Wall clock time and date at job start Wed Apr 1 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48495 * 109.46791 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 299.99787 * 3 2 1 6 6 H 1.48496 * 109.46823 * 60.00083 * 3 2 1 7 7 C 1.38811 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99603 * 180.86931 * 7 2 1 9 9 N 1.36933 * 120.00508 * 0.86885 * 7 2 1 10 10 C 1.43434 * 120.54293 * 147.50822 * 9 7 2 11 11 C 1.54902 * 116.07832 * 271.54649 * 10 9 7 12 12 C 1.54844 * 110.14145 * 318.63609 * 11 10 9 13 13 C 1.50127 * 110.81164 * 321.13758 * 12 11 10 14 14 H 1.08999 * 110.37337 * 338.64008 * 13 12 11 15 15 C 1.53008 * 110.24560 * 216.65360 * 13 12 11 16 16 C 1.53044 * 109.45658 * 60.95777 * 15 13 12 17 17 C 1.53193 * 109.30622 * 181.38451 * 16 15 13 18 18 N 1.46925 * 108.77901 * 305.36080 * 17 16 15 19 19 C 1.34772 * 120.63420 * 233.58596 * 18 17 16 20 20 O 1.21492 * 120.00286 * 185.22323 * 19 18 17 21 21 C 1.48337 * 119.99941 * 5.22790 * 19 18 17 22 22 C 1.42268 * 126.94036 * 174.18056 * 21 19 18 23 23 C 1.35312 * 103.92157 * 179.97438 * 22 21 19 24 24 O 1.34017 * 106.67060 * 0.02562 * 23 22 21 25 25 N 1.20907 * 111.84446 * 359.97438 * 24 23 22 26 26 C 1.46922 * 118.73354 * 53.86738 * 18 17 16 27 27 C 1.53040 * 109.46005 * 181.02500 * 15 13 12 28 28 C 1.52524 * 105.41685 * 97.68235 * 13 12 11 29 29 C 1.46235 * 114.27926 * 270.58651 * 28 13 12 30 30 H 0.97002 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.09002 * 108.15456 * 33.25752 * 10 9 7 32 32 H 1.08993 * 108.16057 * 149.82455 * 10 9 7 33 33 H 1.08998 * 109.36048 * 78.84141 * 11 10 9 34 34 H 1.08995 * 109.35497 * 198.56700 * 11 10 9 35 35 H 1.08995 * 109.21115 * 200.78923 * 12 11 10 36 36 H 1.08998 * 109.21007 * 81.47669 * 12 11 10 37 37 H 1.08995 * 109.44938 * 300.99376 * 15 13 12 38 38 H 1.09002 * 109.49945 * 61.43853 * 16 15 13 39 39 H 1.08994 * 109.49983 * 301.33030 * 16 15 13 40 40 H 1.09006 * 109.58158 * 185.57387 * 17 16 15 41 41 H 1.09001 * 109.58933 * 65.15614 * 17 16 15 42 42 H 1.08006 * 128.03443 * 0.02562 * 22 21 19 43 43 H 1.07998 * 126.66466 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.59430 * 65.92270 * 26 18 17 45 45 H 1.09000 * 109.58730 * 186.35121 * 26 18 17 46 46 H 1.09003 * 109.49399 * 298.56555 * 27 15 13 47 47 H 1.08995 * 109.50021 * 58.66202 * 27 15 13 48 48 H 1.08997 * 108.52333 * 31.83432 * 28 13 12 49 49 H 1.09007 * 108.52356 * 149.50131 * 28 13 12 50 50 H 1.09003 * 109.84594 * 177.91722 * 29 28 13 51 51 H 1.08998 * 109.84699 * 298.84116 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0147 9 7 1.3256 -2.3880 -0.0169 10 6 1.8723 -3.5355 -0.6816 11 6 1.5304 -3.6783 -2.1857 12 6 0.0468 -3.3100 -2.4326 13 6 -0.8218 -3.8201 -1.3194 14 1 -0.3238 -4.6336 -0.7918 15 6 -2.1673 -4.2942 -1.8724 16 6 -1.9368 -5.4365 -2.8644 17 6 -3.2829 -5.8853 -3.4419 18 7 -4.1848 -6.2226 -2.3321 19 6 -4.7981 -7.4217 -2.2859 20 8 -5.6136 -7.6539 -1.4158 21 6 -4.4775 -8.4583 -3.2974 22 6 -4.9444 -9.8020 -3.3223 23 6 -4.3724 -10.3248 -4.4316 24 8 -3.6408 -9.3473 -4.9841 25 7 -3.7074 -8.3212 -4.3481 26 6 -4.4101 -5.2253 -1.2770 27 6 -3.0471 -4.7860 -0.7208 28 6 -1.0241 -2.6311 -0.3857 29 6 -0.0094 -2.5083 0.6601 30 1 -0.4850 0.8401 -0.0004 31 1 2.9571 -3.5012 -0.5815 32 1 1.5171 -4.4278 -0.1662 33 1 2.1693 -3.0128 -2.7662 34 1 1.7020 -4.7081 -2.4989 35 1 -0.2804 -3.7515 -3.3739 36 1 -0.0482 -2.2259 -2.4936 37 1 -2.6628 -3.4667 -2.3802 38 1 -1.4637 -6.2739 -2.3515 39 1 -1.2911 -5.0922 -3.6722 40 1 -3.1358 -6.7620 -4.0727 41 1 -3.7154 -5.0769 -4.0315 42 1 -5.6030 -10.2907 -2.6196 43 1 -4.4837 -11.3339 -4.8000 44 1 -4.9325 -4.3642 -1.6935 45 1 -5.0070 -5.6664 -0.4787 46 1 -2.5634 -5.6295 -0.2282 47 1 -3.1915 -3.9788 -0.0029 48 1 -1.0197 -1.7184 -0.9814 49 1 -1.9997 -2.7273 0.0911 50 1 -0.2018 -1.6186 1.2598 51 1 -0.0245 -3.3934 1.2961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075448203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:41 Heat of formation + Delta-G solvation = 49.811530 kcal Electronic energy + Delta-G solvation = -32025.217774 eV Core-core repulsion = 27928.530984 eV Total energy + Delta-G solvation = -4096.686790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.11978 -41.44330 -40.14583 -38.25744 -35.93738 -35.10531 -34.03428 -33.03257 -32.72928 -32.04602 -31.76455 -28.35616 -27.16753 -25.73165 -25.18765 -24.42155 -23.77442 -23.60076 -21.90107 -21.39333 -20.51275 -20.20177 -18.85669 -18.76406 -18.56187 -18.22288 -17.10069 -16.86977 -16.45210 -16.05645 -15.65256 -15.57845 -15.42099 -15.10433 -14.92336 -14.84036 -14.55614 -14.38204 -14.29122 -14.08768 -13.70851 -13.36532 -13.16046 -13.09793 -12.96447 -12.76262 -12.66589 -12.41803 -12.22932 -12.04824 -11.89329 -11.73040 -11.70447 -11.58630 -11.51781 -11.29615 -11.08526 -10.97970 -10.93283 -10.71832 -10.52851 -10.31732 -9.81505 -8.45381 -7.78505 -5.32131 0.04478 0.80191 1.44941 1.47925 1.56175 1.64406 1.98170 2.29087 2.52944 2.79123 3.34706 3.48151 3.67782 3.74017 3.77840 3.89130 3.94580 4.07719 4.21099 4.25017 4.28336 4.35933 4.45959 4.50505 4.56213 4.64050 4.68384 4.74102 4.77309 4.84968 4.89411 4.95506 4.99420 5.00074 5.04056 5.07224 5.12841 5.15526 5.29086 5.38450 5.41525 5.47122 5.51386 5.64692 5.67714 5.71275 5.78480 5.95760 6.13286 6.31743 6.52777 6.75332 7.11406 7.24978 7.94663 8.48279 9.23656 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002450 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.045090 B =11426.060305 C =12027.249758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.055 0.945 9 N -0.604 5.604 10 C 0.156 3.844 11 C -0.135 4.135 12 C -0.093 4.093 13 C -0.062 4.062 14 H 0.059 0.941 15 C -0.071 4.071 16 C -0.118 4.118 17 C 0.077 3.923 18 N -0.592 5.592 19 C 0.588 3.412 20 O -0.564 6.564 21 C -0.050 4.050 22 C -0.205 4.205 23 C -0.018 4.018 24 O 0.119 5.881 25 N -0.344 5.344 26 C 0.114 3.886 27 C -0.121 4.121 28 C -0.109 4.109 29 C 0.168 3.832 30 H 0.246 0.754 31 H 0.020 0.980 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.190 0.810 43 H 0.279 0.721 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.060 0.940 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -21.431 -11.163 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.233 4.233 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.072 0.928 9 N -0.326 5.326 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.131 4.131 13 C -0.080 4.080 14 H 0.077 0.923 15 C -0.089 4.089 16 C -0.156 4.156 17 C -0.045 4.045 18 N -0.324 5.324 19 C 0.375 3.625 20 O -0.442 6.442 21 C -0.207 4.207 22 C -0.228 4.228 23 C -0.098 4.098 24 O 0.046 5.954 25 N -0.047 5.047 26 C -0.008 4.008 27 C -0.159 4.159 28 C -0.148 4.148 29 C 0.045 3.955 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.207 0.793 43 H 0.294 0.706 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.079 0.921 51 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -10.068 -20.325 -11.117 25.260 hybrid contribution 0.043 1.098 0.818 1.369 sum -10.025 -19.227 -10.299 24.005 Atomic orbital electron populations 1.70068 1.05768 1.24806 1.55317 1.25797 0.96361 1.00454 1.00656 0.85354 0.78497 0.80842 0.76612 1.19912 1.21971 1.21962 1.19363 0.90212 0.84769 1.44772 0.92758 1.44219 1.20923 1.08509 1.58996 1.20480 0.95607 0.89364 0.91778 1.22765 0.96255 0.99823 0.98737 1.21391 0.94668 0.99123 0.97873 1.20426 0.94585 0.96782 0.96232 0.92300 1.21077 0.95099 0.97144 0.95603 1.21918 0.96456 0.97778 0.99407 1.22749 0.89230 1.04206 0.88296 1.48129 1.44853 1.13948 1.25431 1.17381 0.80643 0.81234 0.83195 1.90749 1.35205 1.80207 1.38031 1.23576 1.02299 0.97610 0.97214 1.23042 1.05848 0.91770 1.02171 1.26952 0.92402 0.97320 0.93170 1.84791 1.52709 1.15028 1.42840 1.73812 1.17821 1.06565 1.06543 1.21821 0.97672 0.91000 0.90263 1.22006 0.94530 1.01110 0.98223 1.20868 0.97224 0.98121 0.98541 1.20093 0.84657 0.96952 0.93817 0.94415 0.96121 0.94541 0.94639 0.90895 0.91689 0.95419 0.91678 0.92285 0.89294 0.85074 0.90571 0.79255 0.70606 0.90063 0.89665 0.92322 0.90101 0.91856 0.94466 0.92123 0.97484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.13 8.86 21.65 0.19 -50.93 16 2 C -0.04 -2.00 5.29 84.86 0.45 -1.55 16 3 Si 0.96 44.91 29.55 68.60 2.03 46.93 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 7 C -0.26 -14.32 9.60 84.03 0.81 -13.51 16 8 H 0.05 3.01 7.83 -2.91 -0.02 2.99 16 9 N -0.60 -30.09 2.59 -707.83 -1.84 -31.93 16 10 C 0.16 6.55 5.17 87.60 0.45 7.00 16 11 C -0.14 -4.94 6.41 31.87 0.20 -4.74 16 12 C -0.09 -3.37 5.09 30.30 0.15 -3.21 16 13 C -0.06 -2.11 1.49 -11.87 -0.02 -2.13 16 14 H 0.06 2.07 6.30 -2.39 -0.02 2.05 16 15 C -0.07 -1.96 1.67 -10.76 -0.02 -1.97 16 16 C -0.12 -2.79 5.14 30.67 0.16 -2.63 16 17 C 0.08 1.72 6.33 86.36 0.55 2.27 16 18 N -0.59 -14.97 2.97 -820.92 -2.43 -17.40 16 19 C 0.59 16.02 7.72 86.93 0.67 16.69 16 20 O -0.56 -18.30 16.39 -3.69 -0.06 -18.36 16 21 C -0.05 -1.07 6.95 42.96 0.30 -0.78 16 22 C -0.21 -2.82 11.00 22.60 0.25 -2.57 16 23 C -0.02 -0.11 12.28 67.14 0.82 0.71 16 24 O 0.12 1.54 11.18 71.87 0.80 2.34 16 25 N -0.34 -6.59 8.50 -49.51 -0.42 -7.01 16 26 C 0.11 2.86 6.45 86.51 0.56 3.41 16 27 C -0.12 -3.21 5.18 30.82 0.16 -3.05 16 28 C -0.11 -4.58 4.44 28.35 0.13 -4.45 16 29 C 0.17 8.00 5.23 83.58 0.44 8.44 16 30 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 31 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 32 H 0.04 1.43 6.90 -2.39 -0.02 1.41 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 1.97 5.60 -2.39 -0.01 1.96 16 36 H 0.03 1.23 6.83 -2.39 -0.02 1.21 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.99 6.08 -2.39 -0.01 1.98 16 40 H 0.13 2.83 3.75 -47.06 -0.18 2.66 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.28 -1.59 8.06 -2.91 -0.02 -1.61 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 2.26 7.03 -2.39 -0.02 2.24 16 46 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 2.25 6.12 -2.39 -0.01 2.23 16 48 H 0.06 3.16 5.21 -2.39 -0.01 3.14 16 49 H 0.04 1.45 5.70 -2.38 -0.01 1.44 16 50 H 0.06 3.30 6.08 -2.39 -0.01 3.29 16 51 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 Total: -1.00 -68.56 377.78 5.11 -63.45 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.78 Total: 14.99 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.06 Total: -2.08 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.50 Total: -107.27 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.74 Total: -16.02 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.56 5.11 -63.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.265 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds