Wall clock time and date at job start Wed Apr 1 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48501 * 109.46974 * 89.99524 * 3 2 1 5 5 H 1.48506 * 109.46808 * 330.00010 * 3 2 1 6 6 H 1.48497 * 109.47180 * 210.00097 * 3 2 1 7 7 C 1.38815 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99293 * 320.67157 * 7 2 1 9 9 N 1.36931 * 120.00178 * 140.66629 * 7 2 1 10 10 C 1.47265 * 121.35297 * 151.97115 * 9 7 2 11 11 C 1.53000 * 108.18560 * 118.47446 * 10 9 7 12 12 N 1.45645 * 110.76914 * 46.72581 * 11 10 9 13 13 C 1.46507 * 117.69945 * 158.09928 * 12 11 10 14 14 H 1.08995 * 109.50005 * 0.06559 * 13 12 11 15 15 C 1.53038 * 109.49490 * 120.16242 * 13 12 11 16 16 C 1.53041 * 109.53580 * 181.31394 * 15 13 12 17 17 C 1.53191 * 109.31407 * 298.63482 * 16 15 13 18 18 N 1.46917 * 108.77697 * 54.63433 * 17 16 15 19 19 C 1.34776 * 120.63146 * 126.36840 * 18 17 16 20 20 O 1.21284 * 120.00029 * 180.02562 * 19 18 17 21 21 C 1.50694 * 119.99914 * 0.02577 * 19 18 17 22 22 H 1.08994 * 115.55348 * 325.66794 * 21 19 18 23 23 C 1.53000 * 117.49980 * 111.37810 * 21 19 18 24 24 C 1.52994 * 60.00085 * 107.48769 * 23 21 19 25 25 C 1.52995 * 138.58917 * 130.88578 * 24 23 21 26 26 C 1.52996 * 138.59208 * 229.10506 * 24 23 21 27 27 C 1.46931 * 118.73853 * 306.39255 * 18 17 16 28 28 C 1.33378 * 124.59570 * 338.12231 * 12 11 10 29 29 O 1.21281 * 118.48974 * 184.29731 * 28 12 11 30 30 C 1.47049 * 121.35191 * 331.69308 * 9 7 2 31 31 H 0.97008 * 119.99607 * 176.54845 * 1 2 3 32 32 H 1.08995 * 109.72106 * 238.14794 * 10 9 7 33 33 H 1.09001 * 109.72291 * 358.76491 * 10 9 7 34 34 H 1.09000 * 109.21481 * 167.05747 * 11 10 9 35 35 H 1.08997 * 109.21603 * 286.43599 * 11 10 9 36 36 H 1.08994 * 109.46302 * 301.33654 * 15 13 12 37 37 H 1.09003 * 109.45969 * 61.29582 * 15 13 12 38 38 H 1.08998 * 109.49600 * 178.68451 * 16 15 13 39 39 H 1.08992 * 109.52599 * 58.60492 * 16 15 13 40 40 H 1.09006 * 109.58378 * 294.84765 * 17 16 15 41 41 H 1.08994 * 109.70619 * 174.49535 * 17 16 15 42 42 H 1.08999 * 117.50433 * 214.97255 * 23 21 19 43 43 H 1.08998 * 117.49986 * 0.02562 * 23 21 19 44 44 H 1.08997 * 117.50486 * 238.38968 * 25 24 23 45 45 H 1.09000 * 117.49971 * 23.41461 * 25 24 23 46 46 H 1.08999 * 117.49654 * 336.59985 * 26 24 23 47 47 H 1.09000 * 117.49543 * 121.61435 * 26 24 23 48 48 H 1.08997 * 109.58764 * 293.81958 * 27 18 17 49 49 H 1.08999 * 109.70172 * 173.46404 * 27 18 17 50 50 H 1.09003 * 109.56783 * 342.57768 * 30 9 7 51 51 H 1.08992 * 109.56771 * 102.93852 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4476 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.6537 -2.0312 0.5937 9 7 3.1470 -1.3368 -0.7510 10 6 4.2164 -2.2716 -0.3623 11 6 4.3700 -3.3107 -1.4748 12 7 4.4080 -2.6673 -2.7808 13 6 5.0244 -3.4055 -3.8860 14 1 5.3732 -4.3737 -3.5271 15 6 3.9945 -3.6132 -4.9987 16 6 4.6280 -4.4126 -6.1397 17 6 5.8093 -3.6252 -6.7151 18 7 6.7349 -3.2956 -5.6228 19 6 8.0404 -3.6195 -5.7077 20 8 8.7943 -3.3423 -4.7990 21 6 8.5634 -4.3261 -6.9317 22 1 7.8749 -5.0308 -7.3978 23 6 9.5045 -3.5446 -7.8505 24 6 10.0546 -4.6665 -6.9678 25 6 10.9464 -5.9021 -7.1051 26 6 11.2039 -4.8936 -5.9837 27 6 6.2102 -2.6065 -4.4359 28 6 3.9214 -1.4530 -3.0412 29 8 3.9406 -1.0556 -4.1869 30 6 3.3468 -0.5581 -1.9823 31 1 -0.4850 -0.8386 -0.0506 32 1 5.1523 -1.7277 -0.2353 33 1 3.9499 -2.7679 0.5709 34 1 5.2951 -3.8663 -1.3215 35 1 3.5271 -4.0009 -1.4399 36 1 3.1384 -4.1601 -4.6038 37 1 3.6646 -2.6443 -5.3737 38 1 3.8872 -4.5803 -6.9214 39 1 4.9803 -5.3719 -5.7606 40 1 5.4463 -2.7066 -7.1762 41 1 6.3251 -4.2294 -7.4614 42 1 9.4353 -3.7349 -8.9215 43 1 9.7458 -2.5194 -7.5695 44 1 10.5183 -6.8652 -6.8274 45 1 11.6528 -5.9231 -7.9349 46 1 12.0796 -4.2511 -6.0758 47 1 10.9451 -5.1932 -4.9682 48 1 5.8799 -1.6049 -4.7111 49 1 6.9889 -2.5387 -3.6762 50 1 2.3906 -0.1593 -2.3212 51 1 4.0380 0.2618 -1.7876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071273741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:52 Heat of formation + Delta-G solvation = 37.970055 kcal Electronic energy + Delta-G solvation = -31848.983793 eV Core-core repulsion = 27751.783518 eV Total energy + Delta-G solvation = -4097.200275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.85825 -39.92359 -38.09578 -36.89296 -36.20002 -34.71914 -33.05497 -32.46084 -31.86508 -30.19868 -29.15773 -26.48862 -25.95417 -23.93652 -23.82546 -22.94552 -22.68070 -21.59820 -20.79803 -19.88991 -18.73161 -18.49992 -17.56870 -17.15490 -16.50310 -16.14492 -15.95067 -15.32546 -15.26766 -15.12893 -14.71214 -14.51712 -14.47103 -14.20946 -13.95516 -13.69748 -13.42617 -13.15019 -13.03341 -12.73790 -12.66909 -12.42194 -12.38664 -12.00845 -11.78319 -11.74580 -11.47360 -11.24644 -11.04126 -10.98434 -10.75622 -10.62870 -10.52484 -10.47365 -10.38553 -10.27445 -9.88834 -9.80011 -9.48528 -9.23609 -8.84078 -8.31373 -8.21838 -7.21969 -6.51422 -3.40827 2.31878 2.66082 3.11529 3.33634 3.40457 3.45754 3.50420 3.55613 3.65630 3.95124 4.29683 4.45741 4.54774 4.60115 4.71128 4.76523 4.79148 4.81974 4.93013 5.10373 5.16696 5.19892 5.22642 5.29217 5.31186 5.35977 5.36060 5.38100 5.43664 5.56179 5.60116 5.64062 5.65730 5.74805 5.75674 5.81213 5.88903 5.89391 6.00729 6.13655 6.18530 6.28525 6.33960 6.40354 6.48836 6.56305 6.88597 7.29368 7.80952 7.92571 8.07629 8.25585 8.61558 8.86571 9.45962 10.05591 10.87384 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002538 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.398670 B =11030.966252 C =11301.454660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 1.015 2.985 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.125 3.875 11 C 0.101 3.899 12 N -0.593 5.593 13 C 0.134 3.866 14 H 0.080 0.920 15 C -0.141 4.141 16 C -0.130 4.130 17 C 0.107 3.893 18 N -0.602 5.602 19 C 0.541 3.459 20 O -0.537 6.537 21 C -0.141 4.141 22 H 0.125 0.875 23 C -0.099 4.099 24 C -0.202 4.202 25 C -0.130 4.130 26 C -0.113 4.113 27 C 0.098 3.902 28 C 0.513 3.487 29 O -0.565 6.565 30 C 0.124 3.876 31 H 0.270 0.730 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.970 -12.555 -15.702 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.195 4.195 3 Si 0.843 3.157 4 H -0.221 1.221 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.501 4.501 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.002 4.002 11 C -0.024 4.024 12 N -0.326 5.326 13 C 0.029 3.971 14 H 0.098 0.902 15 C -0.179 4.179 16 C -0.168 4.168 17 C -0.016 4.016 18 N -0.335 5.335 19 C 0.329 3.671 20 O -0.413 6.413 21 C -0.162 4.162 22 H 0.143 0.857 23 C -0.137 4.137 24 C -0.203 4.203 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.025 4.025 28 C 0.302 3.698 29 O -0.445 6.445 30 C -0.004 4.004 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.117 0.883 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.098 -10.542 -15.660 25.470 hybrid contribution -0.073 -1.808 0.150 1.816 sum 17.024 -12.351 -15.511 26.133 Atomic orbital electron populations 1.70918 1.07120 1.30123 1.43548 1.26163 0.95821 1.00909 0.96652 0.84626 0.76409 0.77471 0.77148 1.22052 1.21664 1.19867 1.19894 1.01036 0.98926 1.30226 0.91367 1.44400 1.18258 1.47004 1.22285 1.21360 0.92152 0.91493 0.95166 1.22058 1.00567 0.96924 0.82823 1.47335 1.58532 1.16861 1.09837 1.21332 0.92897 0.94890 0.88007 0.90161 1.22045 0.97818 1.02869 0.95156 1.21888 0.97354 0.98728 0.98869 1.21823 0.90660 1.00243 0.88888 1.47978 1.07646 1.58577 1.19344 1.19671 0.81509 0.78545 0.87369 1.90689 1.56205 1.54505 1.39931 1.21995 0.92356 1.03539 0.98316 0.85723 1.22659 0.98612 0.96075 0.96322 1.21165 0.92034 1.01247 1.05842 1.22764 1.00076 0.92682 1.01123 1.22597 0.96616 1.00635 0.95140 1.22054 0.95712 0.97166 0.87547 1.21481 0.76024 0.81475 0.90808 1.90526 1.58236 1.73690 1.22041 1.21626 1.01177 0.93107 0.84482 0.91975 0.94870 0.90137 0.91742 0.92208 0.91802 0.88205 0.90353 0.91870 0.90768 0.89710 0.87540 0.88043 0.88559 0.88337 0.88523 0.88181 0.88839 0.89403 0.88267 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.71 55.49 0.76 -25.19 16 2 C 0.01 0.31 4.77 -17.43 -0.08 0.22 16 3 Si 1.01 24.42 27.46 -169.99 -4.67 19.75 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.07 4.81 56.52 0.27 -5.80 16 7 C -0.37 -9.89 9.72 -15.06 -0.15 -10.03 16 8 H 0.07 1.91 8.06 -52.48 -0.42 1.49 16 9 N -0.59 -13.55 2.71 -173.91 -0.47 -14.02 16 10 C 0.12 2.28 6.61 -3.62 -0.02 2.26 16 11 C 0.10 1.59 6.45 -4.50 -0.03 1.56 16 12 N -0.59 -10.12 2.79 -167.31 -0.47 -10.59 16 13 C 0.13 1.94 2.61 -67.81 -0.18 1.77 16 14 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 15 C -0.14 -1.91 5.02 -26.69 -0.13 -2.05 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 17 C 0.11 1.02 6.35 -3.72 -0.02 1.00 16 18 N -0.60 -7.59 2.97 -172.77 -0.51 -8.10 16 19 C 0.54 7.15 7.48 -10.99 -0.08 7.07 16 20 O -0.54 -9.01 15.66 5.55 0.09 -8.93 16 21 C -0.14 -1.36 5.12 -91.77 -0.47 -1.83 16 22 H 0.13 0.92 6.57 -51.93 -0.34 0.58 16 23 C -0.10 -0.82 10.23 -26.73 -0.27 -1.10 16 24 C -0.20 -1.91 5.05 -154.52 -0.78 -2.69 16 25 C -0.13 -0.95 10.53 -26.73 -0.28 -1.23 16 26 C -0.11 -1.06 10.16 -26.73 -0.27 -1.33 16 27 C 0.10 1.48 5.65 -3.71 -0.02 1.46 16 28 C 0.51 10.24 6.95 -11.91 -0.08 10.16 16 29 O -0.57 -11.75 12.49 5.56 0.07 -11.68 16 30 C 0.12 2.74 4.60 -5.20 -0.02 2.72 16 31 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.42 7.96 -51.93 -0.41 1.00 16 34 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.63 5.79 -51.93 -0.30 1.33 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.58 5.51 -51.93 -0.29 0.30 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.62 5.97 -51.93 -0.31 1.31 16 49 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 50 H 0.10 2.39 6.86 -51.93 -0.36 2.03 16 51 H 0.07 1.49 6.04 -51.93 -0.31 1.18 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -31.93 392.10 -10.64 -42.57 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.28 Total: 3.74 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -3.07 Total: 6.53 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.69 Total: -57.90 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.16 Total: -20.61 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -4.67 Total: 19.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.93 -10.64 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071273741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.542 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds