Wall clock time and date at job start Wed Apr 1 2020 04:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99697 * 2 1 4 4 H 1.48506 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47238 * 299.99770 * 3 2 1 6 6 H 1.48493 * 109.47001 * 59.99947 * 3 2 1 7 7 C 1.38809 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99868 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99867 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.54118 * 325.18141 * 10 9 7 12 12 C 1.53174 * 109.61564 * 85.39984 * 10 9 7 13 13 C 1.53100 * 109.16342 * 62.93193 * 12 10 9 14 14 O 1.42902 * 109.41403 * 57.60349 * 13 12 10 15 15 C 1.42904 * 114.09991 * 298.84573 * 14 13 12 16 16 H 1.08999 * 109.47939 * 301.16355 * 15 14 13 17 17 C 1.53003 * 109.47833 * 181.13911 * 15 14 13 18 18 C 1.53037 * 109.45655 * 180.02562 * 17 15 14 19 19 C 1.53195 * 109.31124 * 178.60037 * 18 17 15 20 20 N 1.46928 * 108.76262 * 54.65852 * 19 18 17 21 21 C 1.34780 * 120.63187 * 126.36002 * 20 19 18 22 22 O 1.21626 * 119.99926 * 176.30405 * 21 20 19 23 23 C 1.47256 * 119.99850 * 356.31132 * 21 20 19 24 24 C 1.46683 * 126.94712 * 42.05282 * 23 21 20 25 25 C 1.34483 * 106.33705 * 180.02562 * 24 23 21 26 26 N 1.36452 * 108.85671 * 0.02562 * 25 24 23 27 27 H 0.96999 * 124.85324 * 180.02562 * 26 25 24 28 28 C 1.34658 * 110.29567 * 359.73037 * 26 25 24 29 29 C 1.46929 * 118.74051 * 306.38130 * 20 19 18 30 30 C 1.53043 * 109.45811 * 59.97304 * 17 15 14 31 31 C 1.53089 * 109.41434 * 61.15870 * 15 14 13 32 32 H 0.97001 * 120.00132 * 0.02562 * 1 2 3 33 33 H 0.96991 * 120.00104 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.52470 * 182.83084 * 12 10 9 35 35 H 1.09000 * 109.52717 * 303.02530 * 12 10 9 36 36 H 1.09002 * 109.47560 * 297.62606 * 13 12 10 37 37 H 1.08992 * 109.48003 * 177.58740 * 13 12 10 38 38 H 1.08995 * 109.46168 * 300.00217 * 17 15 14 39 39 H 1.08993 * 109.49987 * 298.56522 * 18 17 15 40 40 H 1.08997 * 109.50248 * 58.66671 * 18 17 15 41 41 H 1.08999 * 109.59914 * 294.87221 * 19 18 17 42 42 H 1.09001 * 109.58472 * 174.43240 * 19 18 17 43 43 H 1.08002 * 126.83409 * 0.04028 * 24 23 21 44 44 H 1.08003 * 125.57857 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.80793 * 180.29984 * 28 26 25 46 46 H 1.08996 * 109.58843 * 293.82742 * 29 20 19 47 47 H 1.08995 * 109.58911 * 173.39762 * 29 20 19 48 48 H 1.09001 * 109.49489 * 301.33459 * 30 17 15 49 49 H 1.08999 * 109.49898 * 61.43416 * 30 17 15 50 50 H 1.08999 * 109.52682 * 62.29670 * 31 15 14 51 51 H 1.08997 * 109.52106 * 182.42313 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9707 -3.5508 -0.5870 12 6 2.4155 -4.0442 1.4377 13 6 1.1265 -4.2675 2.2330 14 8 0.3436 -5.2784 1.5948 15 6 -0.0599 -4.9504 0.2637 16 1 -0.6440 -4.0303 0.2773 17 6 -0.9112 -6.0869 -0.3059 18 6 -1.3426 -5.7355 -1.7316 19 6 -2.1652 -6.8905 -2.3113 20 7 -3.2792 -7.1819 -1.3986 21 6 -4.5487 -7.2073 -1.8506 22 8 -5.4552 -7.5156 -1.1007 23 6 -4.8381 -6.8620 -3.2526 24 6 -4.0758 -7.2717 -4.4369 25 6 -4.7006 -6.7271 -5.4960 26 7 -5.7803 -6.0188 -5.0548 27 1 -6.3948 -5.5319 -5.6259 28 6 -5.8745 -6.0978 -3.7139 29 6 -2.9831 -7.4447 0.0163 30 6 -2.1509 -6.2836 0.5698 31 6 1.1814 -4.7547 -0.6106 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3881 -0.0005 34 1 3.0036 -4.9619 1.4323 35 1 2.9933 -3.2428 1.8980 36 1 0.5581 -3.3383 2.2723 37 1 1.3747 -4.5851 3.2457 38 1 -0.3267 -7.0068 -0.3197 39 1 -1.9482 -4.8294 -1.7156 40 1 -0.4594 -5.5725 -2.3492 41 1 -1.5348 -7.7739 -2.4121 42 1 -2.5577 -6.6057 -3.2875 43 1 -3.1893 -7.8883 -4.4550 44 1 -4.3975 -6.8329 -6.5272 45 1 -6.6376 -5.6350 -3.1057 46 1 -2.4192 -8.3733 0.1053 47 1 -3.9150 -7.5256 0.5758 48 1 -1.8429 -6.5108 1.5904 49 1 -2.7488 -5.3723 0.5639 50 1 1.7447 -5.6866 -0.6575 51 1 0.8766 -4.4624 -1.6155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075390720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:53 Heat of formation + Delta-G solvation = -25.208165 kcal Electronic energy + Delta-G solvation = -31584.844257 eV Core-core repulsion = 27484.904369 eV Total energy + Delta-G solvation = -4099.939888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.39471 -39.92657 -38.99030 -37.06842 -34.80675 -33.61241 -32.22329 -31.81656 -30.49423 -29.76519 -29.31069 -29.00971 -25.91089 -24.18906 -23.45245 -23.04602 -22.85839 -21.45579 -20.93431 -20.09646 -19.19904 -18.76941 -18.23789 -17.23430 -16.44180 -15.80506 -15.67118 -15.47220 -15.13254 -14.85580 -14.29904 -14.16766 -14.08866 -13.96312 -13.91063 -13.57985 -13.49453 -13.43874 -13.14586 -12.88891 -12.86851 -12.39520 -12.16765 -12.10254 -11.91136 -11.41296 -11.24395 -11.15755 -10.91540 -10.80577 -10.63131 -10.56942 -10.36161 -10.17229 -9.99474 -9.88845 -9.84823 -9.47609 -9.01860 -8.95627 -8.71047 -8.64845 -8.46434 -6.98716 -5.79736 -3.08440 1.78337 2.21658 2.84230 3.14377 3.34300 3.40471 3.46556 3.48505 4.16461 4.56808 4.61642 4.78349 4.83770 4.89685 4.95757 5.14145 5.15429 5.25436 5.35491 5.41496 5.47453 5.50841 5.56159 5.59909 5.63529 5.70524 5.75624 5.77557 5.79487 5.83615 5.90083 5.97071 6.04613 6.05847 6.13499 6.26369 6.28039 6.35715 6.43808 6.47622 6.54810 6.60402 6.68339 6.72533 6.76631 6.87369 6.89278 7.18909 7.48774 7.68269 7.79940 8.28445 8.38849 9.50126 10.07265 10.42170 11.42886 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002810 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.246412 B = 9961.765649 C =11417.876630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.170 4.170 13 C 0.070 3.930 14 O -0.387 6.387 15 C 0.101 3.899 16 H 0.063 0.937 17 C -0.075 4.075 18 C -0.131 4.131 19 C 0.099 3.901 20 N -0.603 5.603 21 C 0.593 3.407 22 O -0.554 6.554 23 C -0.226 4.226 24 C -0.174 4.174 25 C -0.014 4.014 26 N -0.555 5.555 27 H 0.418 0.582 28 C 0.064 3.936 29 C 0.113 3.887 30 C -0.125 4.125 31 C -0.152 4.152 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -16.354 -9.265 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.062 3.938 11 H 0.067 0.933 12 C -0.210 4.210 13 C -0.007 4.007 14 O -0.307 6.307 15 C 0.043 3.957 16 H 0.081 0.919 17 C -0.093 4.093 18 C -0.169 4.169 19 C -0.023 4.023 20 N -0.335 5.335 21 C 0.382 3.618 22 O -0.433 6.433 23 C -0.236 4.236 24 C -0.198 4.198 25 C -0.142 4.142 26 N -0.149 5.149 27 H 0.254 0.746 28 C -0.071 4.071 29 C -0.009 4.009 30 C -0.163 4.163 31 C -0.190 4.190 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.165 0.835 44 H 0.186 0.814 45 H 0.191 0.809 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.956 -16.489 -8.884 20.350 hybrid contribution 0.247 1.598 -0.327 1.650 sum -7.709 -14.891 -9.211 19.131 Atomic orbital electron populations 1.69663 1.05077 1.25524 1.57833 1.24720 0.95476 0.97609 1.03066 0.86154 0.78803 0.84286 0.77173 1.20596 1.21928 1.21911 1.19284 0.91015 0.84126 1.42471 0.91182 1.42503 1.05706 0.99715 1.88567 1.20249 0.94501 0.86260 0.92779 0.93280 1.22758 0.97692 1.00295 1.00304 1.22419 0.91871 0.91583 0.94789 1.87752 1.71388 1.44014 1.27527 1.21971 0.94234 0.96890 0.82615 0.91927 1.21095 0.95575 0.98488 0.94185 1.22007 1.00320 0.98685 0.95923 1.22120 0.87952 0.97858 0.94419 1.47944 1.06123 1.69682 1.09785 1.17478 0.81952 0.76204 0.86154 1.90757 1.44999 1.49274 1.58275 1.20312 1.00624 1.09703 0.92942 1.22050 1.01609 1.05592 0.90558 1.21803 0.91602 1.01219 0.99623 1.41613 1.24491 1.41735 1.07074 0.74595 1.21728 0.99901 1.01980 0.83523 1.21633 1.00654 0.97736 0.80876 1.21903 0.95887 0.98554 0.99980 1.22475 0.97470 0.99217 0.99880 0.93579 0.78260 0.93044 0.91243 0.92178 0.90497 0.90719 0.90964 0.90064 0.91645 0.87872 0.83451 0.81361 0.80928 0.91705 0.89181 0.89805 0.91543 0.91820 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.45 4.45 -53.25 -0.24 -17.69 16 10 C 0.17 3.36 3.13 -67.75 -0.21 3.15 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.17 -3.05 5.81 -26.59 -0.15 -3.20 16 13 C 0.07 1.24 6.68 37.21 0.25 1.49 16 14 O -0.39 -6.64 9.71 -35.23 -0.34 -6.98 16 15 C 0.10 1.63 2.05 -26.68 -0.05 1.57 16 16 H 0.06 1.20 6.72 -51.93 -0.35 0.85 16 17 C -0.07 -0.98 1.95 -90.58 -0.18 -1.16 16 18 C -0.13 -1.57 5.04 -26.61 -0.13 -1.70 16 19 C 0.10 1.03 5.77 -3.71 -0.02 1.01 16 20 N -0.60 -7.58 2.97 -174.09 -0.52 -8.10 16 21 C 0.59 8.45 7.61 -12.59 -0.10 8.35 16 22 O -0.55 -9.68 16.52 5.25 0.09 -9.60 16 23 C -0.23 -2.64 5.47 -103.35 -0.57 -3.20 16 24 C -0.17 -1.58 8.63 -37.50 -0.32 -1.90 16 25 C -0.01 -0.10 11.89 -16.82 -0.20 -0.30 16 26 N -0.55 -3.73 5.90 -12.84 -0.08 -3.80 16 27 H 0.42 1.41 8.96 -40.82 -0.37 1.05 16 28 C 0.06 0.62 11.87 -16.84 -0.20 0.42 16 29 C 0.11 1.40 6.42 -3.71 -0.02 1.38 16 30 C -0.13 -1.64 5.23 -26.61 -0.14 -1.78 16 31 C -0.15 -2.47 4.65 -26.59 -0.12 -2.59 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.38 9.85 6.27 -40.82 -0.26 9.59 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.92 6.42 -51.93 -0.33 0.58 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.00 4.07 -51.93 -0.21 0.79 16 43 H 0.15 1.12 7.20 -52.49 -0.38 0.74 16 44 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.22 7.02 -51.93 -0.36 0.85 16 48 H 0.08 1.12 7.64 -51.93 -0.40 0.72 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -33.78 393.34 -9.89 -43.67 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -8.01 Total: 11.93 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.42 Total: -5.51 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.11 Total: -56.51 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.26 Total: -16.58 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.78 -9.89 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075390720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.460 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds