Wall clock time and date at job start Wed Apr 1 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99913 * 2 1 4 4 H 1.48505 * 109.46875 * 239.99961 * 3 2 1 5 5 H 1.48498 * 109.46867 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46910 * 120.00429 * 3 2 1 7 7 C 1.38812 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99978 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.53790 * 35.18062 * 10 9 7 12 12 C 1.53174 * 109.54435 * 274.99946 * 10 9 7 13 13 C 1.53089 * 109.16254 * 297.02660 * 12 10 9 14 14 O 1.42904 * 109.41566 * 302.39053 * 13 12 10 15 15 C 1.42904 * 114.09697 * 61.15953 * 14 13 12 16 16 H 1.08995 * 109.48064 * 58.83419 * 15 14 13 17 17 C 1.53002 * 109.47990 * 178.86163 * 15 14 13 18 18 C 1.53037 * 109.45721 * 299.99870 * 17 15 14 19 19 C 1.53199 * 109.30874 * 178.61599 * 18 17 15 20 20 N 1.46925 * 108.77319 * 54.63738 * 19 18 17 21 21 C 1.34784 * 120.62983 * 126.37280 * 20 19 18 22 22 O 1.21626 * 119.99755 * 353.72280 * 21 20 19 23 23 C 1.47259 * 119.99817 * 173.72641 * 21 20 19 24 24 C 1.46688 * 126.94118 * 332.75413 * 23 21 20 25 25 C 1.34486 * 106.32973 * 179.97438 * 24 23 21 26 26 N 1.36445 * 108.85969 * 359.97438 * 25 24 23 27 27 H 0.96996 * 124.85489 * 180.02562 * 26 25 24 28 28 C 1.34665 * 110.29710 * 359.75189 * 26 25 24 29 29 C 1.46924 * 118.74034 * 306.38763 * 20 19 18 30 30 C 1.53041 * 109.45824 * 179.97438 * 17 15 14 31 31 C 1.53089 * 109.41310 * 298.84372 * 15 14 13 32 32 H 0.96999 * 120.00523 * 359.97438 * 1 2 3 33 33 H 0.96994 * 119.99699 * 359.97438 * 9 7 2 34 34 H 1.08993 * 109.52010 * 177.12021 * 12 10 9 35 35 H 1.09004 * 109.52234 * 56.92944 * 12 10 9 36 36 H 1.09005 * 109.48273 * 182.40623 * 13 12 10 37 37 H 1.09000 * 109.49124 * 62.37789 * 13 12 10 38 38 H 1.09004 * 109.44945 * 59.96454 * 17 15 14 39 39 H 1.08995 * 109.49837 * 58.66535 * 18 17 15 40 40 H 1.09005 * 109.49928 * 298.56651 * 18 17 15 41 41 H 1.09003 * 109.57996 * 174.42192 * 19 18 17 42 42 H 1.09001 * 109.58562 * 294.84449 * 19 18 17 43 43 H 1.08000 * 126.83945 * 359.95547 * 24 23 21 44 44 H 1.08001 * 125.57435 * 180.02562 * 25 24 23 45 45 H 1.07997 * 125.80264 * 180.29382 * 28 26 25 46 46 H 1.09004 * 109.58376 * 293.82678 * 29 20 19 47 47 H 1.08993 * 109.58906 * 173.40246 * 29 20 19 48 48 H 1.09004 * 109.49897 * 301.33571 * 30 17 15 49 49 H 1.08997 * 109.50109 * 61.43329 * 30 17 15 50 50 H 1.09003 * 109.52553 * 177.51682 * 31 15 14 51 51 H 1.09001 * 109.52685 * 297.70020 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9679 -3.5530 0.5895 12 6 2.4221 -4.0371 -1.4401 13 6 1.1369 -4.2575 -2.2422 14 8 0.3520 -5.2721 -1.6125 15 6 -0.0577 -4.9509 -0.2817 16 1 -0.6425 -4.0312 -0.2934 17 6 -0.9107 -6.0909 0.2787 18 6 -2.1465 -6.2839 -0.6031 19 6 -2.9802 -7.4483 -0.0589 20 7 -3.2824 -7.1929 1.3560 21 6 -4.5537 -7.2215 1.8027 22 8 -5.4722 -7.3466 1.0154 23 6 -4.8305 -7.1011 3.2441 24 6 -3.9445 -7.4879 4.3472 25 6 -4.6056 -7.1992 5.4822 26 7 -5.8209 -6.6680 5.1619 27 1 -6.4858 -6.3772 5.8054 28 6 -5.9629 -6.5997 3.8245 29 6 -2.1724 -6.9054 2.2747 30 6 -1.3487 -5.7467 1.7041 31 6 1.1795 -4.7584 0.5992 32 1 -0.4851 0.8400 0.0004 33 1 0.3555 -2.3881 0.0002 34 1 3.0110 -4.9542 -1.4365 35 1 3.0013 -3.2329 -1.8940 36 1 1.3898 -4.5700 -3.2554 37 1 0.5678 -3.3286 -2.2797 38 1 -0.3254 -7.0104 0.2900 39 1 -1.8343 -6.5056 -1.6235 40 1 -2.7451 -5.3729 -0.5950 41 1 -3.9098 -7.5268 -0.6227 42 1 -2.4154 -8.3761 -0.1504 43 1 -2.9577 -7.9191 4.2646 44 1 -4.2349 -7.3606 6.4837 45 1 -6.8253 -6.2163 3.2995 46 1 -1.5418 -7.7890 2.3736 47 1 -2.5689 -6.6259 3.2508 48 1 -0.4683 -5.5859 2.3265 49 1 -1.9550 -4.8410 1.6898 50 1 0.8701 -4.4701 1.6038 51 1 1.7433 -5.6901 0.6441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075390721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:57 Heat of formation + Delta-G solvation = -22.106258 kcal Electronic energy + Delta-G solvation = -31549.579169 eV Core-core repulsion = 27449.773790 eV Total energy + Delta-G solvation = -4099.805379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42847 -39.92084 -38.97893 -37.05957 -34.79636 -33.63366 -32.22531 -31.85028 -30.45740 -29.76004 -29.32523 -28.99931 -25.91826 -24.18185 -23.46235 -23.03225 -22.88438 -21.45835 -20.94574 -20.09586 -19.23335 -18.76036 -18.19826 -17.21846 -16.37767 -15.79249 -15.67196 -15.45921 -15.19364 -14.84410 -14.31252 -14.18378 -14.09816 -13.96054 -13.93799 -13.58187 -13.46727 -13.44748 -13.11897 -12.86200 -12.82796 -12.40999 -12.21306 -12.03105 -11.90252 -11.40399 -11.21987 -11.14758 -10.87651 -10.79979 -10.61311 -10.55301 -10.35045 -10.20339 -9.99971 -9.86969 -9.82228 -9.46216 -9.00107 -8.99162 -8.70516 -8.65895 -8.45412 -6.97626 -5.78132 -3.07002 1.69458 2.18013 2.85855 3.17569 3.42207 3.42972 3.47068 3.47876 4.17330 4.57934 4.61818 4.76797 4.84267 4.88777 4.94603 5.14621 5.15666 5.22819 5.36033 5.41710 5.48065 5.50701 5.56898 5.60814 5.62405 5.71377 5.74049 5.76933 5.79913 5.84078 5.91038 5.98114 6.05700 6.06496 6.14775 6.27393 6.29357 6.36765 6.44923 6.45735 6.56000 6.59185 6.68673 6.73156 6.77655 6.88309 6.90322 7.15944 7.50668 7.68366 7.81001 8.30476 8.40376 9.51405 10.08603 10.43533 11.44300 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011809 B = 0.002721 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.596646 B =10286.384186 C =11593.629630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.170 4.170 13 C 0.070 3.930 14 O -0.387 6.387 15 C 0.101 3.899 16 H 0.063 0.937 17 C -0.075 4.075 18 C -0.125 4.125 19 C 0.113 3.887 20 N -0.604 5.604 21 C 0.592 3.408 22 O -0.556 6.556 23 C -0.229 4.229 24 C -0.175 4.175 25 C -0.016 4.016 26 N -0.555 5.555 27 H 0.418 0.582 28 C 0.070 3.930 29 C 0.096 3.904 30 C -0.132 4.132 31 C -0.152 4.152 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.152 0.848 44 H 0.169 0.831 45 H 0.175 0.825 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 -17.712 9.584 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.062 3.938 11 H 0.067 0.933 12 C -0.210 4.210 13 C -0.007 4.007 14 O -0.307 6.307 15 C 0.043 3.957 16 H 0.081 0.919 17 C -0.093 4.093 18 C -0.163 4.163 19 C -0.009 4.009 20 N -0.337 5.337 21 C 0.382 3.618 22 O -0.436 6.436 23 C -0.239 4.239 24 C -0.199 4.199 25 C -0.144 4.144 26 N -0.149 5.149 27 H 0.254 0.746 28 C -0.066 4.066 29 C -0.026 4.026 30 C -0.170 4.170 31 C -0.190 4.190 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.169 0.831 44 H 0.186 0.814 45 H 0.192 0.808 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.130 -17.772 9.194 21.598 hybrid contribution 0.257 1.500 0.362 1.564 sum -7.873 -16.272 9.555 20.447 Atomic orbital electron populations 1.69639 1.05067 1.25769 1.57610 1.24720 0.95477 0.97601 1.03022 0.86296 0.78534 0.83706 0.77808 1.21328 1.21732 1.21330 1.19189 0.90943 0.84147 1.42790 0.91303 1.42486 1.05692 0.99683 1.88605 1.20249 0.94471 0.86271 0.92802 0.93319 1.22756 0.97705 1.00289 1.00291 1.22417 0.91861 0.91516 0.94863 1.87752 1.71195 1.44017 1.27715 1.21972 0.94196 0.96930 0.82622 0.91920 1.21095 0.95575 0.98461 0.94197 1.21897 0.95884 0.98592 0.99954 1.21631 1.00602 0.97696 0.80965 1.47883 1.06085 1.70030 1.09658 1.17445 0.82080 0.75442 0.86814 1.90751 1.44073 1.51425 1.57315 1.20352 0.97101 1.13766 0.92665 1.22216 1.00020 1.07009 0.90646 1.21834 0.86881 1.05793 0.99909 1.41643 1.16219 1.50035 1.07032 0.74608 1.21801 0.99596 1.02393 0.82801 1.22262 0.88120 0.97807 0.94437 1.22023 1.00297 0.98693 0.95995 1.22471 0.97490 0.99192 0.99867 0.93466 0.78254 0.93069 0.91243 0.90513 0.92166 0.90733 0.89864 0.91512 0.89154 0.91726 0.83100 0.81351 0.80773 0.91676 0.87612 0.90036 0.90948 0.90860 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.53 4.45 -53.25 -0.24 -17.77 16 10 C 0.17 3.38 3.13 -67.75 -0.21 3.17 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.17 -3.07 5.81 -26.59 -0.15 -3.22 16 13 C 0.07 1.25 6.68 37.20 0.25 1.50 16 14 O -0.39 -6.68 9.71 -35.23 -0.34 -7.02 16 15 C 0.10 1.64 2.05 -26.68 -0.05 1.58 16 16 H 0.06 1.21 6.72 -51.93 -0.35 0.86 16 17 C -0.07 -0.98 1.95 -90.58 -0.18 -1.16 16 18 C -0.13 -1.67 5.23 -26.61 -0.14 -1.81 16 19 C 0.11 1.41 6.44 -3.71 -0.02 1.39 16 20 N -0.60 -7.62 2.97 -174.09 -0.52 -8.13 16 21 C 0.59 8.45 7.64 -12.59 -0.10 8.36 16 22 O -0.56 -9.71 16.43 5.25 0.09 -9.63 16 23 C -0.23 -2.65 5.70 -103.35 -0.59 -3.23 16 24 C -0.17 -1.55 8.63 -37.50 -0.32 -1.88 16 25 C -0.02 -0.11 11.89 -16.83 -0.20 -0.31 16 26 N -0.55 -3.55 5.90 -12.85 -0.08 -3.63 16 27 H 0.42 1.25 8.96 -40.82 -0.37 0.88 16 28 C 0.07 0.66 11.79 -16.84 -0.20 0.46 16 29 C 0.10 1.00 5.27 -3.71 -0.02 0.98 16 30 C -0.13 -1.59 5.04 -26.61 -0.13 -1.72 16 31 C -0.15 -2.48 4.65 -26.59 -0.12 -2.60 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.38 9.90 6.28 -40.82 -0.26 9.65 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.12 7.64 -51.93 -0.40 0.73 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.15 1.12 6.50 -52.49 -0.34 0.78 16 44 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.11 1.02 4.03 -51.93 -0.21 0.81 16 48 H 0.08 0.92 6.42 -51.93 -0.33 0.58 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -33.90 392.19 -9.89 -43.79 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -7.97 Total: 11.94 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.44 Total: -5.60 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.11 Total: -56.56 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.26 Total: -16.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.90 -9.89 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075390721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.685 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds