Wall clock time and date at job start Wed Apr 1 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99697 * 2 1 4 4 H 1.48506 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47238 * 299.99770 * 3 2 1 6 6 H 1.48493 * 109.47001 * 59.99947 * 3 2 1 7 7 C 1.38809 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99868 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99867 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.54118 * 325.18141 * 10 9 7 12 12 C 1.53174 * 109.61564 * 85.39984 * 10 9 7 13 13 C 1.53100 * 109.16342 * 62.93193 * 12 10 9 14 14 O 1.42902 * 109.41403 * 57.60349 * 13 12 10 15 15 C 1.42904 * 114.09991 * 298.84573 * 14 13 12 16 16 H 1.08999 * 109.47939 * 301.16355 * 15 14 13 17 17 C 1.53003 * 109.47833 * 181.13911 * 15 14 13 18 18 C 1.53037 * 109.45655 * 180.02562 * 17 15 14 19 19 C 1.53195 * 109.31124 * 178.60037 * 18 17 15 20 20 N 1.46928 * 108.76262 * 54.65852 * 19 18 17 21 21 C 1.34780 * 120.63187 * 126.36002 * 20 19 18 22 22 O 1.21626 * 119.99926 * 176.30405 * 21 20 19 23 23 C 1.47256 * 119.99850 * 356.31132 * 21 20 19 24 24 C 1.46683 * 126.94712 * 42.05282 * 23 21 20 25 25 C 1.34483 * 106.33705 * 180.02562 * 24 23 21 26 26 N 1.36452 * 108.85671 * 0.02562 * 25 24 23 27 27 H 0.96999 * 124.85324 * 180.02562 * 26 25 24 28 28 C 1.34658 * 110.29567 * 359.73037 * 26 25 24 29 29 C 1.46929 * 118.74051 * 306.38130 * 20 19 18 30 30 C 1.53043 * 109.45811 * 59.97304 * 17 15 14 31 31 C 1.53089 * 109.41434 * 61.15870 * 15 14 13 32 32 H 0.97001 * 120.00132 * 0.02562 * 1 2 3 33 33 H 0.96991 * 120.00104 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.52470 * 182.83084 * 12 10 9 35 35 H 1.09000 * 109.52717 * 303.02530 * 12 10 9 36 36 H 1.09002 * 109.47560 * 297.62606 * 13 12 10 37 37 H 1.08992 * 109.48003 * 177.58740 * 13 12 10 38 38 H 1.08995 * 109.46168 * 300.00217 * 17 15 14 39 39 H 1.08993 * 109.49987 * 298.56522 * 18 17 15 40 40 H 1.08997 * 109.50248 * 58.66671 * 18 17 15 41 41 H 1.08999 * 109.59914 * 294.87221 * 19 18 17 42 42 H 1.09001 * 109.58472 * 174.43240 * 19 18 17 43 43 H 1.08002 * 126.83409 * 0.04028 * 24 23 21 44 44 H 1.08003 * 125.57857 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.80793 * 180.29984 * 28 26 25 46 46 H 1.08996 * 109.58843 * 293.82742 * 29 20 19 47 47 H 1.08995 * 109.58911 * 173.39762 * 29 20 19 48 48 H 1.09001 * 109.49489 * 301.33459 * 30 17 15 49 49 H 1.08999 * 109.49898 * 61.43416 * 30 17 15 50 50 H 1.08999 * 109.52682 * 62.29670 * 31 15 14 51 51 H 1.08997 * 109.52106 * 182.42313 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9707 -3.5508 -0.5870 12 6 2.4155 -4.0442 1.4377 13 6 1.1265 -4.2675 2.2330 14 8 0.3436 -5.2784 1.5948 15 6 -0.0599 -4.9504 0.2637 16 1 -0.6440 -4.0303 0.2773 17 6 -0.9112 -6.0869 -0.3059 18 6 -1.3426 -5.7355 -1.7316 19 6 -2.1652 -6.8905 -2.3113 20 7 -3.2792 -7.1819 -1.3986 21 6 -4.5487 -7.2073 -1.8506 22 8 -5.4552 -7.5156 -1.1007 23 6 -4.8381 -6.8620 -3.2526 24 6 -4.0758 -7.2717 -4.4369 25 6 -4.7006 -6.7271 -5.4960 26 7 -5.7803 -6.0188 -5.0548 27 1 -6.3948 -5.5319 -5.6259 28 6 -5.8745 -6.0978 -3.7139 29 6 -2.9831 -7.4447 0.0163 30 6 -2.1509 -6.2836 0.5698 31 6 1.1814 -4.7547 -0.6106 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3881 -0.0005 34 1 3.0036 -4.9619 1.4323 35 1 2.9933 -3.2428 1.8980 36 1 0.5581 -3.3383 2.2723 37 1 1.3747 -4.5851 3.2457 38 1 -0.3267 -7.0068 -0.3197 39 1 -1.9482 -4.8294 -1.7156 40 1 -0.4594 -5.5725 -2.3492 41 1 -1.5348 -7.7739 -2.4121 42 1 -2.5577 -6.6057 -3.2875 43 1 -3.1893 -7.8883 -4.4550 44 1 -4.3975 -6.8329 -6.5272 45 1 -6.6376 -5.6350 -3.1057 46 1 -2.4192 -8.3733 0.1053 47 1 -3.9150 -7.5256 0.5758 48 1 -1.8429 -6.5108 1.5904 49 1 -2.7488 -5.3723 0.5639 50 1 1.7447 -5.6866 -0.6575 51 1 0.8766 -4.4624 -1.6155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075390720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:52 Heat of formation + Delta-G solvation = -46.990331 kcal Electronic energy + Delta-G solvation = -31585.788803 eV Core-core repulsion = 27484.904369 eV Total energy + Delta-G solvation = -4100.884434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10667 -41.05063 -40.21606 -38.23220 -36.51472 -34.75778 -34.05154 -32.78312 -31.37967 -31.02788 -30.78336 -30.00769 -27.11849 -25.79557 -25.03552 -24.19614 -24.02598 -22.55239 -21.56814 -21.14902 -20.32474 -19.88536 -19.26384 -19.08219 -17.50540 -17.08149 -16.88761 -16.70016 -16.56181 -16.14378 -15.75354 -15.43472 -15.33963 -14.96570 -14.86582 -14.82478 -14.64651 -14.56367 -14.31925 -13.99715 -13.76433 -13.72539 -13.47099 -13.18386 -12.96261 -12.92859 -12.84675 -12.70172 -12.43867 -12.18437 -12.10782 -11.95760 -11.83274 -11.72802 -11.49743 -11.40878 -11.00721 -10.90690 -10.88568 -10.19739 -9.73364 -9.52293 -9.21823 -8.99461 -7.93871 -5.21634 0.95026 1.46174 1.46659 1.56318 1.59525 1.97384 2.37241 2.55771 2.56010 2.86168 3.39497 3.66601 3.73506 3.91611 3.93344 4.05300 4.14658 4.15743 4.20715 4.23266 4.30341 4.36564 4.39268 4.43443 4.45220 4.54009 4.58277 4.63470 4.70972 4.84857 4.87307 4.91428 4.95252 4.99470 5.02089 5.08631 5.09350 5.15124 5.18524 5.25010 5.29012 5.31733 5.40255 5.49803 5.55098 5.65055 5.81415 6.02257 6.28376 6.39313 6.49087 6.72823 7.24967 7.34598 8.11002 8.33918 9.29726 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002810 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.246412 B = 9961.765649 C =11417.876630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.733 5.733 10 C 0.161 3.839 11 H 0.049 0.951 12 C -0.162 4.162 13 C 0.073 3.927 14 O -0.385 6.385 15 C 0.104 3.896 16 H 0.023 0.977 17 C -0.065 4.065 18 C -0.126 4.126 19 C 0.103 3.897 20 N -0.603 5.603 21 C 0.584 3.416 22 O -0.600 6.600 23 C -0.262 4.262 24 C -0.190 4.190 25 C 0.000 4.000 26 N -0.540 5.540 27 H 0.434 0.566 28 C 0.055 3.945 29 C 0.116 3.884 30 C -0.118 4.118 31 C -0.142 4.142 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.162 0.838 44 H 0.207 0.793 45 H 0.176 0.824 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.038 0.962 50 H 0.095 0.905 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 -18.140 -11.264 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.053 3.947 11 H 0.067 0.933 12 C -0.202 4.202 13 C -0.003 4.003 14 O -0.304 6.304 15 C 0.046 3.954 16 H 0.041 0.959 17 C -0.084 4.084 18 C -0.164 4.164 19 C -0.019 4.019 20 N -0.334 5.334 21 C 0.375 3.625 22 O -0.483 6.483 23 C -0.272 4.272 24 C -0.214 4.214 25 C -0.128 4.128 26 N -0.136 5.136 27 H 0.274 0.726 28 C -0.082 4.082 29 C -0.006 4.006 30 C -0.156 4.156 31 C -0.180 4.180 32 H 0.057 0.943 33 H 0.204 0.796 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.180 0.820 44 H 0.223 0.777 45 H 0.193 0.807 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.057 0.943 50 H 0.113 0.887 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.088 -18.297 -10.913 22.157 hybrid contribution -0.300 2.120 0.288 2.161 sum -6.388 -16.176 -10.625 20.381 Atomic orbital electron populations 1.69825 1.06587 1.25722 1.60022 1.25477 0.96233 1.00834 1.04178 0.85151 0.78351 0.80298 0.76462 1.18999 1.22219 1.22495 1.19648 0.91377 0.85256 1.40221 0.90684 1.42682 1.05339 1.00816 1.88516 1.20546 0.94656 0.85426 0.94114 0.93339 1.22641 0.97759 1.01086 0.98709 1.22364 0.91300 0.90348 0.96308 1.87764 1.71266 1.43352 1.28016 1.21965 0.94316 0.96606 0.82505 0.95929 1.21067 0.94938 0.97974 0.94403 1.21969 1.00644 0.98265 0.95533 1.22271 0.87249 0.98173 0.94172 1.48064 1.06403 1.68926 1.10029 1.17989 0.81853 0.75491 0.87125 1.90714 1.46307 1.51565 1.59740 1.20366 1.02656 1.11806 0.92366 1.22265 1.02509 1.06705 0.89913 1.22402 0.90415 0.99214 1.00812 1.41655 1.24640 1.41108 1.06189 0.72593 1.21845 0.99594 1.01863 0.84913 1.21586 0.99923 0.98150 0.80927 1.21802 0.95845 0.97735 1.00212 1.22392 0.96936 0.99202 0.99429 0.94262 0.79600 0.89981 0.92787 0.96035 0.87983 0.88437 0.93775 0.88668 0.88854 0.86815 0.82048 0.77654 0.80686 0.89371 0.90910 0.89918 0.94271 0.88700 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.73 -35.94 4.45 -322.38 -1.44 -37.38 16 10 C 0.16 6.12 3.13 45.11 0.14 6.26 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.16 -5.56 5.81 30.69 0.18 -5.38 16 13 C 0.07 2.56 6.68 72.02 0.48 3.05 16 14 O -0.38 -12.78 9.71 -148.98 -1.45 -14.23 16 15 C 0.10 3.32 2.05 30.63 0.06 3.38 16 16 H 0.02 0.91 6.72 -2.39 -0.02 0.90 16 17 C -0.07 -1.62 1.95 -10.77 -0.02 -1.65 16 18 C -0.13 -2.87 5.04 30.67 0.15 -2.72 16 19 C 0.10 1.94 5.77 86.36 0.50 2.44 16 20 N -0.60 -14.98 2.97 -822.95 -2.45 -17.43 16 21 C 0.58 17.10 7.61 86.61 0.66 17.76 16 22 O -0.60 -22.13 16.52 -4.11 -0.07 -22.19 16 23 C -0.26 -6.05 5.47 -19.04 -0.10 -6.16 16 24 C -0.19 -3.06 8.63 23.62 0.20 -2.85 16 25 C 0.00 0.00 11.89 83.11 0.99 0.99 16 26 N -0.54 -6.18 5.90 -194.55 -1.15 -7.33 16 27 H 0.43 1.92 8.96 -92.71 -0.83 1.09 16 28 C 0.06 1.04 11.87 83.92 1.00 2.04 16 29 C 0.12 2.87 6.42 86.36 0.55 3.42 16 30 C -0.12 -3.13 5.23 30.67 0.16 -2.97 16 31 C -0.14 -4.33 4.65 30.68 0.14 -4.19 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.37 19.89 6.27 -92.71 -0.58 19.30 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.92 6.42 -2.39 -0.02 1.91 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.98 4.07 -2.39 -0.01 1.97 16 43 H 0.16 1.99 7.20 -2.91 -0.02 1.97 16 44 H 0.21 0.65 8.06 -2.91 -0.02 0.63 16 45 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 48 H 0.08 2.20 7.64 -2.39 -0.02 2.19 16 49 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.07 2.28 6.54 -2.39 -0.02 2.27 16 Total: -1.00 -76.38 393.34 1.71 -74.67 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.46 Total: 37.20 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 6.40 Total: -2.24 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.75 Total: -121.23 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.51 Total: -36.42 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.38 1.71 -74.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075390720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.682 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds