Wall clock time and date at job start Wed Apr 1 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48496 * 109.47258 * 239.99850 * 3 2 1 5 5 H 1.48499 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46806 * 119.99693 * 3 2 1 7 7 C 1.38812 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00206 * 196.70316 * 7 2 1 9 9 N 1.36932 * 119.99899 * 16.71056 * 7 2 1 10 10 C 1.44586 * 118.64322 * 204.92365 * 9 7 2 11 11 C 1.54871 * 109.59561 * 270.72104 * 10 9 7 12 12 C 1.47093 * 110.32310 * 288.73063 * 11 10 9 13 13 C 1.52568 * 114.32355 * 62.80496 * 12 11 10 14 14 H 1.09001 * 109.48965 * 34.95205 * 13 12 11 15 15 C 1.53006 * 109.48849 * 154.99720 * 13 12 11 16 16 C 1.53046 * 109.45719 * 304.84985 * 15 13 12 17 17 C 1.53192 * 109.30927 * 178.61708 * 16 15 13 18 18 N 1.46927 * 108.77900 * 54.63196 * 17 16 15 19 19 C 1.34773 * 120.63012 * 126.41674 * 18 17 16 20 20 O 1.21499 * 120.00091 * 353.42372 * 19 18 17 21 21 C 1.48330 * 120.00126 * 173.43034 * 19 18 17 22 22 C 1.42270 * 126.94021 * 172.84886 * 21 19 18 23 23 C 1.35314 * 103.92252 * 179.90892 * 22 21 19 24 24 O 1.34017 * 106.66799 * 0.34772 * 23 22 21 25 25 N 1.20904 * 111.84692 * 359.76764 * 24 23 22 26 26 C 1.46930 * 118.73852 * 306.39169 * 18 17 16 27 27 C 1.53042 * 109.45988 * 184.78051 * 15 13 12 28 28 C 1.50880 * 109.35980 * 274.98747 * 13 12 11 29 29 C 1.47602 * 118.64609 * 24.89506 * 9 7 2 30 30 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.45249 * 150.68132 * 10 9 7 32 32 H 1.08996 * 109.44715 * 30.75520 * 10 9 7 33 33 H 1.09000 * 109.32395 * 168.47239 * 11 10 9 34 34 H 1.09005 * 109.32830 * 48.99576 * 11 10 9 35 35 H 1.08997 * 108.50954 * 301.55283 * 12 11 10 36 36 H 1.08999 * 108.38935 * 183.96872 * 12 11 10 37 37 H 1.09000 * 109.45685 * 64.80637 * 15 13 12 38 38 H 1.08997 * 109.49562 * 298.56218 * 16 15 13 39 39 H 1.08993 * 109.49689 * 58.66534 * 16 15 13 40 40 H 1.09001 * 109.58498 * 294.84434 * 17 16 15 41 41 H 1.08998 * 109.58307 * 174.42346 * 17 16 15 42 42 H 1.07998 * 128.03858 * 0.02985 * 22 21 19 43 43 H 1.07997 * 126.66650 * 180.08917 * 23 22 21 44 44 H 1.08999 * 109.58808 * 293.82267 * 26 18 17 45 45 H 1.08998 * 109.70226 * 173.46608 * 26 18 17 46 46 H 1.08994 * 109.49871 * 301.33698 * 27 15 13 47 47 H 1.09001 * 109.49782 * 61.43599 * 27 15 13 48 48 H 1.09000 * 109.36314 * 212.08209 * 28 13 12 49 49 H 1.09006 * 109.36599 * 331.69089 * 28 13 12 50 50 H 1.08996 * 108.95228 * 258.55780 * 29 9 7 51 51 H 1.09004 * 108.94854 * 17.27493 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0561 -1.2220 0.2683 9 7 1.3690 -2.3628 -0.3420 10 6 1.8867 -3.6150 0.1624 11 6 2.9368 -4.1789 -0.8265 12 6 2.2787 -4.6602 -2.0508 13 6 1.5571 -3.5753 -2.8445 14 1 2.1108 -2.6396 -2.7679 15 6 1.4632 -3.9942 -4.3131 16 6 2.8641 -4.3055 -4.8449 17 6 2.7627 -4.7577 -6.3051 18 7 2.0414 -3.7307 -7.0692 19 6 2.5791 -3.2017 -8.1861 20 8 3.7173 -3.4834 -8.5047 21 6 1.7815 -2.2756 -9.0264 22 6 2.2400 -1.5273 -10.1462 23 6 1.1425 -0.8510 -10.5574 24 8 0.1482 -1.1895 -9.7251 25 7 0.5141 -1.9770 -8.8838 26 6 0.7226 -3.2918 -6.5929 27 6 0.8469 -2.8560 -5.1295 28 6 0.1688 -3.3860 -2.2848 29 6 0.1773 -2.2840 -1.2094 30 1 -0.4850 0.8401 -0.0004 31 1 1.0698 -4.3285 0.2703 32 1 2.3543 -3.4497 1.1330 33 1 3.4695 -5.0046 -0.3548 34 1 3.6481 -3.3940 -1.0838 35 1 1.5549 -5.4273 -1.7759 36 1 3.0347 -5.1133 -2.6922 37 1 0.8371 -4.8824 -4.3980 38 1 3.4837 -3.4108 -4.7834 39 1 3.3115 -5.1003 -4.2482 40 1 2.2199 -5.7014 -6.3585 41 1 3.7632 -4.8854 -6.7183 42 1 3.2328 -1.5058 -10.5708 43 1 1.0809 -0.1676 -11.3914 44 1 0.0135 -4.1159 -6.6697 45 1 0.3747 -2.4529 -7.1957 46 1 -0.1413 -2.6191 -4.7353 47 1 1.4855 -1.9750 -5.0653 48 1 -0.5094 -3.1010 -3.0891 49 1 -0.1727 -4.3212 -1.8410 50 1 -0.7163 -2.3835 -0.5932 51 1 0.1611 -1.3113 -1.7011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075448204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:44 Heat of formation + Delta-G solvation = 40.778118 kcal Electronic energy + Delta-G solvation = -32028.154210 eV Core-core repulsion = 27931.075702 eV Total energy + Delta-G solvation = -4097.078508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.14168 -41.46136 -40.12233 -38.28340 -36.09427 -35.12861 -34.28501 -33.18286 -32.69145 -31.97200 -31.85073 -28.36769 -26.97541 -26.05873 -25.16649 -24.43360 -23.79229 -23.66002 -21.90944 -21.10017 -20.66125 -20.49241 -18.84387 -18.82506 -18.51158 -18.21250 -17.14275 -16.90939 -16.58662 -16.09232 -15.80152 -15.58837 -15.34959 -15.18254 -15.06174 -14.84860 -14.48210 -14.35220 -14.24407 -14.14738 -13.88220 -13.59079 -13.26507 -13.14376 -12.92726 -12.73055 -12.56749 -12.48294 -12.25765 -12.21423 -12.01913 -11.88166 -11.61271 -11.56778 -11.51678 -11.35837 -11.30252 -11.24038 -10.91497 -10.72377 -10.65210 -10.36809 -9.82252 -8.63211 -7.84403 -5.27191 0.02530 0.76932 1.42134 1.44230 1.50602 1.64016 1.95624 2.28267 2.50671 2.77901 3.28013 3.46700 3.65145 3.72226 3.78337 3.84853 3.92859 4.03759 4.10011 4.20109 4.24003 4.37047 4.40637 4.49290 4.54716 4.59425 4.61090 4.62263 4.77652 4.80964 4.83987 4.88894 4.96594 4.97405 4.99302 5.06298 5.10366 5.18405 5.27156 5.29849 5.33694 5.40613 5.45950 5.54253 5.59056 5.65331 5.75853 5.83168 5.87226 6.09716 6.41874 6.73566 7.07571 7.20764 8.00525 8.37248 9.20098 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003100 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.862826 B = 9030.456050 C =10335.291575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.059 0.941 9 N -0.603 5.603 10 C 0.151 3.849 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.059 4.059 14 H 0.038 0.962 15 C -0.071 4.071 16 C -0.124 4.124 17 C 0.113 3.887 18 N -0.594 5.594 19 C 0.588 3.412 20 O -0.562 6.562 21 C -0.054 4.054 22 C -0.207 4.207 23 C -0.021 4.021 24 O 0.119 5.881 25 N -0.345 5.345 26 C 0.094 3.906 27 C -0.126 4.126 28 C -0.125 4.125 29 C 0.191 3.809 30 H 0.247 0.753 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.190 0.810 43 H 0.278 0.722 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.038 0.962 48 H 0.069 0.931 49 H 0.057 0.943 50 H -0.013 1.013 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 -8.344 -21.970 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.784 3.216 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.025 3.975 11 C -0.172 4.172 12 C -0.140 4.140 13 C -0.078 4.078 14 H 0.057 0.943 15 C -0.090 4.090 16 C -0.162 4.162 17 C -0.009 4.009 18 N -0.325 5.325 19 C 0.375 3.625 20 O -0.441 6.441 21 C -0.211 4.211 22 C -0.229 4.229 23 C -0.101 4.101 24 O 0.045 5.955 25 N -0.047 5.047 26 C -0.029 4.029 27 C -0.164 4.164 28 C -0.163 4.163 29 C 0.066 3.934 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.293 0.707 44 H 0.107 0.893 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.005 0.995 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.243 -8.832 -21.193 22.961 hybrid contribution 1.110 1.563 0.195 1.927 sum 1.354 -7.270 -20.998 22.262 Atomic orbital electron populations 1.70228 1.06317 1.25463 1.55996 1.25607 0.95941 1.00918 1.01801 0.85521 0.77753 0.80229 0.78080 1.21112 1.21857 1.20220 1.19431 0.92715 0.86665 1.40264 0.92284 1.43839 1.31803 1.01954 1.54928 1.20866 0.94974 0.87118 0.94570 1.21314 0.98633 0.99566 0.97716 1.20492 0.99834 0.97443 0.96191 1.20403 0.95704 0.98250 0.93439 0.94347 1.21148 0.96306 0.98255 0.93267 1.22045 0.97304 1.02003 0.94863 1.21831 0.98047 0.90158 0.90825 1.48139 1.20565 1.39765 1.24065 1.17351 0.85012 0.79449 0.80666 1.90744 1.18231 1.62367 1.72742 1.23617 0.92008 1.04290 1.01139 1.23055 1.03573 0.99533 0.96777 1.26957 0.84412 1.01045 0.97707 1.84789 1.37122 1.43377 1.30216 1.74074 1.13850 1.06974 1.09821 1.22437 0.82746 1.02325 0.95342 1.21971 1.01894 0.98152 0.94397 1.22016 0.97284 0.98910 0.98108 1.20739 0.86580 0.96320 0.89786 0.94353 0.94103 0.95227 0.90893 0.94691 0.92081 0.90759 0.89215 0.93898 0.88075 0.88659 0.89771 0.79228 0.70659 0.89343 0.87052 0.89866 0.94286 0.91251 0.92387 0.99495 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 10.97 21.65 0.24 -55.75 16 2 C -0.05 -2.71 4.85 84.86 0.41 -2.30 16 3 Si 0.96 46.24 29.59 68.60 2.03 48.27 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.26 -14.58 9.45 84.03 0.79 -13.78 16 8 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 9 N -0.60 -30.30 2.28 -698.30 -1.59 -31.89 16 10 C 0.15 6.29 5.66 87.38 0.49 6.79 16 11 C -0.13 -4.47 5.74 29.40 0.17 -4.31 16 12 C -0.10 -2.96 4.56 28.61 0.13 -2.83 16 13 C -0.06 -1.91 1.40 -11.62 -0.02 -1.93 16 14 H 0.04 1.59 7.48 -2.39 -0.02 1.58 16 15 C -0.07 -1.79 1.69 -10.76 -0.02 -1.81 16 16 C -0.12 -2.93 5.02 30.67 0.15 -2.78 16 17 C 0.11 2.49 6.44 86.36 0.56 3.05 16 18 N -0.59 -14.97 2.97 -821.76 -2.44 -17.41 16 19 C 0.59 16.60 7.71 86.93 0.67 17.27 16 20 O -0.56 -18.62 16.38 -3.71 -0.06 -18.68 16 21 C -0.05 -1.26 6.88 42.96 0.30 -0.96 16 22 C -0.21 -3.29 11.00 22.60 0.25 -3.04 16 23 C -0.02 -0.19 12.28 67.14 0.82 0.64 16 24 O 0.12 1.86 11.18 71.88 0.80 2.66 16 25 N -0.34 -7.44 8.65 -49.51 -0.43 -7.87 16 26 C 0.09 2.17 6.13 86.36 0.53 2.70 16 27 C -0.13 -3.36 5.18 30.67 0.16 -3.20 16 28 C -0.12 -4.44 5.12 30.23 0.15 -4.28 16 29 C 0.19 9.26 4.68 86.50 0.40 9.66 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 32 H 0.03 1.27 7.99 -2.39 -0.02 1.25 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 1.63 7.36 -2.39 -0.02 1.61 16 36 H 0.07 1.79 5.18 -2.39 -0.01 1.78 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 2.03 5.79 -2.39 -0.01 2.02 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.03 7.00 -2.39 -0.02 2.01 16 42 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.28 -0.90 8.06 -2.91 -0.02 -0.93 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.11 2.72 4.20 -12.24 -0.05 2.66 16 46 H 0.08 2.22 6.20 -2.39 -0.01 2.21 16 47 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 2.25 5.78 -2.39 -0.01 2.24 16 49 H 0.06 1.91 7.32 -2.38 -0.02 1.89 16 50 H -0.01 -0.70 8.05 -2.39 -0.02 -0.72 16 51 H 0.04 2.08 6.24 -2.39 -0.01 2.06 16 Total: -1.00 -74.02 383.06 5.41 -68.61 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.90 Total: 13.16 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.96 Total: -1.11 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.22 Total: -112.91 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.74 Total: -16.02 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.02 5.41 -68.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.389 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds