Wall clock time and date at job start Wed Apr 1 2020 04:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48504 * 109.47103 * 269.99918 * 3 2 1 5 5 H 1.48492 * 109.47267 * 30.00050 * 3 2 1 6 6 H 1.48501 * 109.47037 * 150.00174 * 3 2 1 7 7 C 1.38808 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99822 * 164.68168 * 7 2 1 9 9 N 1.36934 * 120.00116 * 344.68242 * 7 2 1 10 10 C 1.47272 * 121.35342 * 155.99346 * 9 7 2 11 11 C 1.53182 * 108.06465 * 118.36078 * 10 9 7 12 12 N 1.45651 * 110.66271 * 47.06045 * 11 10 9 13 13 C 1.46507 * 117.69948 * 157.95483 * 12 11 10 14 14 H 1.08990 * 109.49902 * 359.80043 * 13 12 11 15 15 C 1.53041 * 109.49410 * 239.73481 * 13 12 11 16 16 C 1.53043 * 109.53760 * 178.65365 * 15 13 12 17 17 C 1.53198 * 109.31062 * 61.36512 * 16 15 13 18 18 N 1.46924 * 108.77546 * 305.36656 * 17 16 15 19 19 C 1.34771 * 120.62853 * 233.58362 * 18 17 16 20 20 O 1.21280 * 120.00231 * 179.97438 * 19 18 17 21 21 C 1.50706 * 120.00300 * 0.02562 * 19 18 17 22 22 C 1.54801 * 110.89608 * 68.14243 * 21 19 18 23 23 C 1.51095 * 104.64062 * 142.88917 * 22 21 19 24 24 C 1.30521 * 111.10742 * 343.19819 * 23 22 21 25 25 C 1.51098 * 111.10453 * 0.24390 * 24 23 22 26 26 C 1.46922 * 118.73769 * 53.86229 * 18 17 16 27 27 C 1.33377 * 124.59132 * 337.67412 * 12 11 10 28 28 O 1.21286 * 118.48734 * 184.60404 * 27 12 11 29 29 C 1.47051 * 121.35240 * 336.02042 * 9 7 2 30 30 H 0.97009 * 120.00164 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.71850 * 238.19324 * 10 9 7 32 32 H 1.09003 * 109.72093 * 358.80832 * 10 9 7 33 33 H 1.08998 * 109.40754 * 286.67890 * 11 10 9 34 34 H 1.09004 * 109.13581 * 167.27503 * 11 10 9 35 35 H 1.08998 * 109.46044 * 58.63501 * 15 13 12 36 36 H 1.08998 * 109.46448 * 298.67525 * 15 13 12 37 37 H 1.08998 * 109.49905 * 301.41654 * 16 15 13 38 38 H 1.08997 * 109.49813 * 181.31768 * 16 15 13 39 39 H 1.08997 * 109.58188 * 185.57881 * 17 16 15 40 40 H 1.08999 * 109.58515 * 65.15429 * 17 16 15 41 41 H 1.09005 * 110.90894 * 303.96609 * 21 19 18 42 42 H 1.09003 * 110.52887 * 24.05219 * 22 21 19 43 43 H 1.08996 * 110.32049 * 261.62256 * 22 21 19 44 44 H 1.08010 * 124.44681 * 163.46371 * 23 22 21 45 45 H 1.08009 * 124.44764 * 180.26813 * 24 23 22 46 46 H 1.08999 * 110.38876 * 135.25014 * 25 24 23 47 47 H 1.09000 * 110.39007 * 257.62511 * 25 24 23 48 48 H 1.08999 * 109.58933 * 65.92786 * 26 18 17 49 49 H 1.09008 * 109.58550 * 186.35180 * 26 18 17 50 50 H 1.09001 * 109.56644 * 102.89272 * 29 9 7 51 51 H 1.09001 * 109.66536 * 342.59950 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0614 -1.2186 -0.2476 9 7 1.3620 -2.3671 0.3122 10 6 1.8595 -3.6709 -0.1583 11 6 2.2055 -4.5186 1.0698 12 7 1.1297 -4.4660 2.0502 13 6 1.0429 -5.5561 3.0252 14 1 1.8443 -6.2719 2.8429 15 6 -0.3101 -6.2581 2.8873 16 6 -0.3885 -7.4182 3.8824 17 6 -0.2706 -6.8712 5.3085 18 7 0.9585 -6.0724 5.4086 19 6 1.8679 -6.3292 6.3694 20 8 2.8788 -5.6629 6.4413 21 6 1.6294 -7.4449 7.3540 22 6 1.6985 -8.8236 6.6535 23 6 2.3638 -9.7313 7.6617 24 6 2.9663 -9.0403 8.5907 25 6 2.7981 -7.5565 8.3604 26 6 1.1742 -4.9845 4.4450 27 6 0.2213 -3.4924 2.1261 28 8 -0.5762 -3.5151 3.0396 29 6 0.1406 -2.3670 1.1310 30 1 -0.4851 0.8401 0.0004 31 1 1.0887 -4.1679 -0.7472 32 1 2.7517 -3.5261 -0.7675 33 1 3.1226 -4.1423 1.5230 34 1 2.3576 -5.5523 0.7591 35 1 -0.4184 -6.6419 1.8729 36 1 -1.1105 -5.5477 3.0939 37 1 0.4265 -8.1165 3.6921 38 1 -1.3428 -7.9321 3.7676 39 1 -0.2264 -7.6999 6.0151 40 1 -1.1334 -6.2437 5.5317 41 1 0.6792 -7.3110 7.8711 42 1 2.2977 -8.7613 5.7451 43 1 0.6951 -9.1822 6.4238 44 1 2.3471 -10.8104 7.6169 45 1 3.5135 -9.4724 9.4156 46 1 2.5448 -7.0536 9.2937 47 1 3.7076 -7.1328 7.9346 48 1 0.4269 -4.2062 4.5992 49 1 2.1722 -4.5678 4.5818 50 1 -0.7291 -2.5087 0.4894 51 1 0.0534 -1.4177 1.6597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071260629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:50 Heat of formation + Delta-G solvation = -29.857071 kcal Electronic energy + Delta-G solvation = -32162.798388 eV Core-core repulsion = 28062.656909 eV Total energy + Delta-G solvation = -4100.141480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.07890 -41.19123 -38.90035 -38.07252 -37.71371 -36.12649 -33.94870 -33.06789 -31.68751 -30.58388 -30.12742 -29.10547 -28.11334 -26.58880 -25.34175 -24.58808 -23.36181 -23.01400 -21.60862 -19.89892 -19.82370 -19.64386 -18.75960 -18.23907 -17.89094 -17.35052 -17.00102 -16.92737 -16.46135 -16.42107 -15.89291 -15.58127 -15.30365 -15.22992 -15.06704 -14.83262 -14.44202 -14.18548 -14.03205 -13.85792 -13.59573 -13.44665 -13.30389 -13.21457 -12.99218 -12.83876 -12.71204 -12.66726 -12.48959 -12.34036 -12.23353 -12.16598 -12.07166 -11.88455 -11.80501 -11.74470 -11.72693 -10.90333 -10.70316 -10.58729 -9.97021 -9.78469 -9.43156 -8.88343 -7.95972 -5.40365 1.38469 1.44675 1.48225 1.51230 1.56447 1.61831 1.78140 2.23890 2.45933 3.22568 3.34185 3.45203 3.55745 3.62449 3.74476 3.87016 3.93595 4.00612 4.07997 4.13724 4.18442 4.22433 4.37786 4.43275 4.47179 4.53983 4.56897 4.64354 4.68890 4.74651 4.78253 4.84515 4.88936 4.90614 4.92325 4.96030 5.03324 5.07401 5.12872 5.17200 5.17928 5.26943 5.28438 5.43964 5.58233 5.63750 5.70200 6.01499 6.21766 6.36241 6.50972 6.95011 7.07693 7.23086 7.68906 8.20391 9.12571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002623 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.041407 B =10670.973454 C =11205.785495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.083 0.917 9 N -0.612 5.612 10 C 0.126 3.874 11 C 0.103 3.897 12 N -0.591 5.591 13 C 0.136 3.864 14 H 0.103 0.897 15 C -0.133 4.133 16 C -0.118 4.118 17 C 0.096 3.904 18 N -0.601 5.601 19 C 0.516 3.484 20 O -0.591 6.591 21 C -0.111 4.111 22 C -0.086 4.086 23 C -0.163 4.163 24 C -0.172 4.172 25 C -0.094 4.094 26 C 0.101 3.899 27 C 0.507 3.493 28 O -0.584 6.584 29 C 0.176 3.824 30 H 0.252 0.748 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.151 0.849 45 H 0.141 0.859 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.039 0.961 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -25.032 11.721 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.001 3.999 11 C -0.021 4.021 12 N -0.323 5.323 13 C 0.032 3.968 14 H 0.121 0.879 15 C -0.171 4.171 16 C -0.157 4.157 17 C -0.025 4.025 18 N -0.333 5.333 19 C 0.306 3.694 20 O -0.471 6.471 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.180 4.180 24 C -0.189 4.189 25 C -0.132 4.132 26 C -0.023 4.023 27 C 0.297 3.703 28 O -0.466 6.466 29 C 0.048 3.952 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.057 0.943 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.176 -24.518 12.153 27.390 hybrid contribution 0.293 1.973 -0.256 2.011 sum 1.469 -22.545 11.897 25.534 Atomic orbital electron populations 1.70112 1.06660 1.26188 1.55589 1.25813 0.96142 1.01681 1.01103 0.85251 0.77912 0.79394 0.77759 1.20520 1.22360 1.19619 1.19541 0.92870 0.84980 1.41645 0.89980 1.44386 1.28402 1.03024 1.57922 1.21523 0.99421 0.85068 0.93921 1.22147 0.88438 1.02069 0.89399 1.47372 1.29645 1.22659 1.32604 1.21591 1.00035 0.88283 0.86896 0.87896 1.21903 0.96329 0.98088 1.00788 1.21865 1.04766 0.96647 0.92378 1.22209 0.85109 0.95740 0.99451 1.48144 1.21646 1.33490 1.29979 1.21167 0.81849 0.84899 0.81489 1.90669 1.29760 1.52611 1.74094 1.22257 1.02225 0.93365 0.95338 1.21482 1.02907 0.90189 0.97751 1.23435 0.99015 1.00226 0.95354 1.23378 1.00939 0.94093 1.00535 1.21297 0.97535 0.95958 0.98373 1.21920 1.01516 0.90264 0.88584 1.21384 0.79592 0.83313 0.86050 1.90500 1.43023 1.77714 1.35359 1.20570 0.89895 0.94328 0.90432 0.93875 0.94162 0.89079 0.92568 0.87238 0.90939 0.92156 0.89764 0.87560 0.85917 0.91582 0.85536 0.91032 0.87206 0.83166 0.84144 0.90546 0.91686 0.91289 0.92506 0.94306 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.42 11.07 21.65 0.24 -55.18 16 2 C -0.05 -2.88 5.02 84.86 0.43 -2.46 16 3 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.26 -13.84 9.70 84.03 0.82 -13.03 16 8 H 0.08 4.12 7.88 -2.91 -0.02 4.10 16 9 N -0.61 -29.66 3.02 -703.09 -2.12 -31.78 16 10 C 0.13 4.54 6.61 86.29 0.57 5.11 16 11 C 0.10 3.10 6.46 86.60 0.56 3.66 16 12 N -0.59 -20.47 2.79 -800.74 -2.23 -22.71 16 13 C 0.14 3.85 2.63 45.21 0.12 3.97 16 14 H 0.10 2.47 7.73 -2.39 -0.02 2.45 16 15 C -0.13 -3.18 5.03 30.62 0.15 -3.03 16 16 C -0.12 -1.73 6.08 30.67 0.19 -1.54 16 17 C 0.10 1.58 6.05 86.36 0.52 2.10 16 18 N -0.60 -15.09 2.97 -818.06 -2.43 -17.51 16 19 C 0.52 13.73 6.97 87.66 0.61 14.34 16 20 O -0.59 -21.57 14.92 -3.03 -0.05 -21.61 16 21 C -0.11 -1.89 2.52 -10.37 -0.03 -1.92 16 22 C -0.09 -1.01 5.45 30.59 0.17 -0.84 16 23 C -0.16 -1.76 10.77 26.27 0.28 -1.48 16 24 C -0.17 -2.30 10.77 26.27 0.28 -2.01 16 25 C -0.09 -1.75 6.18 30.53 0.19 -1.56 16 26 C 0.10 3.34 5.67 86.51 0.49 3.83 16 27 C 0.51 22.05 6.98 87.79 0.61 22.66 16 28 O -0.58 -26.95 12.46 -3.05 -0.04 -26.98 16 29 C 0.18 8.90 5.13 85.44 0.44 9.33 16 30 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 3.00 7.96 -2.39 -0.02 2.98 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 2.33 7.94 -2.39 -0.02 2.31 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.88 6.11 -2.39 -0.01 1.87 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.14 4.21 -2.39 -0.01 1.13 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.13 1.62 7.79 -2.38 -0.02 1.60 16 42 H 0.07 1.02 7.89 -2.39 -0.02 1.00 16 43 H 0.11 0.64 6.72 -2.39 -0.02 0.63 16 44 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.61 6.96 -2.39 -0.02 1.60 16 48 H 0.07 2.76 5.66 -2.39 -0.01 2.75 16 49 H 0.06 2.19 7.00 -2.38 -0.02 2.17 16 50 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.07 4.34 6.43 -2.39 -0.02 4.33 16 Total: -1.00 -74.74 385.99 2.74 -72.00 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.93 Total: 19.78 kcal Atomic # 6 Polarization: 30.74 SS G_CDS: 6.40 Total: 37.14 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.54 Total: -127.18 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.08 Total: -48.60 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -74.74 2.74 -72.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071260629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.145 kcal (2) G-P(sol) polarization free energy of solvation -74.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds