Wall clock time and date at job start Wed Apr 1 2020 04:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00528 * 2 1 4 4 H 1.48505 * 109.46879 * 270.00113 * 3 2 1 5 5 H 1.48500 * 109.46994 * 29.99698 * 3 2 1 6 6 H 1.48493 * 109.47122 * 150.00063 * 3 2 1 7 7 C 1.38812 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00158 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00304 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.53948 * 325.17140 * 10 9 7 12 12 C 1.53171 * 109.61422 * 85.39640 * 10 9 7 13 13 C 1.53096 * 109.16263 * 176.88999 * 12 10 9 14 14 O 1.42903 * 109.42501 * 302.40123 * 13 12 10 15 15 C 1.42901 * 114.09811 * 61.13240 * 14 13 12 16 16 H 1.09003 * 109.47953 * 58.85331 * 15 14 13 17 17 C 1.53002 * 109.48122 * 178.87343 * 15 14 13 18 18 C 1.53039 * 109.45869 * 60.00865 * 17 15 14 19 19 C 1.53199 * 109.31009 * 178.60542 * 18 17 15 20 20 N 1.46928 * 108.76667 * 54.65524 * 19 18 17 21 21 C 1.34776 * 120.62737 * 126.36395 * 20 19 18 22 22 O 1.21700 * 119.99254 * 179.87709 * 21 20 19 23 23 C 1.46670 * 120.00362 * 359.87685 * 21 20 19 24 24 C 1.37871 * 126.23558 * 209.50752 * 23 21 20 25 25 C 1.39835 * 107.08901 * 179.97438 * 24 23 21 26 26 C 1.35449 * 107.86106 * 0.02562 * 25 24 23 27 27 N 1.35528 * 108.87610 * 359.72931 * 26 25 24 28 28 H 0.97004 * 125.68418 * 180.30692 * 27 26 25 29 29 C 1.46918 * 118.73762 * 306.38063 * 20 19 18 30 30 C 1.53043 * 109.45783 * 299.95164 * 17 15 14 31 31 C 1.53094 * 109.42801 * 298.86378 * 15 14 13 32 32 H 0.97003 * 119.99245 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99719 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.52610 * 296.79749 * 12 10 9 35 35 H 1.09007 * 109.52368 * 56.98833 * 12 10 9 36 36 H 1.09000 * 109.47842 * 62.37076 * 13 12 10 37 37 H 1.08992 * 109.48136 * 182.39887 * 13 12 10 38 38 H 1.09003 * 109.46157 * 179.97438 * 17 15 14 39 39 H 1.09003 * 109.49351 * 298.56304 * 18 17 15 40 40 H 1.08989 * 109.50075 * 58.66236 * 18 17 15 41 41 H 1.08999 * 109.59591 * 294.86251 * 19 18 17 42 42 H 1.09000 * 109.58019 * 174.43437 * 19 18 17 43 43 H 1.08001 * 126.45330 * 359.96635 * 24 23 21 44 44 H 1.08003 * 126.06684 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.56438 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.59232 * 293.82730 * 29 20 19 47 47 H 1.09000 * 109.59040 * 173.39785 * 29 20 19 48 48 H 1.08999 * 109.50242 * 301.33558 * 30 17 15 49 49 H 1.09008 * 109.49580 * 61.40402 * 30 17 15 50 50 H 1.08996 * 109.51882 * 177.50823 * 31 15 14 51 51 H 1.08999 * 109.52187 * 297.69567 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4700 -2.1375 -0.0005 9 7 3.3796 -1.2024 0.0000 10 6 4.1120 -2.4712 0.0000 11 1 3.5637 -3.2086 0.5863 12 6 4.2693 -2.9741 -1.4382 13 6 5.1022 -4.2586 -1.4332 14 8 6.3691 -4.0012 -0.8243 15 6 6.2862 -3.5730 0.5366 16 1 5.7773 -4.3350 1.1270 17 6 7.6960 -3.3558 1.0899 18 6 8.4097 -2.2854 0.2611 19 6 9.8080 -2.0458 0.8393 20 7 10.5184 -3.3301 0.9062 21 6 11.7327 -3.4734 0.3393 22 8 12.3118 -4.5419 0.4035 23 6 12.3562 -2.3418 -0.3550 24 6 13.2349 -2.4197 -1.4145 25 6 13.5765 -1.1091 -1.7623 26 6 12.9156 -0.2720 -0.9273 27 7 12.1662 -1.0083 -0.0710 28 1 11.5928 -0.6547 0.6269 29 6 9.8797 -4.4552 1.6023 30 6 8.4805 -4.6678 1.0158 31 6 5.5009 -2.2609 0.6106 32 1 -0.4849 0.8401 -0.0004 33 1 3.8646 -0.3624 0.0004 34 1 3.2862 -3.1790 -1.8621 35 1 4.7739 -2.2152 -2.0364 36 1 4.5778 -5.0296 -0.8686 37 1 5.2534 -4.5978 -2.4579 38 1 7.6324 -3.0288 2.1278 39 1 8.4959 -2.6227 -0.7718 40 1 7.8383 -1.3580 0.2950 41 1 9.7221 -1.6231 1.8403 42 1 10.3564 -1.3579 0.1958 43 1 13.5922 -3.3229 -1.8868 44 1 14.2486 -0.8163 -2.5553 45 1 12.9730 0.8063 -0.9439 46 1 9.7996 -4.2291 2.6656 47 1 10.4754 -5.3573 1.4623 48 1 7.9594 -5.4361 1.5871 49 1 8.5655 -4.9826 -0.0243 50 1 5.3987 -1.9559 1.6520 51 1 6.0303 -1.4877 0.0539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075383476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:41 Heat of formation + Delta-G solvation = -11.103055 kcal Electronic energy + Delta-G solvation = -31401.312279 eV Core-core repulsion = 27301.984035 eV Total energy + Delta-G solvation = -4099.328245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83352 -40.15974 -39.21148 -37.40275 -35.26963 -33.98232 -32.30197 -32.00457 -31.10865 -30.20500 -29.89673 -29.31948 -26.19549 -24.36457 -23.81770 -23.16989 -22.55435 -21.39599 -21.11562 -20.42219 -19.97506 -19.76037 -18.12859 -17.66134 -16.77766 -16.09433 -15.93266 -15.66489 -15.59637 -14.80016 -14.74631 -14.52044 -14.38291 -14.14508 -13.98101 -13.86499 -13.67833 -13.57845 -13.29471 -13.02630 -12.91042 -12.72581 -12.59294 -12.52227 -12.31496 -11.56723 -11.49980 -11.38819 -11.25715 -11.08460 -11.03162 -10.69590 -10.52087 -10.50551 -10.28935 -10.18638 -9.85598 -9.66625 -9.30324 -9.27923 -9.02177 -8.96659 -8.52284 -7.34795 -5.83852 -3.19838 1.22881 2.40052 2.55240 2.72301 3.13087 3.30145 3.33226 3.38987 3.89329 4.17710 4.33719 4.50503 4.52159 4.58939 4.73415 4.75956 4.92098 4.96030 5.05479 5.09874 5.15791 5.21955 5.22496 5.30468 5.33679 5.40465 5.47694 5.50158 5.56096 5.63791 5.69004 5.72548 5.75997 5.83039 5.86728 5.89655 5.98983 6.05832 6.13850 6.20592 6.24681 6.27424 6.40131 6.46569 6.59266 6.67335 6.88968 6.96541 7.06400 7.42710 7.83446 7.91641 8.35191 9.13176 9.85774 10.05618 11.34446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.002560 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.831804 B =10934.696451 C =12113.820899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.183 3.817 11 H 0.054 0.946 12 C -0.171 4.171 13 C 0.064 3.936 14 O -0.380 6.380 15 C 0.101 3.899 16 H 0.058 0.942 17 C -0.076 4.076 18 C -0.127 4.127 19 C 0.086 3.914 20 N -0.607 5.607 21 C 0.590 3.410 22 O -0.532 6.532 23 C -0.051 4.051 24 C -0.112 4.112 25 C -0.209 4.209 26 C 0.015 3.985 27 N -0.543 5.543 28 H 0.420 0.580 29 C 0.112 3.888 30 C -0.126 4.126 31 C -0.158 4.158 32 H 0.260 0.740 33 H 0.360 0.640 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.413 -4.121 1.467 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.389 5.389 10 C 0.073 3.927 11 H 0.072 0.928 12 C -0.212 4.212 13 C -0.013 4.013 14 O -0.299 6.299 15 C 0.043 3.957 16 H 0.076 0.924 17 C -0.095 4.095 18 C -0.165 4.165 19 C -0.038 4.038 20 N -0.341 5.341 21 C 0.379 3.621 22 O -0.408 6.408 23 C -0.163 4.163 24 C -0.138 4.138 25 C -0.233 4.233 26 C -0.120 4.120 27 N -0.144 5.144 28 H 0.262 0.738 29 C -0.009 4.009 30 C -0.164 4.164 31 C -0.196 4.196 32 H 0.070 0.930 33 H 0.193 0.807 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.188 0.812 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.507 -4.751 1.583 25.994 hybrid contribution -0.251 1.696 0.308 1.742 sum 25.255 -3.055 1.891 25.509 Atomic orbital electron populations 1.69702 1.05107 1.25865 1.57381 1.24681 0.95237 0.97225 1.01985 0.86542 0.79129 0.85009 0.77772 1.21086 1.21718 1.20422 1.19067 0.80549 0.94688 1.43162 0.89255 1.42769 1.03997 1.01880 1.90225 1.20166 0.90093 0.89421 0.92977 0.92830 1.22885 1.00316 0.96953 1.01019 1.22580 0.84355 0.96778 0.97559 1.87843 1.29243 1.87367 1.25442 1.22010 0.94679 0.95296 0.83733 0.92414 1.21186 0.93451 0.95575 0.99268 1.21954 0.93659 0.99871 1.01008 1.22281 0.94568 0.85375 1.01540 1.48043 1.17601 1.13053 1.55354 1.17160 0.80514 0.86782 0.77633 1.90831 1.63175 1.27374 1.59449 1.20344 1.08229 0.82840 1.04891 1.21305 0.97795 0.98256 0.96478 1.20912 1.06224 0.92410 1.03782 1.22108 0.97847 0.97745 0.94272 1.42777 1.36824 1.05730 1.29097 0.73770 1.21680 0.93957 0.89948 0.95359 1.21924 0.94141 0.97375 1.03002 1.22594 0.97296 0.97781 1.01975 0.93016 0.80686 0.90780 0.91919 0.93658 0.89622 0.89952 0.90118 0.90031 0.90985 0.89431 0.83659 0.83900 0.81159 0.91408 0.88738 0.90576 0.90296 0.91055 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.58 27.74 -169.99 -4.71 16.86 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.24 -6.71 10.42 -15.06 -0.16 -6.87 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 N -0.75 -16.98 4.93 -53.25 -0.26 -17.24 16 10 C 0.18 3.32 2.86 -67.75 -0.19 3.13 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.17 -2.85 5.73 -26.59 -0.15 -3.00 16 13 C 0.06 0.88 6.84 37.21 0.25 1.13 16 14 O -0.38 -5.13 9.11 -35.23 -0.32 -5.45 16 15 C 0.10 1.22 2.38 -26.68 -0.06 1.16 16 16 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.08 -0.73 2.04 -90.58 -0.18 -0.92 16 18 C -0.13 -1.19 4.88 -26.61 -0.13 -1.32 16 19 C 0.09 0.65 5.57 -3.71 -0.02 0.63 16 20 N -0.61 -5.95 2.97 -174.31 -0.52 -6.47 16 21 C 0.59 7.13 7.63 -12.86 -0.10 7.03 16 22 O -0.53 -8.15 16.42 5.19 0.09 -8.06 16 23 C -0.05 -0.53 6.37 -81.98 -0.52 -1.05 16 24 C -0.11 -1.15 10.77 -39.12 -0.42 -1.57 16 25 C -0.21 -1.70 10.81 -39.98 -0.43 -2.13 16 26 C 0.02 0.10 11.89 -16.91 -0.20 -0.10 16 27 N -0.54 -3.97 4.74 -9.39 -0.04 -4.02 16 28 H 0.42 2.10 6.47 -40.82 -0.26 1.84 16 29 C 0.11 1.04 6.43 -3.71 -0.02 1.01 16 30 C -0.13 -1.18 5.20 -26.61 -0.14 -1.32 16 31 C -0.16 -2.26 4.60 -26.59 -0.12 -2.38 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.36 8.06 5.66 -40.82 -0.23 7.83 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.93 7.73 -51.93 -0.40 0.53 16 40 H 0.08 0.76 6.31 -51.94 -0.33 0.43 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.60 3.88 -51.93 -0.20 0.40 16 43 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.90 7.73 -51.92 -0.40 0.50 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.99 6.28 -51.93 -0.33 0.66 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -34.10 391.63 -9.82 -43.93 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.02 Total: 9.12 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.70 Total: -6.53 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.05 Total: -55.77 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.24 Total: -13.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.10 -9.82 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075383476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.823 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds