Wall clock time and date at job start Wed Apr 1 2020 04:57:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31609 * 1
3 3 Si 1.86800 * 120.00106 * 2 1
4 4 H 1.48501 * 109.47162 * 270.00412 * 3 2 1
5 5 H 1.48507 * 109.46930 * 29.99712 * 3 2 1
6 6 H 1.48502 * 109.47503 * 149.99822 * 3 2 1
7 7 C 1.38813 * 120.00567 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00500 * 187.57093 * 7 2 1
9 9 N 1.36937 * 119.99832 * 7.56689 * 7 2 1
10 10 C 1.44580 * 118.64714 * 212.67062 * 9 7 2
11 11 C 1.54863 * 109.60079 * 270.72742 * 10 9 7
12 12 C 1.47098 * 110.31934 * 288.73198 * 11 10 9
13 13 C 1.52565 * 114.32629 * 62.80198 * 12 11 10
14 14 H 1.09005 * 109.48679 * 34.95511 * 13 12 11
15 15 C 1.53005 * 109.48770 * 154.99751 * 13 12 11
16 16 C 1.53041 * 109.45908 * 300.45738 * 15 13 12
17 17 C 1.53193 * 109.31177 * 178.61408 * 16 15 13
18 18 N 1.46928 * 108.77620 * 54.63652 * 17 16 15
19 19 C 1.34771 * 120.63066 * 126.36259 * 18 17 16
20 20 O 1.21689 * 120.00019 * 176.20197 * 19 18 17
21 21 C 1.46722 * 120.00215 * 356.21245 * 19 18 17
22 22 C 1.36341 * 126.64245 * 186.59730 * 21 19 18
23 23 N 1.33695 * 107.45237 * 179.83817 * 22 21 19
24 24 C 1.30627 * 108.99113 * 0.43385 * 23 22 21
25 25 O 1.33664 * 109.15770 * 359.72822 * 24 23 22
26 26 C 1.46925 * 118.73649 * 306.39140 * 18 17 16
27 27 C 1.53037 * 109.45763 * 180.39034 * 15 13 12
28 28 C 1.50878 * 109.36035 * 274.98505 * 13 12 11
29 29 C 1.47609 * 118.64050 * 32.64768 * 9 7 2
30 30 H 0.96999 * 120.00624 * 0.02562 * 1 2 3
31 31 H 1.09000 * 109.44922 * 150.68132 * 10 9 7
32 32 H 1.09004 * 109.44469 * 30.76454 * 10 9 7
33 33 H 1.08994 * 109.32702 * 168.47316 * 11 10 9
34 34 H 1.09001 * 109.32752 * 48.99079 * 11 10 9
35 35 H 1.08998 * 108.50961 * 301.54844 * 12 11 10
36 36 H 1.08999 * 108.38503 * 183.96958 * 12 11 10
37 37 H 1.08993 * 109.45607 * 60.41643 * 15 13 12
38 38 H 1.09004 * 109.49881 * 298.56793 * 16 15 13
39 39 H 1.09007 * 109.49735 * 58.66370 * 16 15 13
40 40 H 1.08999 * 109.58699 * 294.84940 * 17 16 15
41 41 H 1.09002 * 109.70210 * 174.49100 * 17 16 15
42 42 H 1.08002 * 126.27522 * 0.02562 * 22 21 19
43 43 H 1.08000 * 125.42095 * 179.71052 * 24 23 22
44 44 H 1.08995 * 109.59095 * 293.81974 * 26 18 17
45 45 H 1.09000 * 109.70188 * 173.46441 * 26 18 17
46 46 H 1.09001 * 109.50157 * 301.33722 * 27 15 13
47 47 H 1.09006 * 109.49836 * 61.43356 * 27 15 13
48 48 H 1.08996 * 109.36588 * 212.07744 * 28 13 12
49 49 H 1.08999 * 109.36672 * 331.69973 * 28 13 12
50 50 H 1.08994 * 108.94717 * 258.55380 * 29 9 7
51 51 H 1.08997 * 108.94847 * 17.27387 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4975 2.0465 -1.4001
5 1 1.4475 2.6527 0.7000
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2021 -0.0005
8 1 3.0832 -1.2062 0.1227
9 7 1.3346 -2.3828 -0.1572
10 6 1.8355 -3.5622 0.5125
11 6 2.8484 -4.2900 -0.4054
12 6 2.1505 -4.9255 -1.5335
13 6 1.4351 -3.9480 -2.4611
14 1 2.0119 -3.0258 -2.5320
15 6 1.2967 -4.5718 -3.8513
16 6 2.6862 -4.8927 -4.4068
17 6 2.5422 -5.5486 -5.7837
18 7 1.7365 -4.6711 -6.6436
19 6 2.1966 -4.2796 -7.8484
20 8 1.4921 -3.6098 -8.5804
21 6 3.5468 -4.6611 -8.2774
22 6 4.1927 -4.2401 -9.4020
23 7 5.3974 -4.8198 -9.4133
24 6 5.5135 -5.5795 -8.3570
25 8 4.3901 -5.5038 -7.6366
26 6 0.4200 -4.2280 -6.1649
27 6 0.5877 -3.5869 -4.7837
28 6 0.0653 -3.6438 -1.9066
29 6 0.1246 -2.3988 -1.0025
30 1 -0.4851 0.8400 -0.0004
31 1 1.0052 -4.2311 0.7391
32 1 2.3297 -3.2708 1.4393
33 1 3.3732 -5.0527 0.1699
34 1 3.5711 -3.5693 -0.7880
35 1 1.4160 -5.6259 -1.1358
36 1 2.8804 -5.4859 -2.1177
37 1 0.7131 -5.4896 -3.7809
38 1 3.2620 -3.9720 -4.5007
39 1 3.1995 -5.5760 -3.7302
40 1 2.0459 -6.5134 -5.6788
41 1 3.5275 -5.6909 -6.2277
42 1 3.8037 -3.5603 -10.1456
43 1 6.3792 -6.1744 -8.1059
44 1 -0.2494 -5.0849 -6.0911
45 1 0.0035 -3.4976 -6.8586
46 1 -0.3925 -3.3406 -4.3755
47 1 1.1833 -2.6784 -4.8741
48 1 -0.6252 -3.4601 -2.7298
49 1 -0.2868 -4.4959 -1.3252
50 1 -0.7559 -2.3851 -0.3603
51 1 0.1190 -1.5071 -1.6294
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001075455868.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:05
Heat of formation + Delta-G solvation = 18.074030 kcal
Electronic energy + Delta-G solvation = -32023.079314 eV
Core-core repulsion = 27925.016283 eV
Total energy + Delta-G solvation = -4098.063031 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-43.83702 -40.37139 -38.82392 -37.04348 -35.41301 -34.43566 -32.85776 -31.62358
-31.25293 -30.44182 -30.20522 -26.73654 -25.55684 -24.23972 -24.05148 -23.17904
-22.69923 -22.47856 -21.10026 -19.76277 -19.59163 -19.06394 -17.99999 -17.39636
-17.20059 -16.53393 -16.28856 -15.39948 -15.11976 -14.88477 -14.61976 -14.39474
-14.37436 -14.06508 -13.92887 -13.73594 -13.41387 -13.21902 -12.91279 -12.83601
-12.52076 -12.23604 -11.89587 -11.72605 -11.49330 -11.38752 -11.18833 -11.14362
-10.93045 -10.84774 -10.73524 -10.60715 -10.46666 -10.25458 -10.08903 -9.87758
-9.78477 -9.63716 -9.54946 -9.50752 -9.30354 -8.84838 -8.39114 -6.51683
-5.74764 -3.25822 0.48321 2.01328 2.09367 2.71118 2.84555 3.37393
3.44610 3.45216 3.74776 4.20893 4.51047 4.56286 4.67108 4.77251
4.82139 4.98267 5.02708 5.11671 5.16396 5.31990 5.40429 5.44459
5.49489 5.57354 5.59382 5.71341 5.72107 5.77961 5.84323 5.94274
5.99499 6.08191 6.12445 6.18058 6.30191 6.34373 6.36872 6.43573
6.56850 6.67494 6.74406 6.80898 6.87383 6.95713 6.98188 7.03827
7.18141 7.20533 7.50144 7.70432 7.77154 7.85308 8.55056 9.30270
9.95242 10.43138 11.31792
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012773 B = 0.002818 C = 0.002705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.522278 B = 9934.933564 C =10348.867649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.009 3.991
3 Si 0.899 3.101
4 H -0.288 1.288
5 H -0.291 1.291
6 H -0.279 1.279
7 C -0.258 4.258
8 H 0.060 0.940
9 N -0.589 5.589
10 C 0.159 3.841
11 C -0.146 4.146
12 C -0.099 4.099
13 C -0.067 4.067
14 H 0.081 0.919
15 C -0.081 4.081
16 C -0.131 4.131
17 C 0.090 3.910
18 N -0.595 5.595
19 C 0.604 3.396
20 O -0.521 6.521
21 C -0.102 4.102
22 C 0.051 3.949
23 N -0.494 5.494
24 C 0.190 3.810
25 O -0.184 6.184
26 C 0.113 3.887
27 C -0.133 4.133
28 C -0.141 4.141
29 C 0.182 3.818
30 H 0.253 0.747
31 H 0.029 0.971
32 H 0.041 0.959
33 H 0.043 0.957
34 H 0.057 0.943
35 H 0.044 0.956
36 H 0.044 0.956
37 H 0.065 0.935
38 H 0.067 0.933
39 H 0.082 0.918
40 H 0.072 0.928
41 H 0.105 0.895
42 H 0.197 0.803
43 H 0.255 0.745
44 H 0.071 0.929
45 H 0.094 0.906
46 H 0.087 0.913
47 H 0.070 0.930
48 H 0.055 0.945
49 H 0.042 0.958
50 H 0.022 0.978
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.189 -15.462 -13.569 21.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.190 4.190
3 Si 0.729 3.271
4 H -0.215 1.215
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.388 4.388
8 H 0.078 0.922
9 N -0.310 5.310
10 C 0.031 3.969
11 C -0.186 4.186
12 C -0.136 4.136
13 C -0.086 4.086
14 H 0.100 0.900
15 C -0.100 4.100
16 C -0.169 4.169
17 C -0.032 4.032
18 N -0.327 5.327
19 C 0.391 3.609
20 O -0.399 6.399
21 C -0.157 4.157
22 C -0.092 4.092
23 N -0.222 5.222
24 C -0.034 4.034
25 O -0.071 6.071
26 C -0.009 4.009
27 C -0.170 4.170
28 C -0.180 4.180
29 C 0.057 3.943
30 H 0.063 0.937
31 H 0.047 0.953
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.076 0.924
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.101 0.899
40 H 0.090 0.910
41 H 0.122 0.878
42 H 0.214 0.786
43 H 0.270 0.730
44 H 0.089 0.911
45 H 0.112 0.888
46 H 0.105 0.895
47 H 0.088 0.912
48 H 0.074 0.926
49 H 0.061 0.939
50 H 0.040 0.960
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 6.104 -14.935 -14.314 21.569
hybrid contribution 0.153 0.728 0.590 0.950
sum 6.257 -14.207 -13.724 20.720
Atomic orbital electron populations
1.70001 1.05200 1.25298 1.54389 1.25196 0.95353 0.98244 1.00200
0.86347 0.79133 0.83932 0.77654 1.21492 1.21704 1.20465 1.19153
0.90412 0.84093 1.45137 0.92189 1.43566 1.29724 1.04900 1.52849
1.20672 0.94113 0.88903 0.93227 1.21471 0.99946 0.99189 0.97991
1.20453 0.98753 0.97732 0.96706 1.20548 0.97630 0.99018 0.91377
0.90038 1.21235 0.94946 0.98315 0.95491 1.22083 0.98543 1.01606
0.94633 1.22394 0.96458 0.92808 0.91516 1.48050 1.19579 1.48582
1.16470 1.16532 0.82600 0.79952 0.81838 1.90892 1.55644 1.39751
1.53578 1.23274 0.94301 1.00970 0.97179 1.23613 0.89220 0.99576
0.96769 1.70477 1.19244 1.10750 1.21682 1.28583 0.90161 0.97920
0.86757 1.84671 1.24377 1.52095 1.45921 1.21790 0.82462 1.00016
0.96595 1.22094 1.02567 0.99101 0.93280 1.22232 0.95679 1.00667
0.99387 1.20955 0.88254 0.93685 0.91388 0.93720 0.95265 0.94025
0.93874 0.92442 0.93690 0.93724 0.91611 0.91387 0.89932 0.91002
0.87778 0.78650 0.72977 0.91109 0.88810 0.89466 0.91159 0.92611
0.93926 0.95984 0.91271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.89 10.96 55.49 0.61 -25.28 16
2 C 0.01 0.24 5.04 -17.43 -0.09 0.16 16
3 Si 0.90 21.65 29.56 -169.99 -5.02 16.63 16
4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.26 -6.90 9.39 -15.06 -0.14 -7.04 16
8 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16
9 N -0.59 -14.15 2.25 -172.07 -0.39 -14.54 16
10 C 0.16 3.26 5.65 -4.09 -0.02 3.23 16
11 C -0.15 -2.48 5.74 -28.58 -0.16 -2.64 16
12 C -0.10 -1.48 4.57 -29.79 -0.14 -1.61 16
13 C -0.07 -1.05 1.40 -91.91 -0.13 -1.18 16
14 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16
15 C -0.08 -1.00 1.71 -90.58 -0.15 -1.15 16
16 C -0.13 -1.42 5.11 -26.61 -0.14 -1.56 16
17 C 0.09 0.86 6.32 -3.71 -0.02 0.84 16
18 N -0.60 -6.84 2.97 -174.29 -0.52 -7.36 16
19 C 0.60 7.75 7.67 -12.84 -0.10 7.65 16
20 O -0.52 -8.03 16.33 5.20 0.08 -7.94 16
21 C -0.10 -1.12 6.88 -36.84 -0.25 -1.38 16
22 C 0.05 0.53 11.67 -17.42 -0.20 0.33 16
23 N -0.49 -4.87 11.26 -14.66 -0.17 -5.03 16
24 C 0.19 1.30 13.21 52.25 0.69 1.99 16
25 O -0.18 -1.60 7.27 4.41 0.03 -1.56 16
26 C 0.11 1.28 6.42 -3.71 -0.02 1.25 16
27 C -0.13 -1.66 5.13 -26.61 -0.14 -1.79 16
28 C -0.14 -2.46 5.11 -27.28 -0.14 -2.60 16
29 C 0.18 4.19 4.63 -2.92 -0.01 4.17 16
30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
31 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16
32 H 0.04 0.88 7.99 -51.93 -0.41 0.47 16
33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
35 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16
36 H 0.04 0.57 5.42 -51.93 -0.28 0.29 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
39 H 0.08 0.83 5.92 -51.93 -0.31 0.52 16
40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.11 0.93 3.79 -55.03 -0.21 0.72 16
42 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16
43 H 0.25 0.39 8.06 -52.49 -0.42 -0.04 16
44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
45 H 0.09 1.15 7.03 -51.93 -0.37 0.78 16
46 H 0.09 1.10 5.97 -51.93 -0.31 0.79 16
47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
48 H 0.06 0.89 5.50 -51.93 -0.29 0.60 16
49 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16
50 H 0.02 0.56 7.97 -51.93 -0.41 0.15 16
51 H 0.07 1.79 6.56 -51.93 -0.34 1.45 16
LS Contribution 383.20 15.07 5.77 5.77
Total: -1.00 -31.80 383.20 -8.62 -40.42
By element:
Atomic # 1 Polarization: 8.07 SS G_CDS: -7.85 Total: 0.22 kcal
Atomic # 6 Polarization: -0.16 SS G_CDS: -1.17 Total: -1.33 kcal
Atomic # 7 Polarization: -51.74 SS G_CDS: -0.46 Total: -52.21 kcal
Atomic # 8 Polarization: -9.62 SS G_CDS: 0.12 Total: -9.51 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -31.80 -8.62 -40.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075455868.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.496 kcal
(2) G-P(sol) polarization free energy of solvation -31.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.074 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds