Wall clock time and date at job start Wed Apr 1 2020 04:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47174 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47145 * 119.99349 * 3 2 1 7 7 C 1.38808 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 160.41088 * 7 2 1 9 9 N 1.36942 * 120.00262 * 340.41571 * 7 2 1 10 10 C 1.50165 * 120.53602 * 336.69976 * 9 7 2 11 11 C 1.46242 * 107.52897 * 109.56933 * 10 9 7 12 12 C 1.52520 * 114.28022 * 58.40892 * 11 10 9 13 13 C 1.50135 * 105.41566 * 270.59303 * 12 11 10 14 14 H 1.08996 * 109.20366 * 337.38370 * 13 12 11 15 15 N 1.46503 * 109.20831 * 218.02564 * 13 12 11 16 16 C 1.34779 * 119.99813 * 154.99751 * 15 13 12 17 17 O 1.21605 * 119.99845 * 0.02562 * 16 15 13 18 18 C 1.47400 * 119.99649 * 179.97438 * 16 15 13 19 19 C 1.37356 * 128.56463 * 359.68441 * 18 16 15 20 20 O 1.33493 * 106.34011 * 179.90624 * 19 18 16 21 21 N 1.20663 * 113.15444 * 0.38951 * 20 19 18 22 22 C 1.30016 * 112.30217 * 359.75110 * 21 20 19 23 23 C 1.50701 * 127.33405 * 179.97438 * 22 21 20 24 24 C 1.54268 * 110.03093 * 57.93763 * 23 22 21 25 25 C 1.54956 * 104.16203 * 217.13302 * 24 23 22 26 26 C 1.54891 * 102.77915 * 37.88916 * 25 24 23 27 27 C 1.53869 * 110.03512 * 300.72118 * 23 22 21 28 28 C 1.54845 * 110.81461 * 97.68163 * 13 12 11 29 29 C 1.43436 * 120.53662 * 156.68239 * 9 7 2 30 30 H 0.96998 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.84834 * 350.06299 * 10 9 7 32 32 H 1.08998 * 109.89746 * 229.10727 * 10 9 7 33 33 H 1.09002 * 108.52355 * 297.15888 * 11 10 9 34 34 H 1.09006 * 108.39610 * 179.56138 * 11 10 9 35 35 H 1.08999 * 110.25279 * 151.62032 * 12 11 10 36 36 H 1.08999 * 110.24998 * 29.56225 * 12 11 10 37 37 H 0.97001 * 119.99582 * 334.99939 * 15 13 12 38 38 H 1.07996 * 126.83473 * 0.02562 * 19 18 16 39 39 H 1.08999 * 110.01740 * 179.32723 * 23 22 21 40 40 H 1.09004 * 110.48939 * 335.78372 * 24 23 22 41 41 H 1.09003 * 110.48431 * 98.42302 * 24 23 22 42 42 H 1.08999 * 110.71839 * 279.57398 * 25 24 23 43 43 H 1.08998 * 110.92611 * 156.29517 * 25 24 23 44 44 H 1.08997 * 110.49111 * 203.40844 * 26 25 24 45 45 H 1.09001 * 110.48698 * 80.75488 * 26 25 24 46 46 H 1.09001 * 110.02987 * 238.56856 * 27 23 22 47 47 H 1.08997 * 110.03328 * 0.02562 * 27 23 22 48 48 H 1.09001 * 109.35830 * 81.33664 * 28 13 12 49 49 H 1.08999 * 109.35617 * 200.92837 * 28 13 12 50 50 H 1.09001 * 108.16174 * 33.30140 * 29 9 7 51 51 H 1.08996 * 108.15790 * 150.08115 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0434 -1.2294 -0.3130 9 7 1.3850 -2.3536 0.3986 10 6 0.1861 -2.2980 1.3011 11 6 -0.9806 -2.6832 0.5080 12 6 -0.8830 -4.0706 -0.1181 13 6 -0.2323 -3.8604 -1.4547 14 1 -0.3826 -2.8273 -1.7681 15 7 -0.8480 -4.7563 -2.4368 16 6 -0.8243 -4.4390 -3.7465 17 8 -0.2915 -3.4091 -4.1129 18 6 -1.4433 -5.3407 -4.7345 19 6 -2.0800 -6.5387 -4.5197 20 8 -2.4705 -6.9768 -5.7188 21 7 -2.1621 -6.2345 -6.6187 22 6 -1.5262 -5.1826 -6.1947 23 6 -0.9881 -4.0444 -7.0229 24 6 -2.1304 -3.3898 -7.8270 25 6 -1.4776 -3.0238 -9.1838 26 6 -0.5338 -4.2239 -9.4447 27 6 0.0269 -4.5742 -8.0508 28 6 1.2863 -4.1533 -1.3796 29 6 1.8644 -3.6323 -0.0402 30 1 -0.4850 0.8400 -0.0004 31 1 0.0564 -1.2851 1.6822 32 1 0.3146 -2.9921 2.1317 33 1 -1.1140 -1.9520 -0.2893 34 1 -1.8592 -2.6552 1.1525 35 1 -1.8776 -4.4977 -0.2458 36 1 -0.2679 -4.7221 0.5025 37 1 -1.2728 -5.5779 -2.1444 38 1 -2.2355 -7.0280 -3.5696 39 1 -0.5144 -3.3047 -6.3774 40 1 -2.9467 -4.0969 -7.9749 41 1 -2.4882 -2.4933 -7.3207 42 1 -0.9101 -2.0969 -9.1011 43 1 -2.2294 -2.9459 -9.9691 44 1 0.2727 -3.9356 -10.1188 45 1 -1.0918 -5.0661 -9.8540 46 1 0.9930 -4.0911 -7.9047 47 1 0.1299 -5.6547 -7.9510 48 1 1.4508 -5.2285 -1.4502 49 1 1.7914 -3.6573 -2.2084 50 1 2.9484 -3.5734 -0.1382 51 1 1.6347 -4.3649 0.7335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052439746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:12 Heat of formation + Delta-G solvation = 20.544666 kcal Electronic energy + Delta-G solvation = -31729.454798 eV Core-core repulsion = 27631.498902 eV Total energy + Delta-G solvation = -4097.955896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.97810 -40.97419 -39.42352 -39.06564 -36.27253 -34.80191 -34.11590 -33.29501 -33.04459 -31.42873 -29.74707 -29.73344 -28.01489 -26.17569 -25.60095 -24.27710 -23.54749 -22.09980 -21.65706 -21.38594 -20.87219 -20.52608 -19.17570 -18.70536 -18.57410 -17.68732 -17.09719 -16.91931 -16.72621 -16.28735 -16.14045 -15.70014 -15.55399 -15.30707 -14.97809 -14.58726 -14.48896 -14.37906 -14.04915 -13.89934 -13.48433 -13.21357 -13.12553 -12.95479 -12.81437 -12.66168 -12.39108 -12.21687 -12.15272 -12.11200 -12.03088 -11.95395 -11.77167 -11.68707 -11.58309 -11.53164 -11.17959 -11.10719 -10.97712 -10.90173 -10.75734 -10.42601 -9.96626 -8.62188 -7.82060 -5.21455 0.09822 0.70845 1.46565 1.47085 1.53621 1.91185 2.18004 2.32459 2.54823 2.92394 3.20723 3.31191 3.61985 3.63296 3.64894 3.86864 3.89054 3.99617 4.05734 4.19110 4.36347 4.38297 4.39829 4.48641 4.50419 4.53399 4.65594 4.66363 4.71632 4.76545 4.79569 4.88715 4.91630 4.92552 4.96095 5.09247 5.13868 5.17029 5.20715 5.27816 5.32179 5.34005 5.38465 5.43244 5.53866 5.68064 5.68799 5.81181 6.23647 6.44235 6.58343 7.20480 7.21236 7.27159 7.95237 8.42144 9.21747 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003025 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.190748 B = 9253.705899 C =10749.540728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.041 4.041 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.166 3.834 11 C -0.124 4.124 12 C -0.105 4.105 13 C 0.171 3.829 14 H 0.041 0.959 15 N -0.701 5.701 16 C 0.585 3.415 17 O -0.577 6.577 18 C -0.282 4.282 19 C 0.034 3.966 20 O 0.103 5.897 21 N -0.368 5.368 22 C 0.064 3.936 23 C -0.030 4.030 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.141 4.141 29 C 0.156 3.844 30 H 0.245 0.755 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.282 0.718 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.015 0.985 50 H 0.025 0.975 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -17.615 -9.570 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.237 4.237 3 Si 0.782 3.218 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.394 4.394 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.043 3.957 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.067 3.933 14 H 0.059 0.941 15 N -0.353 5.353 16 C 0.372 3.628 17 O -0.457 6.457 18 C -0.290 4.290 19 C -0.048 4.048 20 O 0.044 5.956 21 N -0.074 5.074 22 C -0.099 4.099 23 C -0.050 4.050 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.183 4.183 29 C 0.028 3.972 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.297 0.703 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.034 0.966 50 H 0.043 0.957 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.402 -17.198 -10.970 21.700 hybrid contribution 0.762 1.693 0.698 1.984 sum -6.641 -15.504 -10.271 19.748 Atomic orbital electron populations 1.70122 1.05788 1.25074 1.54978 1.25470 0.95989 1.00545 1.01690 0.85580 0.77840 0.80583 0.77838 1.21419 1.22010 1.20435 1.19337 0.93542 0.86983 1.39502 0.92595 1.44420 1.34145 1.01237 1.52622 1.20132 0.85587 0.99332 0.90654 1.20750 0.98214 0.96320 1.01078 1.21278 1.00998 0.97851 0.94169 1.20841 0.92256 0.92368 0.87878 0.94103 1.46020 1.58293 1.25972 1.05008 1.17277 0.78620 0.84314 0.82585 1.90818 1.46866 1.27675 1.80315 1.22300 1.12256 1.00304 0.94091 1.27255 0.92327 0.92496 0.92704 1.84556 1.58487 1.40422 1.12136 1.73607 1.17246 1.03951 1.12554 1.24876 0.97778 0.95989 0.91210 1.20457 0.96840 0.92185 0.95509 1.22421 0.96558 0.99829 0.96249 1.22509 0.98905 0.98410 0.95886 1.22338 0.99265 0.98219 0.95499 1.22168 0.97751 1.00468 0.94585 1.23180 0.95179 1.00145 0.99762 1.20497 0.95919 0.87469 0.93364 0.94530 0.92770 0.94774 0.92393 0.93510 0.89162 0.89498 0.74679 0.70255 0.89899 0.91394 0.92022 0.91159 0.89614 0.89971 0.91065 0.91459 0.92244 0.89898 0.96606 0.95690 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 9.43 21.65 0.20 -52.43 16 2 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 3 Si 0.95 46.19 29.60 68.60 2.03 48.22 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.26 -14.66 9.63 84.03 0.81 -13.85 16 8 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 9 N -0.60 -29.10 2.60 -707.84 -1.84 -30.95 16 10 C 0.17 7.39 5.24 83.58 0.44 7.82 16 11 C -0.12 -4.97 5.02 28.35 0.14 -4.82 16 12 C -0.11 -3.14 5.34 29.51 0.16 -2.98 16 13 C 0.17 6.08 2.22 44.70 0.10 6.18 16 14 H 0.04 2.04 6.27 -2.39 -0.01 2.02 16 15 N -0.70 -18.79 4.97 -447.22 -2.22 -21.01 16 16 C 0.58 19.19 7.76 86.66 0.67 19.87 16 17 O -0.58 -25.85 14.94 -4.05 -0.06 -25.91 16 18 C -0.28 -7.11 6.47 -18.75 -0.12 -7.23 16 19 C 0.03 0.48 11.85 67.61 0.80 1.29 16 20 O 0.10 1.92 11.06 76.98 0.85 2.77 16 21 N -0.37 -8.98 11.85 -44.77 -0.53 -9.51 16 22 C 0.06 1.74 5.78 45.16 0.26 2.00 16 23 C -0.03 -0.86 3.36 -10.82 -0.04 -0.89 16 24 C -0.11 -2.73 6.36 31.69 0.20 -2.53 16 25 C -0.12 -2.31 6.91 31.91 0.22 -2.09 16 26 C -0.12 -2.18 6.83 31.67 0.22 -1.96 16 27 C -0.11 -2.66 6.45 31.32 0.20 -2.46 16 28 C -0.14 -5.19 5.98 31.88 0.19 -5.00 16 29 C 0.16 6.20 5.18 87.60 0.45 6.65 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.05 2.80 6.05 -2.39 -0.01 2.79 16 32 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.06 2.91 5.29 -2.39 -0.01 2.90 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.09 2.06 7.85 -2.39 -0.02 2.04 16 36 H 0.09 2.27 6.28 -2.39 -0.01 2.26 16 37 H 0.42 6.48 7.66 -92.71 -0.71 5.77 16 38 H 0.28 0.30 7.68 -2.91 -0.02 0.27 16 39 H 0.08 2.90 6.33 -2.39 -0.02 2.88 16 40 H 0.07 1.63 7.72 -2.39 -0.02 1.61 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.06 1.44 7.67 -2.39 -0.02 1.42 16 48 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 49 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.02 1.02 7.99 -2.39 -0.02 1.00 16 51 H 0.06 2.06 6.88 -2.39 -0.02 2.04 16 Total: -1.00 -75.95 392.30 3.79 -72.15 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.24 Total: 18.56 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.12 Total: -1.89 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.39 Total: -113.89 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.79 Total: -23.15 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.95 3.79 -72.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052439746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.698 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds