Wall clock time and date at job start Wed Apr 1 2020 04:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00528 * 2 1 4 4 H 1.48505 * 109.46879 * 270.00113 * 3 2 1 5 5 H 1.48500 * 109.46994 * 29.99698 * 3 2 1 6 6 H 1.48493 * 109.47122 * 150.00063 * 3 2 1 7 7 C 1.38812 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00158 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00304 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.53948 * 325.17140 * 10 9 7 12 12 C 1.53171 * 109.61422 * 85.39640 * 10 9 7 13 13 C 1.53096 * 109.16263 * 176.88999 * 12 10 9 14 14 O 1.42903 * 109.42501 * 302.40123 * 13 12 10 15 15 C 1.42901 * 114.09811 * 61.13240 * 14 13 12 16 16 H 1.09003 * 109.47953 * 58.85331 * 15 14 13 17 17 C 1.53002 * 109.48122 * 178.87343 * 15 14 13 18 18 C 1.53039 * 109.45869 * 60.00865 * 17 15 14 19 19 C 1.53199 * 109.31009 * 178.60542 * 18 17 15 20 20 N 1.46928 * 108.76667 * 54.65524 * 19 18 17 21 21 C 1.34776 * 120.62737 * 126.36395 * 20 19 18 22 22 O 1.21700 * 119.99254 * 179.87709 * 21 20 19 23 23 C 1.46670 * 120.00362 * 359.87685 * 21 20 19 24 24 C 1.37871 * 126.23558 * 209.50752 * 23 21 20 25 25 C 1.39835 * 107.08901 * 179.97438 * 24 23 21 26 26 C 1.35449 * 107.86106 * 0.02562 * 25 24 23 27 27 N 1.35528 * 108.87610 * 359.72931 * 26 25 24 28 28 H 0.97004 * 125.68418 * 180.30692 * 27 26 25 29 29 C 1.46918 * 118.73762 * 306.38063 * 20 19 18 30 30 C 1.53043 * 109.45783 * 299.95164 * 17 15 14 31 31 C 1.53094 * 109.42801 * 298.86378 * 15 14 13 32 32 H 0.97003 * 119.99245 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99719 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.52610 * 296.79749 * 12 10 9 35 35 H 1.09007 * 109.52368 * 56.98833 * 12 10 9 36 36 H 1.09000 * 109.47842 * 62.37076 * 13 12 10 37 37 H 1.08992 * 109.48136 * 182.39887 * 13 12 10 38 38 H 1.09003 * 109.46157 * 179.97438 * 17 15 14 39 39 H 1.09003 * 109.49351 * 298.56304 * 18 17 15 40 40 H 1.08989 * 109.50075 * 58.66236 * 18 17 15 41 41 H 1.08999 * 109.59591 * 294.86251 * 19 18 17 42 42 H 1.09000 * 109.58019 * 174.43437 * 19 18 17 43 43 H 1.08001 * 126.45330 * 359.96635 * 24 23 21 44 44 H 1.08003 * 126.06684 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.56438 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.59232 * 293.82730 * 29 20 19 47 47 H 1.09000 * 109.59040 * 173.39785 * 29 20 19 48 48 H 1.08999 * 109.50242 * 301.33558 * 30 17 15 49 49 H 1.09008 * 109.49580 * 61.40402 * 30 17 15 50 50 H 1.08996 * 109.51882 * 177.50823 * 31 15 14 51 51 H 1.08999 * 109.52187 * 297.69567 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4700 -2.1375 -0.0005 9 7 3.3796 -1.2024 0.0000 10 6 4.1120 -2.4712 0.0000 11 1 3.5637 -3.2086 0.5863 12 6 4.2693 -2.9741 -1.4382 13 6 5.1022 -4.2586 -1.4332 14 8 6.3691 -4.0012 -0.8243 15 6 6.2862 -3.5730 0.5366 16 1 5.7773 -4.3350 1.1270 17 6 7.6960 -3.3558 1.0899 18 6 8.4097 -2.2854 0.2611 19 6 9.8080 -2.0458 0.8393 20 7 10.5184 -3.3301 0.9062 21 6 11.7327 -3.4734 0.3393 22 8 12.3118 -4.5419 0.4035 23 6 12.3562 -2.3418 -0.3550 24 6 13.2349 -2.4197 -1.4145 25 6 13.5765 -1.1091 -1.7623 26 6 12.9156 -0.2720 -0.9273 27 7 12.1662 -1.0083 -0.0710 28 1 11.5928 -0.6547 0.6269 29 6 9.8797 -4.4552 1.6023 30 6 8.4805 -4.6678 1.0158 31 6 5.5009 -2.2609 0.6106 32 1 -0.4849 0.8401 -0.0004 33 1 3.8646 -0.3624 0.0004 34 1 3.2862 -3.1790 -1.8621 35 1 4.7739 -2.2152 -2.0364 36 1 4.5778 -5.0296 -0.8686 37 1 5.2534 -4.5978 -2.4579 38 1 7.6324 -3.0288 2.1278 39 1 8.4959 -2.6227 -0.7718 40 1 7.8383 -1.3580 0.2950 41 1 9.7221 -1.6231 1.8403 42 1 10.3564 -1.3579 0.1958 43 1 13.5922 -3.3229 -1.8868 44 1 14.2486 -0.8163 -2.5553 45 1 12.9730 0.8063 -0.9439 46 1 9.7996 -4.2291 2.6656 47 1 10.4754 -5.3573 1.4623 48 1 7.9594 -5.4361 1.5871 49 1 8.5655 -4.9826 -0.0243 50 1 5.3987 -1.9559 1.6520 51 1 6.0303 -1.4877 0.0539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075383476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:40 Heat of formation + Delta-G solvation = -33.498978 kcal Electronic energy + Delta-G solvation = -31402.283440 eV Core-core repulsion = 27301.984035 eV Total energy + Delta-G solvation = -4100.299405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49679 -41.05343 -40.19335 -38.34940 -36.87241 -34.86928 -34.14294 -32.78220 -31.80973 -31.66371 -31.13828 -30.04701 -27.24266 -25.80495 -24.61305 -24.21714 -23.89739 -22.33488 -21.84715 -21.27028 -21.08093 -20.65301 -19.62550 -18.85671 -17.61284 -17.20709 -16.83547 -16.59005 -16.51411 -16.40506 -15.89027 -15.57503 -15.35191 -15.09756 -15.00494 -14.86264 -14.72848 -14.59378 -14.53799 -14.13698 -13.96239 -13.68591 -13.58720 -13.25014 -13.19160 -13.06824 -12.92845 -12.59450 -12.48063 -12.28656 -12.21564 -11.95854 -11.85596 -11.79318 -11.59823 -11.36998 -11.19336 -11.00038 -10.92999 -10.40945 -9.94983 -9.80135 -9.33370 -9.15423 -8.03451 -5.37337 0.50350 1.36112 1.40826 1.48169 1.74149 1.84324 2.09055 2.42940 2.47728 2.87711 3.27488 3.40143 3.48885 3.69561 3.74871 3.85714 4.01835 4.04125 4.15031 4.20220 4.30765 4.33551 4.33763 4.37747 4.39715 4.46023 4.50096 4.55193 4.63532 4.71350 4.74797 4.79454 4.83024 4.84756 4.95461 4.99715 5.07495 5.12712 5.17179 5.22489 5.25861 5.34168 5.45665 5.47814 5.52297 5.75135 5.76398 5.93047 6.20408 6.26186 6.35346 6.52278 6.99920 7.06583 7.82287 8.02199 9.18121 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.002560 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.831804 B =10934.696451 C =12113.820899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.246 1.246 7 C -0.230 4.230 8 H 0.053 0.947 9 N -0.749 5.749 10 C 0.174 3.826 11 H 0.039 0.961 12 C -0.164 4.164 13 C 0.072 3.928 14 O -0.383 6.383 15 C 0.102 3.898 16 H 0.063 0.937 17 C -0.071 4.071 18 C -0.124 4.124 19 C 0.087 3.913 20 N -0.603 5.603 21 C 0.584 3.416 22 O -0.579 6.579 23 C -0.077 4.077 24 C -0.134 4.134 25 C -0.226 4.226 26 C 0.037 3.963 27 N -0.531 5.531 28 H 0.432 0.568 29 C 0.112 3.888 30 C -0.118 4.118 31 C -0.147 4.147 32 H 0.257 0.743 33 H 0.366 0.634 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.212 0.788 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.054 0.946 50 H 0.080 0.920 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.809 -1.986 2.494 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.361 4.361 8 H 0.071 0.929 9 N -0.392 5.392 10 C 0.066 3.934 11 H 0.057 0.943 12 C -0.204 4.204 13 C -0.005 4.005 14 O -0.303 6.303 15 C 0.044 3.956 16 H 0.080 0.920 17 C -0.089 4.089 18 C -0.162 4.162 19 C -0.035 4.035 20 N -0.335 5.335 21 C 0.374 3.626 22 O -0.459 6.459 23 C -0.189 4.189 24 C -0.161 4.161 25 C -0.250 4.250 26 C -0.099 4.099 27 N -0.134 5.134 28 H 0.277 0.723 29 C -0.010 4.010 30 C -0.156 4.156 31 C -0.185 4.185 32 H 0.066 0.934 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.151 0.849 44 H 0.177 0.823 45 H 0.229 0.771 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.928 -2.633 2.628 28.175 hybrid contribution -1.029 0.943 -0.054 1.397 sum 26.899 -1.690 2.574 27.075 Atomic orbital electron populations 1.69896 1.07255 1.26676 1.59769 1.25545 0.96131 1.01424 1.02721 0.85377 0.78826 0.79401 0.77974 1.20769 1.22402 1.17015 1.19001 0.82692 0.93254 1.41116 0.92893 1.42764 1.02342 1.03842 1.90237 1.20422 0.91833 0.87246 0.93940 0.94285 1.22737 0.99616 0.98526 0.99562 1.22515 0.84087 0.95070 0.98859 1.87875 1.28795 1.87290 1.26301 1.22124 0.96126 0.94166 0.83218 0.91951 1.21203 0.91630 0.95732 1.00349 1.21897 0.94755 0.99869 0.99648 1.22446 0.93233 0.84482 1.03379 1.48137 1.16969 1.14004 1.54408 1.17461 0.81016 0.86665 0.77439 1.90793 1.64553 1.29195 1.61397 1.20140 1.09396 0.83782 1.05612 1.21487 0.98354 0.99180 0.97085 1.21198 1.07217 0.91599 1.04981 1.22760 0.95540 0.99280 0.92364 1.42746 1.36764 1.04523 1.29339 0.72324 1.21722 0.93271 0.89413 0.96574 1.21827 0.94360 0.97708 1.01718 1.22489 0.94659 0.99236 1.02090 0.93398 0.80095 0.93251 0.92365 0.92922 0.88047 0.87581 0.92604 0.89311 0.87933 0.88560 0.84855 0.82311 0.77133 0.88997 0.90525 0.89333 0.92759 0.90158 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.55 13.97 21.65 0.30 -62.25 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 44.06 27.74 68.60 1.90 45.97 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.25 -9.90 6.52 99.48 0.65 -9.25 16 7 C -0.23 -12.78 10.42 84.03 0.88 -11.90 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 N -0.75 -33.33 4.93 -322.38 -1.59 -34.92 16 10 C 0.17 6.13 2.86 45.11 0.13 6.26 16 11 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.16 -5.39 5.73 30.68 0.18 -5.21 16 13 C 0.07 1.86 6.84 72.01 0.49 2.36 16 14 O -0.38 -9.64 9.11 -148.98 -1.36 -11.00 16 15 C 0.10 2.20 2.38 30.63 0.07 2.27 16 16 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 17 C -0.07 -1.13 2.04 -10.77 -0.02 -1.15 16 18 C -0.12 -1.94 4.88 30.67 0.15 -1.79 16 19 C 0.09 1.04 5.57 86.36 0.48 1.52 16 20 N -0.60 -10.83 2.97 -823.60 -2.45 -13.27 16 21 C 0.58 14.02 7.63 86.44 0.66 14.68 16 22 O -0.58 -18.48 16.42 -4.35 -0.07 -18.55 16 23 C -0.08 -1.54 6.37 40.35 0.26 -1.28 16 24 C -0.13 -2.75 10.77 22.57 0.24 -2.51 16 25 C -0.23 -3.26 10.81 22.01 0.24 -3.02 16 26 C 0.04 0.36 11.89 83.48 0.99 1.35 16 27 N -0.53 -6.27 4.74 -183.63 -0.87 -7.14 16 28 H 0.43 2.70 6.47 -92.71 -0.60 2.10 16 29 C 0.11 1.87 6.43 86.37 0.56 2.43 16 30 C -0.12 -1.97 5.20 30.68 0.16 -1.81 16 31 C -0.15 -3.78 4.60 30.68 0.14 -3.64 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.37 15.44 5.66 -92.71 -0.53 14.91 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.18 7.73 -2.39 -0.02 1.16 16 40 H 0.09 1.30 6.31 -2.39 -0.02 1.28 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.99 3.88 -2.39 -0.01 0.98 16 43 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 47 H 0.08 1.59 7.00 -2.39 -0.02 1.58 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.05 1.19 7.73 -2.38 -0.02 1.17 16 50 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.08 1.90 6.28 -2.39 -0.02 1.88 16 Total: -1.00 -78.08 391.63 1.70 -76.38 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.23 Total: 29.66 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 6.07 Total: -4.88 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.61 Total: -117.58 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -1.43 Total: -29.55 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.97 kcal Total: -78.08 1.70 -76.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075383476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.882 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds