Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48495 * 109.46791 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 299.99787 * 3 2 1 6 6 H 1.48496 * 109.46823 * 60.00083 * 3 2 1 7 7 C 1.38811 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99603 * 180.86931 * 7 2 1 9 9 N 1.36933 * 120.00508 * 0.86885 * 7 2 1 10 10 C 1.43434 * 120.54293 * 147.50822 * 9 7 2 11 11 C 1.54902 * 116.07832 * 271.54649 * 10 9 7 12 12 C 1.54844 * 110.14145 * 318.63609 * 11 10 9 13 13 C 1.50127 * 110.81164 * 321.13758 * 12 11 10 14 14 H 1.08999 * 110.37337 * 338.64008 * 13 12 11 15 15 C 1.53008 * 110.24560 * 216.65360 * 13 12 11 16 16 C 1.53044 * 109.45658 * 60.95777 * 15 13 12 17 17 C 1.53193 * 109.30622 * 181.38451 * 16 15 13 18 18 N 1.46925 * 108.77901 * 305.36080 * 17 16 15 19 19 C 1.34772 * 120.63420 * 233.58596 * 18 17 16 20 20 O 1.21492 * 120.00286 * 185.22323 * 19 18 17 21 21 C 1.48337 * 119.99941 * 5.22790 * 19 18 17 22 22 C 1.42268 * 126.94036 * 174.18056 * 21 19 18 23 23 C 1.35312 * 103.92157 * 179.97438 * 22 21 19 24 24 O 1.34017 * 106.67060 * 0.02562 * 23 22 21 25 25 N 1.20907 * 111.84446 * 359.97438 * 24 23 22 26 26 C 1.46922 * 118.73354 * 53.86738 * 18 17 16 27 27 C 1.53040 * 109.46005 * 181.02500 * 15 13 12 28 28 C 1.52524 * 105.41685 * 97.68235 * 13 12 11 29 29 C 1.46235 * 114.27926 * 270.58651 * 28 13 12 30 30 H 0.97002 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.09002 * 108.15456 * 33.25752 * 10 9 7 32 32 H 1.08993 * 108.16057 * 149.82455 * 10 9 7 33 33 H 1.08998 * 109.36048 * 78.84141 * 11 10 9 34 34 H 1.08995 * 109.35497 * 198.56700 * 11 10 9 35 35 H 1.08995 * 109.21115 * 200.78923 * 12 11 10 36 36 H 1.08998 * 109.21007 * 81.47669 * 12 11 10 37 37 H 1.08995 * 109.44938 * 300.99376 * 15 13 12 38 38 H 1.09002 * 109.49945 * 61.43853 * 16 15 13 39 39 H 1.08994 * 109.49983 * 301.33030 * 16 15 13 40 40 H 1.09006 * 109.58158 * 185.57387 * 17 16 15 41 41 H 1.09001 * 109.58933 * 65.15614 * 17 16 15 42 42 H 1.08006 * 128.03443 * 0.02562 * 22 21 19 43 43 H 1.07998 * 126.66466 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.59430 * 65.92270 * 26 18 17 45 45 H 1.09000 * 109.58730 * 186.35121 * 26 18 17 46 46 H 1.09003 * 109.49399 * 298.56555 * 27 15 13 47 47 H 1.08995 * 109.50021 * 58.66202 * 27 15 13 48 48 H 1.08997 * 108.52333 * 31.83432 * 28 13 12 49 49 H 1.09007 * 108.52356 * 149.50131 * 28 13 12 50 50 H 1.09003 * 109.84594 * 177.91722 * 29 28 13 51 51 H 1.08998 * 109.84699 * 298.84116 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0147 9 7 1.3256 -2.3880 -0.0169 10 6 1.8723 -3.5355 -0.6816 11 6 1.5304 -3.6783 -2.1857 12 6 0.0468 -3.3100 -2.4326 13 6 -0.8218 -3.8201 -1.3194 14 1 -0.3238 -4.6336 -0.7918 15 6 -2.1673 -4.2942 -1.8724 16 6 -1.9368 -5.4365 -2.8644 17 6 -3.2829 -5.8853 -3.4419 18 7 -4.1848 -6.2226 -2.3321 19 6 -4.7981 -7.4217 -2.2859 20 8 -5.6136 -7.6539 -1.4158 21 6 -4.4775 -8.4583 -3.2974 22 6 -4.9444 -9.8020 -3.3223 23 6 -4.3724 -10.3248 -4.4316 24 8 -3.6408 -9.3473 -4.9841 25 7 -3.7074 -8.3212 -4.3481 26 6 -4.4101 -5.2253 -1.2770 27 6 -3.0471 -4.7860 -0.7208 28 6 -1.0241 -2.6311 -0.3857 29 6 -0.0094 -2.5083 0.6601 30 1 -0.4850 0.8401 -0.0004 31 1 2.9571 -3.5012 -0.5815 32 1 1.5171 -4.4278 -0.1662 33 1 2.1693 -3.0128 -2.7662 34 1 1.7020 -4.7081 -2.4989 35 1 -0.2804 -3.7515 -3.3739 36 1 -0.0482 -2.2259 -2.4936 37 1 -2.6628 -3.4667 -2.3802 38 1 -1.4637 -6.2739 -2.3515 39 1 -1.2911 -5.0922 -3.6722 40 1 -3.1358 -6.7620 -4.0727 41 1 -3.7154 -5.0769 -4.0315 42 1 -5.6030 -10.2907 -2.6196 43 1 -4.4837 -11.3339 -4.8000 44 1 -4.9325 -4.3642 -1.6935 45 1 -5.0070 -5.6664 -0.4787 46 1 -2.5634 -5.6295 -0.2282 47 1 -3.1915 -3.9788 -0.0029 48 1 -1.0197 -1.7184 -0.9814 49 1 -1.9997 -2.7273 0.0911 50 1 -0.2018 -1.6186 1.2598 51 1 -0.0245 -3.3934 1.2961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075448203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = 65.767612 kcal Electronic energy + Delta-G solvation = -32024.525866 eV Core-core repulsion = 27928.530984 eV Total energy + Delta-G solvation = -4095.994882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.45288 -40.36094 -38.74503 -36.90839 -34.60400 -34.18783 -32.61540 -32.10312 -31.25837 -30.67618 -30.30207 -26.85561 -25.77493 -24.48534 -23.80676 -23.35093 -22.73928 -22.31580 -20.87528 -19.69566 -19.54323 -18.63221 -18.11870 -18.01869 -17.37690 -16.58201 -16.09334 -15.40008 -14.90355 -14.88396 -14.54348 -14.12872 -14.06004 -13.80154 -13.73591 -13.63452 -13.41780 -13.19862 -13.06126 -12.89917 -12.43524 -11.90569 -11.69724 -11.56260 -11.40373 -11.15305 -11.06461 -10.95003 -10.81091 -10.74841 -10.57198 -10.42972 -10.33257 -10.20560 -10.15001 -9.99610 -9.85961 -9.56586 -9.35664 -9.25543 -9.01171 -8.76031 -8.33449 -6.49973 -5.73950 -3.25585 0.77920 1.34522 2.51385 2.81056 2.91164 3.37230 3.45486 3.46858 3.57611 4.17006 4.51642 4.54867 4.71250 4.93620 4.94633 4.99041 5.01971 5.13009 5.30355 5.40650 5.45679 5.53679 5.55189 5.58556 5.77355 5.84178 5.88871 5.90097 5.98407 6.04835 6.09201 6.19940 6.23188 6.41159 6.44191 6.50148 6.58485 6.59839 6.66876 6.81262 6.99387 7.06404 7.10730 7.12124 7.22934 7.32553 7.42511 7.61191 7.76064 7.83151 7.86926 8.11590 8.55913 9.27763 9.90784 10.48383 11.31168 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002450 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.045090 B =11426.060305 C =12027.249758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.161 3.839 11 C -0.142 4.142 12 C -0.101 4.101 13 C -0.076 4.076 14 H 0.060 0.940 15 C -0.078 4.078 16 C -0.127 4.127 17 C 0.074 3.926 18 N -0.589 5.589 19 C 0.594 3.406 20 O -0.530 6.530 21 C -0.019 4.019 22 C -0.186 4.186 23 C -0.054 4.054 24 O 0.112 5.888 25 N -0.326 5.326 26 C 0.111 3.889 27 C -0.128 4.128 28 C -0.121 4.121 29 C 0.165 3.835 30 H 0.251 0.749 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.181 0.819 43 H 0.224 0.776 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.027 0.973 50 H 0.095 0.905 51 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -18.914 -9.238 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.032 3.968 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.095 4.095 14 H 0.079 0.921 15 C -0.097 4.097 16 C -0.164 4.164 17 C -0.048 4.048 18 N -0.322 5.322 19 C 0.379 3.621 20 O -0.406 6.406 21 C -0.177 4.177 22 C -0.209 4.209 23 C -0.135 4.135 24 O 0.041 5.959 25 N -0.031 5.031 26 C -0.010 4.010 27 C -0.166 4.166 28 C -0.159 4.159 29 C 0.042 3.958 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.198 0.802 43 H 0.241 0.759 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.115 0.885 49 H 0.045 0.955 50 H 0.113 0.887 51 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -9.936 -17.815 -9.186 22.372 hybrid contribution -0.025 0.414 0.217 0.468 sum -9.961 -17.401 -8.969 21.965 Atomic orbital electron populations 1.69889 1.05018 1.24759 1.55074 1.25199 0.95537 0.97939 1.00414 0.86251 0.79342 0.84240 0.77150 1.20467 1.21717 1.21827 1.19216 0.90286 0.83473 1.44526 0.91979 1.44084 1.20679 1.08306 1.58013 1.20359 0.96035 0.90174 0.90197 1.22851 0.96331 0.98138 1.00949 1.21497 0.94552 1.01637 0.96104 1.20588 0.93039 0.98454 0.97386 0.92127 1.21176 0.96902 0.96549 0.95038 1.22009 0.95756 0.98831 0.99852 1.22700 0.90027 1.03533 0.88572 1.48036 1.44837 1.13977 1.25321 1.17001 0.81222 0.80816 0.83062 1.90783 1.33759 1.79539 1.36520 1.23669 1.00401 0.96807 0.96853 1.22776 1.04715 0.92842 1.00530 1.26052 0.95629 0.96636 0.95209 1.84835 1.52801 1.14921 1.43313 1.73906 1.17446 1.05244 1.06526 1.21890 0.98356 0.90646 0.90148 1.22115 0.94191 1.01639 0.98684 1.21100 0.97537 0.98090 0.99174 1.20196 0.84113 0.98216 0.93273 0.93875 0.95570 0.95818 0.93379 0.94232 0.94514 0.91293 0.91358 0.91954 0.90060 0.85898 0.91314 0.80153 0.75922 0.91029 0.89056 0.91784 0.89494 0.88461 0.95475 0.88720 0.98541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 8.86 55.49 0.49 -23.99 16 2 C 0.01 0.18 5.29 -17.43 -0.09 0.09 16 3 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.59 9.60 -15.06 -0.14 -6.74 16 8 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 9 N -0.59 -14.45 2.59 -175.08 -0.45 -14.90 16 10 C 0.16 3.44 5.17 -4.66 -0.02 3.41 16 11 C -0.14 -2.69 6.41 -24.76 -0.16 -2.85 16 12 C -0.10 -1.86 5.09 -27.19 -0.14 -2.00 16 13 C -0.08 -1.33 1.49 -92.29 -0.14 -1.47 16 14 H 0.06 1.11 6.30 -51.93 -0.33 0.79 16 15 C -0.08 -1.13 1.67 -90.57 -0.15 -1.28 16 16 C -0.13 -1.63 5.14 -26.61 -0.14 -1.77 16 17 C 0.07 0.89 6.33 -3.71 -0.02 0.86 16 18 N -0.59 -7.69 2.97 -173.43 -0.51 -8.20 16 19 C 0.59 8.19 7.72 -12.11 -0.09 8.10 16 20 O -0.53 -8.53 16.39 5.37 0.09 -8.45 16 21 C -0.02 -0.21 6.95 -82.52 -0.57 -0.79 16 22 C -0.19 -1.49 11.00 -39.08 -0.43 -1.92 16 23 C -0.05 -0.28 12.28 29.69 0.36 0.08 16 24 O 0.11 0.90 11.18 17.24 0.19 1.10 16 25 N -0.33 -3.47 8.50 33.29 0.28 -3.18 16 26 C 0.11 1.41 6.45 -3.49 -0.02 1.39 16 27 C -0.13 -1.75 5.18 -26.39 -0.14 -1.88 16 28 C -0.12 -2.49 4.44 -30.19 -0.13 -2.62 16 29 C 0.17 3.85 5.23 -5.20 -0.03 3.82 16 30 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 32 H 0.02 0.48 6.90 -51.93 -0.36 0.12 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.60 5.60 -51.93 -0.29 0.31 16 36 H 0.07 1.53 6.83 -51.93 -0.35 1.18 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.03 6.08 -51.93 -0.32 0.72 16 40 H 0.12 1.44 3.75 -74.55 -0.28 1.16 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.22 0.05 8.06 -52.49 -0.42 -0.38 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.22 6.12 -51.93 -0.32 0.90 16 48 H 0.10 2.35 5.21 -51.93 -0.27 2.08 16 49 H 0.03 0.52 5.70 -51.92 -0.30 0.22 16 50 H 0.09 2.48 6.08 -51.93 -0.32 2.17 16 51 H 0.00 -0.08 8.13 -51.93 -0.42 -0.50 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -30.31 377.78 -8.98 -39.29 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.68 Total: 1.78 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.06 Total: -5.55 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.19 Total: -50.29 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.28 Total: -7.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.31 -8.98 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.058 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds