Wall clock time and date at job start Wed Apr 1 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48496 * 109.47258 * 239.99850 * 3 2 1 5 5 H 1.48499 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46806 * 119.99693 * 3 2 1 7 7 C 1.38812 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00206 * 196.70316 * 7 2 1 9 9 N 1.36932 * 119.99899 * 16.71056 * 7 2 1 10 10 C 1.44586 * 118.64322 * 204.92365 * 9 7 2 11 11 C 1.54871 * 109.59561 * 270.72104 * 10 9 7 12 12 C 1.47093 * 110.32310 * 288.73063 * 11 10 9 13 13 C 1.52568 * 114.32355 * 62.80496 * 12 11 10 14 14 H 1.09001 * 109.48965 * 34.95205 * 13 12 11 15 15 C 1.53006 * 109.48849 * 154.99720 * 13 12 11 16 16 C 1.53046 * 109.45719 * 304.84985 * 15 13 12 17 17 C 1.53192 * 109.30927 * 178.61708 * 16 15 13 18 18 N 1.46927 * 108.77900 * 54.63196 * 17 16 15 19 19 C 1.34773 * 120.63012 * 126.41674 * 18 17 16 20 20 O 1.21499 * 120.00091 * 353.42372 * 19 18 17 21 21 C 1.48330 * 120.00126 * 173.43034 * 19 18 17 22 22 C 1.42270 * 126.94021 * 172.84886 * 21 19 18 23 23 C 1.35314 * 103.92252 * 179.90892 * 22 21 19 24 24 O 1.34017 * 106.66799 * 0.34772 * 23 22 21 25 25 N 1.20904 * 111.84692 * 359.76764 * 24 23 22 26 26 C 1.46930 * 118.73852 * 306.39169 * 18 17 16 27 27 C 1.53042 * 109.45988 * 184.78051 * 15 13 12 28 28 C 1.50880 * 109.35980 * 274.98747 * 13 12 11 29 29 C 1.47602 * 118.64609 * 24.89506 * 9 7 2 30 30 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.45249 * 150.68132 * 10 9 7 32 32 H 1.08996 * 109.44715 * 30.75520 * 10 9 7 33 33 H 1.09000 * 109.32395 * 168.47239 * 11 10 9 34 34 H 1.09005 * 109.32830 * 48.99576 * 11 10 9 35 35 H 1.08997 * 108.50954 * 301.55283 * 12 11 10 36 36 H 1.08999 * 108.38935 * 183.96872 * 12 11 10 37 37 H 1.09000 * 109.45685 * 64.80637 * 15 13 12 38 38 H 1.08997 * 109.49562 * 298.56218 * 16 15 13 39 39 H 1.08993 * 109.49689 * 58.66534 * 16 15 13 40 40 H 1.09001 * 109.58498 * 294.84434 * 17 16 15 41 41 H 1.08998 * 109.58307 * 174.42346 * 17 16 15 42 42 H 1.07998 * 128.03858 * 0.02985 * 22 21 19 43 43 H 1.07997 * 126.66650 * 180.08917 * 23 22 21 44 44 H 1.08999 * 109.58808 * 293.82267 * 26 18 17 45 45 H 1.08998 * 109.70226 * 173.46608 * 26 18 17 46 46 H 1.08994 * 109.49871 * 301.33698 * 27 15 13 47 47 H 1.09001 * 109.49782 * 61.43599 * 27 15 13 48 48 H 1.09000 * 109.36314 * 212.08209 * 28 13 12 49 49 H 1.09006 * 109.36599 * 331.69089 * 28 13 12 50 50 H 1.08996 * 108.95228 * 258.55780 * 29 9 7 51 51 H 1.09004 * 108.94854 * 17.27493 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0561 -1.2220 0.2683 9 7 1.3690 -2.3628 -0.3420 10 6 1.8867 -3.6150 0.1624 11 6 2.9368 -4.1789 -0.8265 12 6 2.2787 -4.6602 -2.0508 13 6 1.5571 -3.5753 -2.8445 14 1 2.1108 -2.6396 -2.7679 15 6 1.4632 -3.9942 -4.3131 16 6 2.8641 -4.3055 -4.8449 17 6 2.7627 -4.7577 -6.3051 18 7 2.0414 -3.7307 -7.0692 19 6 2.5791 -3.2017 -8.1861 20 8 3.7173 -3.4834 -8.5047 21 6 1.7815 -2.2756 -9.0264 22 6 2.2400 -1.5273 -10.1462 23 6 1.1425 -0.8510 -10.5574 24 8 0.1482 -1.1895 -9.7251 25 7 0.5141 -1.9770 -8.8838 26 6 0.7226 -3.2918 -6.5929 27 6 0.8469 -2.8560 -5.1295 28 6 0.1688 -3.3860 -2.2848 29 6 0.1773 -2.2840 -1.2094 30 1 -0.4850 0.8401 -0.0004 31 1 1.0698 -4.3285 0.2703 32 1 2.3543 -3.4497 1.1330 33 1 3.4695 -5.0046 -0.3548 34 1 3.6481 -3.3940 -1.0838 35 1 1.5549 -5.4273 -1.7759 36 1 3.0347 -5.1133 -2.6922 37 1 0.8371 -4.8824 -4.3980 38 1 3.4837 -3.4108 -4.7834 39 1 3.3115 -5.1003 -4.2482 40 1 2.2199 -5.7014 -6.3585 41 1 3.7632 -4.8854 -6.7183 42 1 3.2328 -1.5058 -10.5708 43 1 1.0809 -0.1676 -11.3914 44 1 0.0135 -4.1159 -6.6697 45 1 0.3747 -2.4529 -7.1957 46 1 -0.1413 -2.6191 -4.7353 47 1 1.4855 -1.9750 -5.0653 48 1 -0.5094 -3.1010 -3.0891 49 1 -0.1727 -4.3212 -1.8410 50 1 -0.7163 -2.3835 -0.5932 51 1 0.1611 -1.3113 -1.7011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075448204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:46 Heat of formation + Delta-G solvation = 58.389584 kcal Electronic energy + Delta-G solvation = -32027.390519 eV Core-core repulsion = 27931.075702 eV Total energy + Delta-G solvation = -4096.314818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.41337 -40.39597 -38.79342 -36.93553 -34.66794 -34.23147 -32.77394 -32.32344 -31.32374 -30.61448 -30.39057 -26.90186 -25.48922 -24.85304 -23.63621 -23.44243 -22.78302 -22.41547 -20.88162 -19.66901 -19.47082 -19.04918 -18.08461 -18.00073 -17.33991 -16.51050 -16.13832 -15.47548 -15.04171 -14.79627 -14.69505 -14.17804 -14.08420 -13.94812 -13.78082 -13.67483 -13.39959 -13.25465 -13.07417 -12.80258 -12.47771 -12.18053 -12.02669 -11.67822 -11.36664 -11.24264 -11.11092 -10.92189 -10.83463 -10.76513 -10.68476 -10.53146 -10.36248 -10.26728 -10.10468 -10.04270 -9.82951 -9.72388 -9.58416 -9.53546 -9.27110 -8.78999 -8.32312 -6.61155 -5.72915 -3.13778 0.81418 1.37866 2.53140 2.83999 2.91316 3.40101 3.45914 3.47597 3.60792 4.19312 4.54440 4.60570 4.73837 4.86173 4.87697 4.92782 5.02642 5.10026 5.23991 5.34971 5.42598 5.47479 5.52204 5.52556 5.59530 5.68021 5.79239 5.81361 5.87465 5.92827 6.05122 6.13261 6.18073 6.23131 6.36517 6.39983 6.40559 6.48755 6.58820 6.71688 6.78386 6.83424 6.89778 7.00059 7.06469 7.10496 7.24572 7.52219 7.62571 7.76664 7.87047 7.87727 8.52242 9.30323 9.98680 10.43003 11.34336 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003100 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.862826 B = 9030.456050 C =10335.291575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.159 3.841 11 C -0.145 4.145 12 C -0.102 4.102 13 C -0.067 4.067 14 H 0.081 0.919 15 C -0.081 4.081 16 C -0.133 4.133 17 C 0.112 3.888 18 N -0.591 5.591 19 C 0.596 3.404 20 O -0.530 6.530 21 C -0.022 4.022 22 C -0.186 4.186 23 C -0.055 4.055 24 O 0.115 5.885 25 N -0.326 5.326 26 C 0.087 3.913 27 C -0.130 4.130 28 C -0.138 4.138 29 C 0.180 3.820 30 H 0.252 0.748 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.181 0.819 43 H 0.224 0.776 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.020 0.980 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -6.995 -19.953 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.030 3.970 11 C -0.186 4.186 12 C -0.139 4.139 13 C -0.086 4.086 14 H 0.100 0.900 15 C -0.100 4.100 16 C -0.170 4.170 17 C -0.009 4.009 18 N -0.324 5.324 19 C 0.381 3.619 20 O -0.405 6.405 21 C -0.181 4.181 22 C -0.209 4.209 23 C -0.136 4.136 24 O 0.043 5.957 25 N -0.029 5.029 26 C -0.036 4.036 27 C -0.168 4.168 28 C -0.177 4.177 29 C 0.055 3.945 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.198 0.802 43 H 0.241 0.759 44 H 0.087 0.913 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.038 0.962 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.211 -7.443 -19.203 20.596 hybrid contribution 1.131 1.102 -0.439 1.639 sum 1.342 -6.341 -19.642 20.684 Atomic orbital electron populations 1.70075 1.05121 1.25318 1.54463 1.24947 0.95207 0.98135 1.01194 0.86455 0.78979 0.83804 0.78072 1.21210 1.21696 1.20982 1.19172 0.92695 0.85310 1.41219 0.91884 1.43634 1.31776 1.01387 1.54308 1.20663 0.93898 0.88244 0.94149 1.21472 1.00034 0.99516 0.97553 1.20494 0.98905 0.97654 0.96844 1.20549 0.97417 0.99618 0.91007 0.90022 1.21240 0.95263 0.97701 0.95778 1.22127 0.98369 1.02586 0.93956 1.21765 0.97926 0.89448 0.91807 1.48005 1.20354 1.39822 1.24189 1.16984 0.85135 0.79418 0.80337 1.90781 1.16907 1.61053 1.71800 1.23615 0.91393 1.03202 0.99851 1.22775 1.02063 0.98935 0.97084 1.26054 0.86550 1.02599 0.98409 1.84832 1.36421 1.44179 1.30298 1.74111 1.14070 1.06033 1.08727 1.22465 0.82749 1.01584 0.96764 1.22036 1.02667 0.99009 0.93048 1.22182 0.95596 1.00506 0.99427 1.20980 0.88144 0.95986 0.89369 0.93768 0.95202 0.94061 0.93849 0.92355 0.93711 0.93421 0.91649 0.91337 0.89779 0.91224 0.89027 0.80181 0.75917 0.91269 0.86894 0.89738 0.91446 0.92764 0.93932 0.96181 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 10.97 55.49 0.61 -25.49 16 2 C 0.00 0.09 4.85 -17.43 -0.08 0.01 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.90 9.45 -15.06 -0.14 -7.05 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.43 2.28 -172.07 -0.39 -14.82 16 10 C 0.16 3.32 5.66 -4.08 -0.02 3.30 16 11 C -0.15 -2.57 5.74 -28.58 -0.16 -2.74 16 12 C -0.10 -1.61 4.56 -29.79 -0.14 -1.74 16 13 C -0.07 -1.12 1.40 -91.90 -0.13 -1.25 16 14 H 0.08 1.66 7.48 -51.93 -0.39 1.27 16 15 C -0.08 -1.09 1.69 -90.57 -0.15 -1.25 16 16 C -0.13 -1.67 5.02 -26.61 -0.13 -1.80 16 17 C 0.11 1.33 6.44 -3.71 -0.02 1.31 16 18 N -0.59 -7.66 2.97 -173.70 -0.52 -8.18 16 19 C 0.60 8.37 7.71 -12.11 -0.09 8.28 16 20 O -0.53 -8.62 16.38 5.37 0.09 -8.53 16 21 C -0.02 -0.26 6.88 -82.53 -0.57 -0.83 16 22 C -0.19 -1.61 11.00 -39.08 -0.43 -2.04 16 23 C -0.06 -0.33 12.28 29.69 0.36 0.04 16 24 O 0.11 1.02 11.18 17.24 0.19 1.21 16 25 N -0.33 -3.67 8.65 33.29 0.29 -3.38 16 26 C 0.09 1.05 6.13 -3.71 -0.02 1.03 16 27 C -0.13 -1.75 5.18 -26.61 -0.14 -1.89 16 28 C -0.14 -2.51 5.12 -27.29 -0.14 -2.65 16 29 C 0.18 4.22 4.68 -2.93 -0.01 4.21 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.04 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.69 7.36 -51.93 -0.38 0.31 16 36 H 0.05 0.67 5.18 -51.93 -0.27 0.40 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.98 5.79 -51.93 -0.30 0.68 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 42 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.22 0.21 8.06 -52.49 -0.42 -0.21 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.11 1.40 4.20 -56.92 -0.24 1.16 16 46 H 0.08 1.15 6.20 -51.93 -0.32 0.83 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.90 5.78 -51.93 -0.30 0.60 16 49 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 50 H 0.02 0.52 8.05 -51.93 -0.42 0.10 16 51 H 0.07 1.95 6.24 -51.93 -0.32 1.63 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -31.83 383.06 -8.89 -40.72 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.87 Total: 0.93 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.03 Total: -5.07 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.01 Total: -51.87 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.28 Total: -7.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.83 -8.89 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.109 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds