Wall clock time and date at job start Wed Apr 1 2020 04:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47174 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47145 * 119.99349 * 3 2 1 7 7 C 1.38808 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 160.41088 * 7 2 1 9 9 N 1.36942 * 120.00262 * 340.41571 * 7 2 1 10 10 C 1.50165 * 120.53602 * 336.69976 * 9 7 2 11 11 C 1.46242 * 107.52897 * 109.56933 * 10 9 7 12 12 C 1.52520 * 114.28022 * 58.40892 * 11 10 9 13 13 C 1.50135 * 105.41566 * 270.59303 * 12 11 10 14 14 H 1.08996 * 109.20366 * 337.38370 * 13 12 11 15 15 N 1.46503 * 109.20831 * 218.02564 * 13 12 11 16 16 C 1.34779 * 119.99813 * 154.99751 * 15 13 12 17 17 O 1.21605 * 119.99845 * 0.02562 * 16 15 13 18 18 C 1.47400 * 119.99649 * 179.97438 * 16 15 13 19 19 C 1.37356 * 128.56463 * 359.68441 * 18 16 15 20 20 O 1.33493 * 106.34011 * 179.90624 * 19 18 16 21 21 N 1.20663 * 113.15444 * 0.38951 * 20 19 18 22 22 C 1.30016 * 112.30217 * 359.75110 * 21 20 19 23 23 C 1.50701 * 127.33405 * 179.97438 * 22 21 20 24 24 C 1.54268 * 110.03093 * 57.93763 * 23 22 21 25 25 C 1.54956 * 104.16203 * 217.13302 * 24 23 22 26 26 C 1.54891 * 102.77915 * 37.88916 * 25 24 23 27 27 C 1.53869 * 110.03512 * 300.72118 * 23 22 21 28 28 C 1.54845 * 110.81461 * 97.68163 * 13 12 11 29 29 C 1.43436 * 120.53662 * 156.68239 * 9 7 2 30 30 H 0.96998 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.84834 * 350.06299 * 10 9 7 32 32 H 1.08998 * 109.89746 * 229.10727 * 10 9 7 33 33 H 1.09002 * 108.52355 * 297.15888 * 11 10 9 34 34 H 1.09006 * 108.39610 * 179.56138 * 11 10 9 35 35 H 1.08999 * 110.25279 * 151.62032 * 12 11 10 36 36 H 1.08999 * 110.24998 * 29.56225 * 12 11 10 37 37 H 0.97001 * 119.99582 * 334.99939 * 15 13 12 38 38 H 1.07996 * 126.83473 * 0.02562 * 19 18 16 39 39 H 1.08999 * 110.01740 * 179.32723 * 23 22 21 40 40 H 1.09004 * 110.48939 * 335.78372 * 24 23 22 41 41 H 1.09003 * 110.48431 * 98.42302 * 24 23 22 42 42 H 1.08999 * 110.71839 * 279.57398 * 25 24 23 43 43 H 1.08998 * 110.92611 * 156.29517 * 25 24 23 44 44 H 1.08997 * 110.49111 * 203.40844 * 26 25 24 45 45 H 1.09001 * 110.48698 * 80.75488 * 26 25 24 46 46 H 1.09001 * 110.02987 * 238.56856 * 27 23 22 47 47 H 1.08997 * 110.03328 * 0.02562 * 27 23 22 48 48 H 1.09001 * 109.35830 * 81.33664 * 28 13 12 49 49 H 1.08999 * 109.35617 * 200.92837 * 28 13 12 50 50 H 1.09001 * 108.16174 * 33.30140 * 29 9 7 51 51 H 1.08996 * 108.15790 * 150.08115 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0434 -1.2294 -0.3130 9 7 1.3850 -2.3536 0.3986 10 6 0.1861 -2.2980 1.3011 11 6 -0.9806 -2.6832 0.5080 12 6 -0.8830 -4.0706 -0.1181 13 6 -0.2323 -3.8604 -1.4547 14 1 -0.3826 -2.8273 -1.7681 15 7 -0.8480 -4.7563 -2.4368 16 6 -0.8243 -4.4390 -3.7465 17 8 -0.2915 -3.4091 -4.1129 18 6 -1.4433 -5.3407 -4.7345 19 6 -2.0800 -6.5387 -4.5197 20 8 -2.4705 -6.9768 -5.7188 21 7 -2.1621 -6.2345 -6.6187 22 6 -1.5262 -5.1826 -6.1947 23 6 -0.9881 -4.0444 -7.0229 24 6 -2.1304 -3.3898 -7.8270 25 6 -1.4776 -3.0238 -9.1838 26 6 -0.5338 -4.2239 -9.4447 27 6 0.0269 -4.5742 -8.0508 28 6 1.2863 -4.1533 -1.3796 29 6 1.8644 -3.6323 -0.0402 30 1 -0.4850 0.8400 -0.0004 31 1 0.0564 -1.2851 1.6822 32 1 0.3146 -2.9921 2.1317 33 1 -1.1140 -1.9520 -0.2893 34 1 -1.8592 -2.6552 1.1525 35 1 -1.8776 -4.4977 -0.2458 36 1 -0.2679 -4.7221 0.5025 37 1 -1.2728 -5.5779 -2.1444 38 1 -2.2355 -7.0280 -3.5696 39 1 -0.5144 -3.3047 -6.3774 40 1 -2.9467 -4.0969 -7.9749 41 1 -2.4882 -2.4933 -7.3207 42 1 -0.9101 -2.0969 -9.1011 43 1 -2.2294 -2.9459 -9.9691 44 1 0.2727 -3.9356 -10.1188 45 1 -1.0918 -5.0661 -9.8540 46 1 0.9930 -4.0911 -7.9047 47 1 0.1299 -5.6547 -7.9510 48 1 1.4508 -5.2285 -1.4502 49 1 1.7914 -3.6573 -2.2084 50 1 2.9484 -3.5734 -0.1382 51 1 1.6347 -4.3649 0.7335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052439746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:14 Heat of formation + Delta-G solvation = 39.111962 kcal Electronic energy + Delta-G solvation = -31728.649660 eV Core-core repulsion = 27631.498902 eV Total energy + Delta-G solvation = -4097.150758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.01439 -39.60917 -38.37455 -37.60996 -34.68323 -33.78842 -32.64456 -31.81131 -31.54737 -29.84393 -28.82605 -28.79955 -26.27864 -24.91250 -23.90967 -22.75695 -22.60113 -20.84404 -20.61752 -19.97126 -19.73957 -19.11736 -18.08655 -17.75212 -16.71001 -16.62040 -15.85431 -15.63755 -15.24835 -15.07265 -14.56720 -14.44513 -13.91368 -13.78916 -13.65566 -13.48010 -13.37531 -13.19230 -12.51046 -12.26244 -12.01349 -11.91409 -11.84221 -11.49556 -11.31038 -11.24676 -11.23070 -11.16584 -10.80109 -10.77309 -10.69379 -10.63533 -10.40317 -10.26564 -10.07245 -9.90469 -9.83274 -9.78187 -9.59746 -9.50729 -9.36625 -8.64376 -8.36972 -6.70027 -5.76535 -3.15246 0.99402 1.71927 2.83394 3.38044 3.39741 3.43001 3.48302 3.49901 3.90238 4.13232 4.51898 4.54690 4.55230 4.74234 4.83498 5.01022 5.19704 5.31420 5.33864 5.39241 5.39382 5.43034 5.52958 5.54285 5.55202 5.68710 5.71887 5.77054 5.83148 5.86379 5.98603 6.00560 6.07497 6.19586 6.23740 6.25856 6.33241 6.37942 6.45402 6.67621 6.82925 6.87465 6.91655 6.99798 7.09558 7.19921 7.58329 7.74297 7.77601 7.97172 8.09954 8.44322 8.45382 9.21798 9.89153 10.41107 11.31282 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003025 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.190748 B = 9253.705899 C =10749.540728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.157 3.843 14 H 0.105 0.895 15 N -0.720 5.720 16 C 0.585 3.415 17 O -0.517 6.517 18 C -0.242 4.242 19 C -0.018 4.018 20 O 0.094 5.906 21 N -0.358 5.358 22 C 0.081 3.919 23 C -0.025 4.025 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.151 4.151 29 C 0.162 3.838 30 H 0.253 0.747 31 H 0.091 0.909 32 H 0.006 0.994 33 H 0.103 0.897 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.388 0.612 38 H 0.224 0.776 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.057 0.943 50 H 0.034 0.966 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -14.058 -10.008 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.055 3.945 14 H 0.123 0.877 15 N -0.370 5.370 16 C 0.370 3.630 17 O -0.393 6.393 18 C -0.250 4.250 19 C -0.100 4.100 20 O 0.034 5.966 21 N -0.064 5.064 22 C -0.082 4.082 23 C -0.044 4.044 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.194 4.194 29 C 0.032 3.968 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.024 0.976 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.222 0.778 38 H 0.240 0.760 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.213 -13.577 -11.416 18.795 hybrid contribution 0.399 0.656 0.799 1.108 sum -5.814 -12.920 -10.617 17.705 Atomic orbital electron populations 1.69940 1.05076 1.25346 1.54148 1.24869 0.95218 0.98178 1.01056 0.86403 0.78999 0.83592 0.78005 1.21024 1.21739 1.21232 1.19163 0.93672 0.85329 1.39837 0.91536 1.44260 1.33724 1.00883 1.52040 1.20166 0.85242 1.00596 0.89884 1.20936 0.98520 0.94946 1.02459 1.21369 0.98687 0.99906 0.95945 1.21345 0.92150 0.94813 0.86235 0.87719 1.46387 1.58827 1.25608 1.06195 1.16879 0.79563 0.84781 0.81799 1.90832 1.44202 1.24915 1.79329 1.22620 1.08977 0.98445 0.94939 1.26349 0.96874 0.94968 0.91835 1.84566 1.59189 1.41112 1.11710 1.73605 1.16951 1.04072 1.11763 1.24782 0.97209 0.95610 0.90565 1.20521 0.96029 0.92447 0.95416 1.22447 0.96961 1.00469 0.95391 1.22499 0.98566 0.98401 0.96618 1.22354 0.98880 0.98167 0.96580 1.22184 0.98288 1.00974 0.93718 1.23319 0.95152 0.98525 1.02357 1.20352 0.96416 0.88208 0.91794 0.93712 0.89119 0.97571 0.87845 0.95138 0.92832 0.91778 0.77847 0.76008 0.86477 0.91381 0.90953 0.91071 0.91437 0.91523 0.91626 0.90895 0.91850 0.93707 0.92432 0.94785 0.95331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 9.43 55.49 0.52 -24.23 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.68 29.60 -169.99 -5.03 16.65 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.73 9.63 -15.06 -0.14 -6.88 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.04 2.60 -175.08 -0.46 -14.50 16 10 C 0.16 3.68 5.24 -5.20 -0.03 3.65 16 11 C -0.13 -2.63 5.02 -30.19 -0.15 -2.78 16 12 C -0.12 -1.99 5.34 -28.40 -0.15 -2.15 16 13 C 0.16 2.84 2.22 -68.38 -0.15 2.69 16 14 H 0.10 2.48 6.27 -51.93 -0.33 2.16 16 15 N -0.72 -10.37 4.97 -55.33 -0.28 -10.64 16 16 C 0.58 9.55 7.76 -12.53 -0.10 9.45 16 17 O -0.52 -10.78 14.94 5.27 0.08 -10.70 16 18 C -0.24 -3.21 6.47 -102.90 -0.67 -3.88 16 19 C -0.02 -0.17 11.85 30.41 0.36 0.19 16 20 O 0.09 1.03 11.06 18.65 0.21 1.23 16 21 N -0.36 -4.65 11.85 34.78 0.41 -4.23 16 22 C 0.08 1.11 5.78 -79.77 -0.46 0.65 16 23 C -0.02 -0.33 3.36 -90.65 -0.30 -0.64 16 24 C -0.11 -1.34 6.36 -25.03 -0.16 -1.50 16 25 C -0.12 -1.21 6.91 -24.70 -0.17 -1.38 16 26 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 27 C -0.11 -1.32 6.45 -25.61 -0.17 -1.48 16 28 C -0.15 -2.84 5.98 -24.75 -0.15 -2.99 16 29 C 0.16 3.30 5.18 -4.66 -0.02 3.27 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.09 2.29 6.05 -51.93 -0.31 1.98 16 32 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 33 H 0.10 2.51 5.29 -51.93 -0.27 2.24 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 36 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 37 H 0.39 3.97 7.66 -40.82 -0.31 3.66 16 38 H 0.22 0.93 7.68 -52.49 -0.40 0.53 16 39 H 0.12 1.83 6.33 -51.93 -0.33 1.51 16 40 H 0.07 0.81 7.72 -51.93 -0.40 0.41 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 48 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 51 H 0.03 0.52 6.88 -51.93 -0.36 0.17 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -30.99 392.30 -9.39 -40.38 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.04 Total: 5.19 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.72 Total: -5.08 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.20 Total: -53.60 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.29 Total: -9.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.99 -9.39 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052439746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds