 110.16289 * 159.39514 * 13 11 10 36 36 H 1.09000 * 109.96746 * 37.93840 * 13 11 10 37 37 H 1.08994 * 109.63554 * 300.18046 * 19 17 15 38 38 H 1.09000 * 109.62840 * 60.76870 * 19 17 15 39 39 H 1.08994 * 111.42856 * 230.97993 * 21 20 19 40 40 H 1.08998 * 111.42970 * 355.88269 * 21 20 19 41 41 H 1.09004 * 118.34877 * 180.88825 * 22 21 20 42 42 H 1.09000 * 114.70271 * 190.06354 * 23 22 21 43 43 H 1.09005 * 114.69810 * 55.82026 * 23 22 21 44 44 H 1.08994 * 114.72059 * 45.65857 * 25 24 20 45 45 H 1.09003 * 114.71541 * 179.97438 * 25 24 20 46 46 H 1.09002 * 109.69877 * 187.22177 * 26 24 20 47 47 H 1.08994 * 109.74001 * 66.63162 * 26 24 20 48 48 H 1.09004 * 109.76542 * 120.58153 * 28 14 13 49 49 H 1.09003 * 109.76953 * 241.30230 * 28 14 13 50 50 H 1.09007 * 110.02248 * 42.28792 * 31 9 7 51 51 H 1.09002 * 110.02137 * 280.90092 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1346 -2.5244 -0.0008 11 6 -0.4793 -4.0408 0.0166 12 1 -0.8357 -4.4087 -0.9456 13 6 -1.4423 -4.3493 1.1801 14 7 -0.6167 -4.4646 2.3880 15 6 -1.0709 -4.3767 3.6539 16 8 -0.3008 -4.4924 4.5837 17 6 -2.5364 -4.1408 3.9140 18 1 -2.8508 -3.2340 3.3972 19 6 -3.3414 -5.3302 3.3782 20 7 -4.7658 -5.0795 3.6291 21 6 -5.5940 -6.3095 3.4453 22 6 -6.0585 -6.5275 4.9294 23 6 -6.3894 -5.1170 5.5208 24 6 -4.9380 -4.8830 5.1012 25 6 -4.7316 -6.2892 5.7038 26 6 -4.1178 -3.7724 5.6917 27 8 -2.7441 -3.9778 5.3173 28 6 0.7789 -4.6967 2.0017 29 6 0.8506 -4.7073 0.4666 30 1 0.9848 -5.7086 0.0574 31 6 1.9381 -3.7216 0.0016 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5507 -2.0429 0.8841 34 1 -0.5469 -2.0644 -0.8988 35 1 -1.9663 -5.2871 0.9955 36 1 -2.1598 -3.5368 1.2948 37 1 -3.1711 -5.4348 2.3067 38 1 -3.0339 -6.2414 3.8913 39 1 -6.4418 -6.1239 2.7859 40 1 -4.9920 -7.1453 3.0888 41 1 -6.6918 -7.3861 5.1528 42 1 -6.5602 -5.1030 6.5972 43 1 -7.1251 -4.5465 4.9537 44 1 -3.8713 -6.8314 5.3115 45 1 -4.8221 -6.3379 6.7889 46 1 -4.2086 -3.7860 6.7779 47 1 -4.4643 -2.8137 5.3060 48 1 1.4079 -3.8979 2.3946 49 1 1.1150 -5.6568 2.3933 50 1 2.7818 -3.7443 0.6914 51 1 2.2706 -3.9804 -1.0037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048943358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:09 Heat of formation + Delta-G solvation = 22.315020 kcal Electronic energy + Delta-G solvation = -32700.777555 eV Core-core repulsion = 28602.898427 eV Total energy + Delta-G solvation = -4097.879128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.20414 -41.59633 -39.86188 -38.32911 -36.66442 -34.93415 -34.06450 -31.78801 -31.57052 -30.53561 -30.17833 -27.49129 -27.09150 -26.48389 -25.58753 -25.04862 -23.85903 -21.82250 -21.37040 -20.90071 -20.73458 -19.92562 -18.90433 -18.38510 -17.87799 -17.40287 -16.99989 -16.79639 -16.65134 -16.49653 -15.92292 -15.60485 -15.48483 -15.21899 -14.85571 -14.65325 -14.36987 -14.22815 -13.97990 -13.78234 -13.64699 -13.60997 -13.44558 -13.32561 -12.99281 -12.80588 -12.74634 -12.68486 -12.37454 -12.13513 -12.01986 -11.91902 -11.87229 -11.77828 -11.69502 -11.58409 -11.28319 -11.17443 -10.95457 -10.69721 -10.67832 -9.73483 -9.65847 -8.86362 -7.86242 -5.20050 1.34789 1.42605 1.45841 1.51558 1.58215 2.47876 2.59031 2.71427 3.20734 3.27112 3.31595 3.36163 3.42108 3.45853 3.58268 3.71206 3.74063 3.80856 3.88806 3.93159 3.98417 4.17843 4.23058 4.24806 4.39660 4.44125 4.51800 4.53477 4.58645 4.64177 4.68967 4.75696 4.78922 4.82280 4.84925 4.89490 4.90936 4.95795 5.01111 5.04461 5.07947 5.15746 5.19485 5.39036 5.45969 5.46308 5.67407 5.73089 5.79308 5.88512 6.22132 6.37031 6.96206 7.12225 7.81067 8.41202 9.23051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002975 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.416008 B = 9408.505425 C = 9942.707282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.196 3.804 11 C -0.111 4.111 12 H 0.132 0.868 13 C 0.111 3.889 14 N -0.602 5.602 15 C 0.529 3.471 16 O -0.574 6.574 17 C 0.090 3.910 18 H 0.084 0.916 19 C 0.021 3.979 20 N -0.482 5.482 21 C 0.031 3.969 22 C -0.128 4.128 23 C -0.095 4.095 24 C -0.006 4.006 25 C -0.177 4.177 26 C 0.084 3.916 27 O -0.384 6.384 28 C 0.123 3.877 29 C -0.091 4.091 30 H 0.142 0.858 31 C 0.136 3.864 32 H 0.245 0.755 33 H 0.005 0.995 34 H 0.010 0.990 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.062 0.938 48 H 0.031 0.969 49 H 0.080 0.920 50 H 0.032 0.968 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.082 -17.934 6.209 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.802 3.198 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.351 5.351 10 C 0.071 3.929 11 C -0.131 4.131 12 H 0.150 0.850 13 C -0.011 4.011 14 N -0.335 5.335 15 C 0.317 3.683 16 O -0.453 6.453 17 C 0.029 3.971 18 H 0.102 0.898 19 C -0.107 4.107 20 N -0.206 5.206 21 C -0.096 4.096 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.096 4.096 25 C -0.215 4.215 26 C 0.008 3.992 27 O -0.303 6.303 28 C 0.001 3.999 29 C -0.110 4.110 30 H 0.160 0.840 31 C 0.011 3.989 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.028 0.972 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.142 0.858 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.050 0.950 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.726 -17.281 6.497 24.252 hybrid contribution 1.127 1.054 0.441 1.605 sum -14.599 -16.226 6.938 22.903 Atomic orbital electron populations 1.70156 1.06018 1.25124 1.58216 1.25579 0.96646 1.00799 1.02682 0.85228 0.77251 0.79255 0.78073 1.19945 1.21931 1.21062 1.19362 0.90908 0.83926 1.43031 0.90367 1.44474 1.02608 1.01104 1.86963 1.21092 0.83526 0.90715 0.97561 1.23510 0.94589 0.95837 0.99126 0.85008 1.22318 0.93434 1.02657 0.82650 1.48161 1.10190 1.69953 1.05191 1.20184 0.90238 0.76457 0.81444 1.90662 1.59161 1.51727 1.43743 1.21679 0.90830 1.00168 0.84440 0.89836 1.23007 0.89055 0.95461 1.03224 1.67247 1.05835 1.33214 1.14267 1.23988 0.97895 0.90984 0.96734 1.24889 0.96932 0.99114 0.93725 1.23344 0.92026 0.95678 1.02210 1.23610 0.99983 0.96193 0.89833 1.24581 0.98145 0.97076 1.01708 1.22122 0.78845 0.96972 1.01250 1.88148 1.27858 1.93328 1.20962 1.21784 0.82067 1.00297 0.95772 1.22890 0.95262 1.00544 0.92319 0.84031 1.21467 0.94844 0.84448 0.98172 0.94538 0.97658 0.97219 0.87075 0.91087 0.86735 0.92966 0.87541 0.90372 0.84992 0.86066 0.90168 0.93130 0.87662 0.85820 0.91984 0.95057 0.90207 0.94951 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.25 21.65 0.22 -57.13 16 2 C -0.06 -3.71 5.48 84.86 0.47 -3.24 16 3 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.24 -13.87 10.25 84.03 0.86 -13.01 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -31.80 3.38 -694.08 -2.34 -34.15 16 10 C 0.20 9.26 4.86 87.22 0.42 9.69 16 11 C -0.11 -3.46 4.16 -8.71 -0.04 -3.50 16 12 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 13 C 0.11 3.04 4.64 86.72 0.40 3.44 16 14 N -0.60 -20.33 3.31 -817.16 -2.70 -23.03 16 15 C 0.53 19.98 7.23 87.66 0.63 20.61 16 16 O -0.57 -26.65 16.80 16.09 0.27 -26.38 16 17 C 0.09 2.82 2.53 29.94 0.08 2.89 16 18 H 0.08 2.72 7.68 -2.39 -0.02 2.70 16 19 C 0.02 0.50 4.57 86.42 0.39 0.89 16 20 N -0.48 -9.70 6.03 -875.23 -5.27 -14.97 16 21 C 0.03 0.43 7.02 87.23 0.61 1.04 16 22 C -0.13 -1.49 6.40 -15.59 -0.10 -1.59 16 23 C -0.10 -1.14 7.81 28.25 0.22 -0.92 16 24 C -0.01 -0.11 1.59 -5.74 -0.01 -0.12 16 25 C -0.18 -2.92 7.01 28.39 0.20 -2.72 16 26 C 0.08 1.93 6.72 71.07 0.48 2.41 16 27 O -0.38 -12.65 9.99 -129.85 -1.30 -13.94 16 28 C 0.12 4.22 6.23 86.58 0.54 4.76 16 29 C -0.09 -2.70 4.03 -9.41 -0.04 -2.74 16 30 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 31 C 0.14 5.29 6.40 86.66 0.55 5.84 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 33 H 0.01 0.29 6.80 -2.39 -0.02 0.27 16 34 H 0.01 0.51 7.45 -2.39 -0.02 0.49 16 35 H 0.11 2.05 6.67 -2.39 -0.02 2.04 16 36 H 0.07 2.10 7.20 -2.39 -0.02 2.09 16 37 H 0.11 2.27 5.16 -2.39 -0.01 2.25 16 38 H 0.05 1.26 5.97 -2.39 -0.01 1.24 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.01 7.73 -2.39 -0.02 0.99 16 41 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.12 0.98 7.85 -2.39 -0.02 0.96 16 43 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.05 1.05 6.08 -2.39 -0.01 1.04 16 45 H 0.11 1.48 7.85 -2.39 -0.02 1.46 16 46 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.03 1.35 7.48 -2.39 -0.02 1.34 16 49 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.03 1.29 7.79 -2.38 -0.02 1.27 16 51 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -79.73 378.67 -2.49 -82.21 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.93 Total: 14.52 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 5.68 Total: 23.75 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -10.10 Total: -129.27 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.03 Total: -40.32 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.73 -2.49 -82.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048943358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.529 kcal (2) G-P(sol) polarization free energy of solvation -79.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds