Wall clock time and date at job start Wed Apr 1 2020 04:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48501 * 109.46974 * 89.99524 * 3 2 1 5 5 H 1.48506 * 109.46808 * 330.00010 * 3 2 1 6 6 H 1.48497 * 109.47180 * 210.00097 * 3 2 1 7 7 C 1.38815 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99293 * 320.67157 * 7 2 1 9 9 N 1.36931 * 120.00178 * 140.66629 * 7 2 1 10 10 C 1.47265 * 121.35297 * 151.97115 * 9 7 2 11 11 C 1.53000 * 108.18560 * 118.47446 * 10 9 7 12 12 N 1.45645 * 110.76914 * 46.72581 * 11 10 9 13 13 C 1.46507 * 117.69945 * 158.09928 * 12 11 10 14 14 H 1.08995 * 109.50005 * 0.06559 * 13 12 11 15 15 C 1.53038 * 109.49490 * 120.16242 * 13 12 11 16 16 C 1.53041 * 109.53580 * 181.31394 * 15 13 12 17 17 C 1.53191 * 109.31407 * 298.63482 * 16 15 13 18 18 N 1.46917 * 108.77697 * 54.63433 * 17 16 15 19 19 C 1.34776 * 120.63146 * 126.36840 * 18 17 16 20 20 O 1.21284 * 120.00029 * 180.02562 * 19 18 17 21 21 C 1.50694 * 119.99914 * 0.02577 * 19 18 17 22 22 H 1.08994 * 115.55348 * 325.66794 * 21 19 18 23 23 C 1.53000 * 117.49980 * 111.37810 * 21 19 18 24 24 C 1.52994 * 60.00085 * 107.48769 * 23 21 19 25 25 C 1.52995 * 138.58917 * 130.88578 * 24 23 21 26 26 C 1.52996 * 138.59208 * 229.10506 * 24 23 21 27 27 C 1.46931 * 118.73853 * 306.39255 * 18 17 16 28 28 C 1.33378 * 124.59570 * 338.12231 * 12 11 10 29 29 O 1.21281 * 118.48974 * 184.29731 * 28 12 11 30 30 C 1.47049 * 121.35191 * 331.69308 * 9 7 2 31 31 H 0.97008 * 119.99607 * 176.54845 * 1 2 3 32 32 H 1.08995 * 109.72106 * 238.14794 * 10 9 7 33 33 H 1.09001 * 109.72291 * 358.76491 * 10 9 7 34 34 H 1.09000 * 109.21481 * 167.05747 * 11 10 9 35 35 H 1.08997 * 109.21603 * 286.43599 * 11 10 9 36 36 H 1.08994 * 109.46302 * 301.33654 * 15 13 12 37 37 H 1.09003 * 109.45969 * 61.29582 * 15 13 12 38 38 H 1.08998 * 109.49600 * 178.68451 * 16 15 13 39 39 H 1.08992 * 109.52599 * 58.60492 * 16 15 13 40 40 H 1.09006 * 109.58378 * 294.84765 * 17 16 15 41 41 H 1.08994 * 109.70619 * 174.49535 * 17 16 15 42 42 H 1.08999 * 117.50433 * 214.97255 * 23 21 19 43 43 H 1.08998 * 117.49986 * 0.02562 * 23 21 19 44 44 H 1.08997 * 117.50486 * 238.38968 * 25 24 23 45 45 H 1.09000 * 117.49971 * 23.41461 * 25 24 23 46 46 H 1.08999 * 117.49654 * 336.59985 * 26 24 23 47 47 H 1.09000 * 117.49543 * 121.61435 * 26 24 23 48 48 H 1.08997 * 109.58764 * 293.81958 * 27 18 17 49 49 H 1.08999 * 109.70172 * 173.46404 * 27 18 17 50 50 H 1.09003 * 109.56783 * 342.57768 * 30 9 7 51 51 H 1.08992 * 109.56771 * 102.93852 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4476 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.6537 -2.0312 0.5937 9 7 3.1470 -1.3368 -0.7510 10 6 4.2164 -2.2716 -0.3623 11 6 4.3700 -3.3107 -1.4748 12 7 4.4080 -2.6673 -2.7808 13 6 5.0244 -3.4055 -3.8860 14 1 5.3732 -4.3737 -3.5271 15 6 3.9945 -3.6132 -4.9987 16 6 4.6280 -4.4126 -6.1397 17 6 5.8093 -3.6252 -6.7151 18 7 6.7349 -3.2956 -5.6228 19 6 8.0404 -3.6195 -5.7077 20 8 8.7943 -3.3423 -4.7990 21 6 8.5634 -4.3261 -6.9317 22 1 7.8749 -5.0308 -7.3978 23 6 9.5045 -3.5446 -7.8505 24 6 10.0546 -4.6665 -6.9678 25 6 10.9464 -5.9021 -7.1051 26 6 11.2039 -4.8936 -5.9837 27 6 6.2102 -2.6065 -4.4359 28 6 3.9214 -1.4530 -3.0412 29 8 3.9406 -1.0556 -4.1869 30 6 3.3468 -0.5581 -1.9823 31 1 -0.4850 -0.8386 -0.0506 32 1 5.1523 -1.7277 -0.2353 33 1 3.9499 -2.7679 0.5709 34 1 5.2951 -3.8663 -1.3215 35 1 3.5271 -4.0009 -1.4399 36 1 3.1384 -4.1601 -4.6038 37 1 3.6646 -2.6443 -5.3737 38 1 3.8872 -4.5803 -6.9214 39 1 4.9803 -5.3719 -5.7606 40 1 5.4463 -2.7066 -7.1762 41 1 6.3251 -4.2294 -7.4614 42 1 9.4353 -3.7349 -8.9215 43 1 9.7458 -2.5194 -7.5695 44 1 10.5183 -6.8652 -6.8274 45 1 11.6528 -5.9231 -7.9349 46 1 12.0796 -4.2511 -6.0758 47 1 10.9451 -5.1932 -4.9682 48 1 5.8799 -1.6049 -4.7111 49 1 6.9889 -2.5387 -3.6762 50 1 2.3906 -0.1593 -2.3212 51 1 4.0380 0.2618 -1.7876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071273741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:51 Heat of formation + Delta-G solvation = 18.977189 kcal Electronic energy + Delta-G solvation = -31849.807385 eV Core-core repulsion = 27751.783518 eV Total energy + Delta-G solvation = -4098.023867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.09567 -41.07805 -38.98551 -37.98298 -37.80646 -36.20461 -34.24404 -33.57824 -33.20372 -31.52778 -30.68335 -28.15394 -26.99693 -25.46992 -24.91222 -24.01860 -23.28374 -23.09839 -21.91544 -20.73476 -20.45300 -19.45026 -18.98453 -18.40531 -17.93997 -17.46654 -17.13222 -16.60349 -16.30196 -16.02845 -15.89051 -15.80326 -15.71550 -15.47539 -15.37121 -15.01288 -14.76715 -14.43660 -14.36828 -14.14410 -14.01079 -13.81099 -13.39564 -13.07659 -12.86731 -12.76143 -12.68940 -12.57376 -12.42513 -12.35893 -12.02423 -11.91293 -11.82341 -11.67663 -11.44723 -11.18625 -11.05590 -10.94293 -10.85431 -10.72987 -10.32957 -10.03056 -9.49840 -9.17161 -8.65060 -5.51310 1.37208 1.44822 1.53262 1.56833 1.65781 1.72516 2.13315 2.54511 2.71718 2.79289 2.80796 3.29453 3.30513 3.47287 3.52560 3.79042 3.81458 3.87739 3.91215 3.97724 4.04378 4.08602 4.15609 4.34331 4.39050 4.43065 4.47248 4.49823 4.53703 4.59101 4.61106 4.72003 4.74030 4.75967 4.79168 4.82171 4.84975 4.89263 4.97378 5.02082 5.03756 5.05398 5.10395 5.19867 5.27205 5.39603 5.61331 5.80829 6.15129 6.33207 6.41341 6.71906 7.07413 7.11178 7.47780 8.02119 8.71116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002538 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.398670 B =11030.966252 C =11301.454660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.038 4.038 3 Si 1.056 2.944 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.357 4.357 8 H 0.044 0.956 9 N -0.607 5.607 10 C 0.121 3.879 11 C 0.105 3.895 12 N -0.590 5.590 13 C 0.136 3.864 14 H 0.100 0.900 15 C -0.138 4.138 16 C -0.120 4.120 17 C 0.103 3.897 18 N -0.601 5.601 19 C 0.535 3.465 20 O -0.582 6.582 21 C -0.143 4.143 22 H 0.156 0.844 23 C -0.087 4.087 24 C -0.225 4.225 25 C -0.101 4.101 26 C -0.137 4.137 27 C 0.108 3.892 28 C 0.512 3.488 29 O -0.577 6.577 30 C 0.124 3.876 31 H 0.258 0.742 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.237 -14.831 -18.185 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.239 4.239 3 Si 0.881 3.119 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.486 4.486 8 H 0.062 0.938 9 N -0.334 5.334 10 C -0.004 4.004 11 C -0.019 4.019 12 N -0.321 5.321 13 C 0.032 3.968 14 H 0.118 0.882 15 C -0.176 4.176 16 C -0.159 4.159 17 C -0.018 4.018 18 N -0.333 5.333 19 C 0.325 3.675 20 O -0.462 6.462 21 C -0.164 4.164 22 H 0.174 0.826 23 C -0.124 4.124 24 C -0.226 4.226 25 C -0.138 4.138 26 C -0.174 4.174 27 C -0.016 4.016 28 C 0.300 3.700 29 O -0.458 6.458 30 C -0.005 4.005 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.137 0.863 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.399 -12.867 -18.165 29.527 hybrid contribution -0.729 -1.182 0.943 1.679 sum 18.670 -14.050 -17.223 29.027 Atomic orbital electron populations 1.71021 1.08187 1.29357 1.47256 1.27074 0.95805 1.03930 0.97054 0.84064 0.76323 0.73986 0.77499 1.21374 1.22598 1.17303 1.19762 1.01899 0.97794 1.29117 0.93787 1.44421 1.18780 1.47845 1.22317 1.21566 0.91124 0.91189 0.96542 1.22051 1.02598 0.95958 0.81288 1.47331 1.57547 1.16067 1.11204 1.21494 0.92820 0.94973 0.87537 0.88164 1.21970 0.97579 1.01936 0.96128 1.21866 0.97647 0.98427 0.97926 1.22077 0.90416 1.00759 0.88548 1.48074 1.08159 1.57915 1.19156 1.20400 0.81115 0.77987 0.88028 1.90668 1.57285 1.56387 1.41864 1.22049 0.93051 1.04232 0.97049 0.82636 1.22763 0.96996 0.94941 0.97735 1.21438 0.91856 1.03001 1.06309 1.22852 0.98857 0.91994 1.00075 1.22596 0.97241 1.02647 0.94914 1.21700 0.95189 0.96407 0.88332 1.20937 0.76678 0.82449 0.89936 1.90535 1.58879 1.74293 1.22107 1.21501 1.00150 0.93840 0.84967 0.93316 0.93402 0.89459 0.87886 0.92157 0.92424 0.91157 0.88029 0.90369 0.91233 0.85972 0.84272 0.89644 0.87619 0.86272 0.88345 0.90230 0.91497 0.91265 0.90890 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.14 13.71 21.65 0.30 -55.84 16 2 C -0.04 -2.14 4.77 84.86 0.40 -1.74 16 3 Si 1.06 50.30 27.46 68.60 1.88 52.19 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.25 -10.69 4.81 99.48 0.48 -10.21 16 7 C -0.36 -19.26 9.72 84.04 0.82 -18.44 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 N -0.61 -27.64 2.71 -704.12 -1.91 -29.55 16 10 C 0.12 4.24 6.61 86.23 0.57 4.81 16 11 C 0.10 3.08 6.45 86.54 0.56 3.64 16 12 N -0.59 -19.47 2.79 -802.40 -2.24 -21.71 16 13 C 0.14 3.73 2.61 45.07 0.12 3.84 16 14 H 0.10 2.40 7.73 -2.39 -0.02 2.38 16 15 C -0.14 -3.52 5.02 30.62 0.15 -3.37 16 16 C -0.12 -1.93 6.08 30.67 0.19 -1.74 16 17 C 0.10 1.65 6.35 86.36 0.55 2.20 16 18 N -0.60 -14.06 2.97 -818.92 -2.43 -16.49 16 19 C 0.53 13.31 7.48 87.66 0.66 13.96 16 20 O -0.58 -19.56 15.66 -3.04 -0.05 -19.61 16 21 C -0.14 -2.30 5.12 -11.54 -0.06 -2.36 16 22 H 0.16 1.48 6.57 -2.39 -0.02 1.46 16 23 C -0.09 -1.18 10.23 30.59 0.31 -0.87 16 24 C -0.23 -3.68 5.05 -52.19 -0.26 -3.95 16 25 C -0.10 -1.16 10.53 30.59 0.32 -0.84 16 26 C -0.14 -2.43 10.16 30.59 0.31 -2.12 16 27 C 0.11 3.18 5.65 86.36 0.49 3.67 16 28 C 0.51 20.44 6.95 87.68 0.61 21.05 16 29 O -0.58 -24.31 12.49 -3.03 -0.04 -24.34 16 30 C 0.12 5.49 4.60 85.33 0.39 5.88 16 31 H 0.26 15.75 8.73 -92.70 -0.81 14.94 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.94 7.96 -2.39 -0.02 2.92 16 34 H 0.10 2.32 7.94 -2.39 -0.02 2.30 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 2.26 5.79 -2.39 -0.01 2.25 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.12 1.07 5.51 -2.39 -0.01 1.05 16 42 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 46 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.07 2.34 5.97 -2.39 -0.01 2.33 16 49 H 0.07 2.29 7.01 -2.39 -0.02 2.27 16 50 H 0.07 3.62 6.86 -2.39 -0.02 3.60 16 51 H 0.07 3.09 6.04 -2.39 -0.01 3.07 16 Total: -1.00 -73.74 392.10 2.30 -71.43 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.67 Total: 20.27 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 6.13 Total: 23.65 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -6.28 Total: -123.59 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.09 Total: -43.96 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.88 Total: 52.19 kcal Total: -73.74 2.30 -71.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071273741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.410 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds