Wall clock time and date at job start Wed Apr 1 2020 04:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48506 * 109.47170 * 239.99448 * 3 2 1 5 5 H 1.48498 * 109.47371 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47261 * 119.99987 * 3 2 1 7 7 C 1.38811 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99557 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.46762 * 125.33543 * 0.02562 * 9 7 2 11 11 C 1.53978 * 106.67965 * 198.43345 * 10 9 7 12 12 H 1.09001 * 112.80399 * 208.64987 * 11 10 9 13 13 C 1.53675 * 109.29642 * 82.34105 * 11 10 9 14 14 N 1.46657 * 107.97161 * 233.06530 * 13 11 10 15 15 C 1.34774 * 125.33662 * 179.30406 * 14 13 11 16 16 O 1.21286 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00136 * 180.02562 * 15 14 13 18 18 H 1.08994 * 109.87713 * 59.30619 * 17 15 14 19 19 C 1.54325 * 109.88328 * 298.28632 * 17 15 14 20 20 C 1.55399 * 102.82875 * 218.48449 * 19 17 15 21 21 C 1.54908 * 101.66624 * 35.33596 * 20 19 17 22 22 N 1.47025 * 109.88362 * 180.32009 * 17 15 14 23 23 C 1.34781 * 125.64561 * 298.32526 * 22 17 15 24 24 O 1.21275 * 120.00037 * 359.97438 * 23 22 17 25 25 C 1.50701 * 119.99816 * 179.97438 * 23 22 17 26 26 C 1.52992 * 117.49964 * 248.62164 * 25 23 22 27 27 C 1.52997 * 117.50012 * 179.97438 * 25 23 22 28 28 C 1.46761 * 109.33283 * 359.29097 * 14 13 11 29 29 C 1.53953 * 106.67836 * 18.45155 * 28 14 13 30 30 H 1.09002 * 113.33694 * 209.06180 * 29 28 14 31 31 C 1.46658 * 125.33675 * 180.02562 * 9 7 2 32 32 H 0.96998 * 119.99994 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.01404 * 317.73188 * 10 9 7 34 34 H 1.08992 * 110.02017 * 79.07820 * 10 9 7 35 35 H 1.09002 * 109.76610 * 352.69649 * 13 11 10 36 36 H 1.08996 * 109.76986 * 113.42513 * 13 11 10 37 37 H 1.09003 * 110.71953 * 336.75590 * 19 17 15 38 38 H 1.08994 * 110.71912 * 100.02395 * 19 17 15 39 39 H 1.09008 * 110.88794 * 277.26586 * 20 19 17 40 40 H 1.08998 * 111.07489 * 153.49082 * 20 19 17 41 41 H 1.09008 * 110.36638 * 204.23678 * 21 20 19 42 42 H 1.08997 * 110.36425 * 81.91828 * 21 20 19 43 43 H 1.09005 * 115.54904 * 34.32827 * 25 23 22 44 44 H 1.08999 * 117.50191 * 359.97438 * 26 25 23 45 45 H 1.09005 * 117.50373 * 145.02130 * 26 25 23 46 46 H 1.08995 * 117.50037 * 214.98158 * 27 25 23 47 47 H 1.09008 * 117.49592 * 359.97438 * 27 25 23 48 48 H 1.08994 * 110.02361 * 137.75607 * 28 14 13 49 49 H 1.09007 * 110.01370 * 259.10441 * 28 14 13 50 50 H 1.09002 * 109.76683 * 298.93744 * 31 9 7 51 51 H 1.09004 * 109.76690 * 59.66290 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1356 -2.5245 -0.0005 11 6 -0.4458 -3.9586 0.4663 12 1 -1.3797 -4.3435 0.0566 13 6 -0.4022 -4.0136 2.0014 14 7 0.5097 -5.0945 2.3898 15 6 0.8157 -5.4389 3.6563 16 8 0.3214 -4.8356 4.5851 17 6 1.7720 -6.5738 3.9185 18 1 2.7367 -6.3592 3.4589 19 6 1.1981 -7.8868 3.3456 20 6 1.6009 -8.9365 4.4184 21 6 1.4730 -8.1141 5.7249 22 7 1.9393 -6.7622 5.3670 23 6 2.4372 -5.8501 6.2254 24 8 2.7927 -4.7646 5.8179 25 6 2.5519 -6.1791 7.6916 26 6 1.6314 -5.4309 8.6577 27 6 3.1255 -5.1021 8.6146 28 6 1.0368 -5.7426 1.1831 29 6 0.8074 -4.7619 0.0188 30 1 0.6748 -5.2571 -0.9432 31 6 1.9377 -3.7208 0.0016 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5781 -1.8042 0.6877 34 1 -0.5244 -2.3665 -1.0064 35 1 -0.0374 -3.0645 2.3941 36 1 -1.3999 -4.2148 2.3916 37 1 0.1136 -7.8261 3.2542 38 1 1.6548 -8.1200 2.3838 39 1 2.6268 -9.2727 4.2672 40 1 0.9115 -9.7807 4.4190 41 1 2.1052 -8.5395 6.5044 42 1 0.4341 -8.0826 6.0531 43 1 2.7878 -7.2179 7.9232 44 1 0.9430 -4.7003 8.2330 45 1 1.2612 -5.9773 9.5253 46 1 3.7378 -5.4323 9.4536 47 1 3.4202 -4.1556 8.1612 48 1 2.1023 -5.9397 1.3004 49 1 0.5034 -6.6749 0.9971 50 1 2.5433 -3.8491 -0.8956 51 1 2.5617 -3.8392 0.8875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049099981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:00 Heat of formation + Delta-G solvation = 2.972812 kcal Electronic energy + Delta-G solvation = -32345.036256 eV Core-core repulsion = 28246.318387 eV Total energy + Delta-G solvation = -4098.717869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86068 -39.70500 -38.32628 -37.17975 -35.96052 -34.89014 -32.36009 -31.73682 -30.60865 -29.69356 -29.26105 -25.65702 -25.41806 -25.28856 -23.48146 -22.59231 -22.47459 -21.56203 -20.04282 -19.89538 -19.32462 -18.50550 -17.63078 -17.47557 -16.71304 -16.11103 -15.71394 -15.52610 -15.13889 -14.70256 -14.62683 -14.33804 -14.01959 -13.72362 -13.49359 -13.39596 -13.12361 -12.97791 -12.71439 -12.63506 -12.25002 -12.08419 -11.93801 -11.75161 -11.69572 -11.66168 -11.47913 -11.29839 -11.20207 -10.91558 -10.75216 -10.72650 -10.63606 -10.38341 -10.10559 -9.95055 -9.82289 -9.78570 -9.67357 -9.56822 -8.69385 -8.57522 -8.23088 -6.79332 -5.64338 -3.02512 2.49312 2.70818 2.88927 3.38088 3.45183 3.49542 3.50785 3.76845 4.11335 4.17954 4.50782 4.52661 4.56470 4.62183 4.71582 4.75881 4.80707 4.91476 4.93632 5.09820 5.14954 5.25794 5.30603 5.38612 5.45346 5.47741 5.51300 5.54352 5.55720 5.57528 5.66384 5.75320 5.79852 5.83771 5.85014 5.96943 6.01911 6.10140 6.17963 6.35616 6.45904 6.64861 6.71097 6.79622 6.86448 7.42096 7.47631 7.66106 7.84507 7.85967 8.22689 8.36469 8.48917 9.26553 9.87115 10.49759 11.42394 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003304 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.623060 B = 8473.462863 C = 9980.793092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.170 3.830 11 C -0.123 4.123 12 H 0.087 0.913 13 C 0.124 3.876 14 N -0.606 5.606 15 C 0.520 3.480 16 O -0.525 6.525 17 C 0.125 3.875 18 H 0.099 0.901 19 C -0.122 4.122 20 C -0.131 4.131 21 C 0.102 3.898 22 N -0.602 5.602 23 C 0.563 3.437 24 O -0.516 6.516 25 C -0.188 4.188 26 C -0.150 4.150 27 C -0.149 4.149 28 C 0.110 3.890 29 C -0.109 4.109 30 H 0.097 0.903 31 C 0.144 3.856 32 H 0.253 0.747 33 H 0.096 0.904 34 H 0.019 0.981 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.022 0.978 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -23.549 10.531 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.045 3.955 11 C -0.143 4.143 12 H 0.106 0.894 13 C 0.002 3.998 14 N -0.340 5.340 15 C 0.306 3.694 16 O -0.401 6.401 17 C 0.017 3.983 18 H 0.117 0.883 19 C -0.160 4.160 20 C -0.169 4.169 21 C -0.021 4.021 22 N -0.338 5.338 23 C 0.352 3.648 24 O -0.390 6.390 25 C -0.210 4.210 26 C -0.187 4.187 27 C -0.187 4.187 28 C -0.014 4.014 29 C -0.128 4.128 30 H 0.115 0.885 31 C 0.018 3.982 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.127 0.873 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.305 -22.323 10.977 24.911 hybrid contribution 0.449 0.754 -0.204 0.901 sum 1.754 -21.569 10.774 24.174 Atomic orbital electron populations 1.69843 1.04850 1.25013 1.57420 1.24769 0.95739 0.97693 1.02191 0.86164 0.78459 0.83069 0.77895 1.21216 1.21544 1.21122 1.19001 0.90471 0.82394 1.43442 0.90576 1.44172 1.01583 0.99843 1.86927 1.21468 0.84871 0.89605 0.99599 1.23199 0.97025 1.00587 0.93463 0.89434 1.21844 0.92230 0.90830 0.94913 1.48170 1.46221 1.34905 1.04738 1.20295 0.82520 0.84971 0.81587 1.90694 1.53210 1.53791 1.42383 1.21415 0.99151 0.94795 0.82939 0.88319 1.22717 1.02115 0.91846 0.99350 1.22844 1.02884 0.97526 0.93695 1.22336 1.00144 0.81777 0.97844 1.48070 1.63871 1.15316 1.06502 1.19246 0.76395 0.82943 0.86259 1.90768 1.48042 1.21963 1.78261 1.22103 1.09783 0.99270 0.89795 1.22946 0.94012 1.02363 0.99412 1.22974 0.96141 0.99630 0.99912 1.22042 0.98641 0.95636 0.85031 1.22830 0.97201 0.95798 0.96995 0.88452 1.21138 0.93403 0.85778 0.97880 0.93676 0.88575 0.96272 0.90341 0.92644 0.89932 0.88803 0.90111 0.89331 0.90223 0.91168 0.86170 0.87912 0.87922 0.87984 0.87326 0.91255 0.91864 0.96045 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.43 10.16 55.49 0.56 -26.87 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.22 -6.46 10.25 -15.06 -0.15 -6.62 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.53 3.37 -171.88 -0.58 -16.11 16 10 C 0.17 4.09 4.84 -3.39 -0.02 4.08 16 11 C -0.12 -2.24 4.09 -88.47 -0.36 -2.60 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.12 2.40 6.24 -3.61 -0.02 2.38 16 14 N -0.61 -10.37 3.31 -172.35 -0.57 -10.94 16 15 C 0.52 9.35 6.72 -10.99 -0.07 9.27 16 16 O -0.53 -11.71 15.36 -8.49 -0.13 -11.84 16 17 C 0.12 1.66 2.61 -68.10 -0.18 1.48 16 18 H 0.10 1.35 7.86 -51.93 -0.41 0.94 16 19 C -0.12 -1.02 5.18 -24.76 -0.13 -1.14 16 20 C -0.13 -0.78 7.09 -24.45 -0.17 -0.95 16 21 C 0.10 0.82 6.69 -2.53 -0.02 0.80 16 22 N -0.60 -7.86 2.84 -164.33 -0.47 -8.32 16 23 C 0.56 8.78 6.80 -10.98 -0.07 8.71 16 24 O -0.52 -10.76 15.54 -8.48 -0.13 -10.89 16 25 C -0.19 -2.10 5.53 -91.78 -0.51 -2.60 16 26 C -0.15 -1.57 10.24 -26.71 -0.27 -1.84 16 27 C -0.15 -1.59 10.05 -26.71 -0.27 -1.86 16 28 C 0.11 1.48 4.67 -3.40 -0.02 1.46 16 29 C -0.11 -1.75 4.09 -88.48 -0.36 -2.12 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 31 C 0.14 3.00 6.62 -3.60 -0.02 2.98 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.10 2.65 5.83 -51.92 -0.30 2.34 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.89 7.47 -51.93 -0.39 1.51 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 38 H 0.09 0.60 7.63 -51.93 -0.40 0.20 16 39 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.46 7.00 -51.92 -0.36 0.10 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.12 0.94 7.07 -51.93 -0.37 0.58 16 44 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.11 1.42 7.67 -51.92 -0.40 1.03 16 48 H 0.07 0.86 7.24 -51.93 -0.38 0.48 16 49 H 0.06 0.65 7.63 -51.93 -0.40 0.25 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.02 0.48 7.47 -51.93 -0.39 0.10 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -37.94 395.03 -11.52 -49.46 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.39 Total: 0.56 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -2.75 Total: 11.09 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.05 Total: -62.24 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.26 Total: -22.73 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.94 -11.52 -49.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.431 kcal (2) G-P(sol) polarization free energy of solvation -37.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds