Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47162 * 270.00412 * 3 2 1 5 5 H 1.48507 * 109.46930 * 29.99712 * 3 2 1 6 6 H 1.48502 * 109.47503 * 149.99822 * 3 2 1 7 7 C 1.38813 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00500 * 187.57093 * 7 2 1 9 9 N 1.36937 * 119.99832 * 7.56689 * 7 2 1 10 10 C 1.44580 * 118.64714 * 212.67062 * 9 7 2 11 11 C 1.54863 * 109.60079 * 270.72742 * 10 9 7 12 12 C 1.47098 * 110.31934 * 288.73198 * 11 10 9 13 13 C 1.52565 * 114.32629 * 62.80198 * 12 11 10 14 14 H 1.09005 * 109.48679 * 34.95511 * 13 12 11 15 15 C 1.53005 * 109.48770 * 154.99751 * 13 12 11 16 16 C 1.53041 * 109.45908 * 300.45738 * 15 13 12 17 17 C 1.53193 * 109.31177 * 178.61408 * 16 15 13 18 18 N 1.46928 * 108.77620 * 54.63652 * 17 16 15 19 19 C 1.34771 * 120.63066 * 126.36259 * 18 17 16 20 20 O 1.21689 * 120.00019 * 176.20197 * 19 18 17 21 21 C 1.46722 * 120.00215 * 356.21245 * 19 18 17 22 22 C 1.36341 * 126.64245 * 186.59730 * 21 19 18 23 23 N 1.33695 * 107.45237 * 179.83817 * 22 21 19 24 24 C 1.30627 * 108.99113 * 0.43385 * 23 22 21 25 25 O 1.33664 * 109.15770 * 359.72822 * 24 23 22 26 26 C 1.46925 * 118.73649 * 306.39140 * 18 17 16 27 27 C 1.53037 * 109.45763 * 180.39034 * 15 13 12 28 28 C 1.50878 * 109.36035 * 274.98505 * 13 12 11 29 29 C 1.47609 * 118.64050 * 32.64768 * 9 7 2 30 30 H 0.96999 * 120.00624 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.44922 * 150.68132 * 10 9 7 32 32 H 1.09004 * 109.44469 * 30.76454 * 10 9 7 33 33 H 1.08994 * 109.32702 * 168.47316 * 11 10 9 34 34 H 1.09001 * 109.32752 * 48.99079 * 11 10 9 35 35 H 1.08998 * 108.50961 * 301.54844 * 12 11 10 36 36 H 1.08999 * 108.38503 * 183.96958 * 12 11 10 37 37 H 1.08993 * 109.45607 * 60.41643 * 15 13 12 38 38 H 1.09004 * 109.49881 * 298.56793 * 16 15 13 39 39 H 1.09007 * 109.49735 * 58.66370 * 16 15 13 40 40 H 1.08999 * 109.58699 * 294.84940 * 17 16 15 41 41 H 1.09002 * 109.70210 * 174.49100 * 17 16 15 42 42 H 1.08002 * 126.27522 * 0.02562 * 22 21 19 43 43 H 1.08000 * 125.42095 * 179.71052 * 24 23 22 44 44 H 1.08995 * 109.59095 * 293.81974 * 26 18 17 45 45 H 1.09000 * 109.70188 * 173.46441 * 26 18 17 46 46 H 1.09001 * 109.50157 * 301.33722 * 27 15 13 47 47 H 1.09006 * 109.49836 * 61.43356 * 27 15 13 48 48 H 1.08996 * 109.36588 * 212.07744 * 28 13 12 49 49 H 1.08999 * 109.36672 * 331.69973 * 28 13 12 50 50 H 1.08994 * 108.94717 * 258.55380 * 29 9 7 51 51 H 1.08997 * 108.94847 * 17.27387 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0832 -1.2062 0.1227 9 7 1.3346 -2.3828 -0.1572 10 6 1.8355 -3.5622 0.5125 11 6 2.8484 -4.2900 -0.4054 12 6 2.1505 -4.9255 -1.5335 13 6 1.4351 -3.9480 -2.4611 14 1 2.0119 -3.0258 -2.5320 15 6 1.2967 -4.5718 -3.8513 16 6 2.6862 -4.8927 -4.4068 17 6 2.5422 -5.5486 -5.7837 18 7 1.7365 -4.6711 -6.6436 19 6 2.1966 -4.2796 -7.8484 20 8 1.4921 -3.6098 -8.5804 21 6 3.5468 -4.6611 -8.2774 22 6 4.1927 -4.2401 -9.4020 23 7 5.3974 -4.8198 -9.4133 24 6 5.5135 -5.5795 -8.3570 25 8 4.3901 -5.5038 -7.6366 26 6 0.4200 -4.2280 -6.1649 27 6 0.5877 -3.5869 -4.7837 28 6 0.0653 -3.6438 -1.9066 29 6 0.1246 -2.3988 -1.0025 30 1 -0.4851 0.8400 -0.0004 31 1 1.0052 -4.2311 0.7391 32 1 2.3297 -3.2708 1.4393 33 1 3.3732 -5.0527 0.1699 34 1 3.5711 -3.5693 -0.7880 35 1 1.4160 -5.6259 -1.1358 36 1 2.8804 -5.4859 -2.1177 37 1 0.7131 -5.4896 -3.7809 38 1 3.2620 -3.9720 -4.5007 39 1 3.1995 -5.5760 -3.7302 40 1 2.0459 -6.5134 -5.6788 41 1 3.5275 -5.6909 -6.2277 42 1 3.8037 -3.5603 -10.1456 43 1 6.3792 -6.1744 -8.1059 44 1 -0.2494 -5.0849 -6.0911 45 1 0.0035 -3.4976 -6.8586 46 1 -0.3925 -3.3406 -4.3755 47 1 1.1833 -2.6784 -4.8741 48 1 -0.6252 -3.4601 -2.7298 49 1 -0.2868 -4.4959 -1.3252 50 1 -0.7559 -2.3851 -0.3603 51 1 0.1190 -1.5071 -1.6294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075455868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = 18.074030 kcal Electronic energy + Delta-G solvation = -32023.079314 eV Core-core repulsion = 27925.016283 eV Total energy + Delta-G solvation = -4098.063031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.83702 -40.37139 -38.82392 -37.04348 -35.41301 -34.43566 -32.85776 -31.62358 -31.25293 -30.44182 -30.20522 -26.73654 -25.55684 -24.23972 -24.05148 -23.17904 -22.69923 -22.47856 -21.10026 -19.76277 -19.59163 -19.06394 -17.99999 -17.39636 -17.20059 -16.53393 -16.28856 -15.39948 -15.11976 -14.88477 -14.61976 -14.39474 -14.37436 -14.06508 -13.92887 -13.73594 -13.41387 -13.21902 -12.91279 -12.83601 -12.52076 -12.23604 -11.89587 -11.72605 -11.49330 -11.38752 -11.18833 -11.14362 -10.93045 -10.84774 -10.73524 -10.60715 -10.46666 -10.25458 -10.08903 -9.87758 -9.78477 -9.63716 -9.54946 -9.50752 -9.30354 -8.84838 -8.39114 -6.51683 -5.74764 -3.25822 0.48321 2.01328 2.09367 2.71118 2.84555 3.37393 3.44610 3.45216 3.74776 4.20893 4.51047 4.56286 4.67108 4.77251 4.82139 4.98267 5.02708 5.11671 5.16396 5.31990 5.40429 5.44459 5.49489 5.57354 5.59382 5.71341 5.72107 5.77961 5.84323 5.94274 5.99499 6.08191 6.12445 6.18058 6.30191 6.34373 6.36872 6.43573 6.56850 6.67494 6.74406 6.80898 6.87383 6.95713 6.98188 7.03827 7.18141 7.20533 7.50144 7.70432 7.77154 7.85308 8.55056 9.30270 9.95242 10.43138 11.31792 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002818 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.522278 B = 9934.933564 C =10348.867649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.009 3.991 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.159 3.841 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.067 4.067 14 H 0.081 0.919 15 C -0.081 4.081 16 C -0.131 4.131 17 C 0.090 3.910 18 N -0.595 5.595 19 C 0.604 3.396 20 O -0.521 6.521 21 C -0.102 4.102 22 C 0.051 3.949 23 N -0.494 5.494 24 C 0.190 3.810 25 O -0.184 6.184 26 C 0.113 3.887 27 C -0.133 4.133 28 C -0.141 4.141 29 C 0.182 3.818 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.197 0.803 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.042 0.958 50 H 0.022 0.978 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -15.462 -13.569 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.310 5.310 10 C 0.031 3.969 11 C -0.186 4.186 12 C -0.136 4.136 13 C -0.086 4.086 14 H 0.100 0.900 15 C -0.100 4.100 16 C -0.169 4.169 17 C -0.032 4.032 18 N -0.327 5.327 19 C 0.391 3.609 20 O -0.399 6.399 21 C -0.157 4.157 22 C -0.092 4.092 23 N -0.222 5.222 24 C -0.034 4.034 25 O -0.071 6.071 26 C -0.009 4.009 27 C -0.170 4.170 28 C -0.180 4.180 29 C 0.057 3.943 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.214 0.786 43 H 0.270 0.730 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.040 0.960 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.104 -14.935 -14.314 21.569 hybrid contribution 0.153 0.728 0.590 0.950 sum 6.257 -14.207 -13.724 20.720 Atomic orbital electron populations 1.70001 1.05200 1.25298 1.54389 1.25196 0.95353 0.98244 1.00200 0.86347 0.79133 0.83932 0.77654 1.21492 1.21704 1.20465 1.19153 0.90412 0.84093 1.45137 0.92189 1.43566 1.29724 1.04900 1.52849 1.20672 0.94113 0.88903 0.93227 1.21471 0.99946 0.99189 0.97991 1.20453 0.98753 0.97732 0.96706 1.20548 0.97630 0.99018 0.91377 0.90038 1.21235 0.94946 0.98315 0.95491 1.22083 0.98543 1.01606 0.94633 1.22394 0.96458 0.92808 0.91516 1.48050 1.19579 1.48582 1.16470 1.16532 0.82600 0.79952 0.81838 1.90892 1.55644 1.39751 1.53578 1.23274 0.94301 1.00970 0.97179 1.23613 0.89220 0.99576 0.96769 1.70477 1.19244 1.10750 1.21682 1.28583 0.90161 0.97920 0.86757 1.84671 1.24377 1.52095 1.45921 1.21790 0.82462 1.00016 0.96595 1.22094 1.02567 0.99101 0.93280 1.22232 0.95679 1.00667 0.99387 1.20955 0.88254 0.93685 0.91388 0.93720 0.95265 0.94025 0.93874 0.92442 0.93690 0.93724 0.91611 0.91387 0.89932 0.91002 0.87778 0.78650 0.72977 0.91109 0.88810 0.89466 0.91159 0.92611 0.93926 0.95984 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 10.96 55.49 0.61 -25.28 16 2 C 0.01 0.24 5.04 -17.43 -0.09 0.16 16 3 Si 0.90 21.65 29.56 -169.99 -5.02 16.63 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.26 -6.90 9.39 -15.06 -0.14 -7.04 16 8 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 9 N -0.59 -14.15 2.25 -172.07 -0.39 -14.54 16 10 C 0.16 3.26 5.65 -4.09 -0.02 3.23 16 11 C -0.15 -2.48 5.74 -28.58 -0.16 -2.64 16 12 C -0.10 -1.48 4.57 -29.79 -0.14 -1.61 16 13 C -0.07 -1.05 1.40 -91.91 -0.13 -1.18 16 14 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 15 C -0.08 -1.00 1.71 -90.58 -0.15 -1.15 16 16 C -0.13 -1.42 5.11 -26.61 -0.14 -1.56 16 17 C 0.09 0.86 6.32 -3.71 -0.02 0.84 16 18 N -0.60 -6.84 2.97 -174.29 -0.52 -7.36 16 19 C 0.60 7.75 7.67 -12.84 -0.10 7.65 16 20 O -0.52 -8.03 16.33 5.20 0.08 -7.94 16 21 C -0.10 -1.12 6.88 -36.84 -0.25 -1.38 16 22 C 0.05 0.53 11.67 -17.42 -0.20 0.33 16 23 N -0.49 -4.87 11.26 -14.66 -0.17 -5.03 16 24 C 0.19 1.30 13.21 52.25 0.69 1.99 16 25 O -0.18 -1.60 7.27 4.41 0.03 -1.56 16 26 C 0.11 1.28 6.42 -3.71 -0.02 1.25 16 27 C -0.13 -1.66 5.13 -26.61 -0.14 -1.79 16 28 C -0.14 -2.46 5.11 -27.28 -0.14 -2.60 16 29 C 0.18 4.19 4.63 -2.92 -0.01 4.17 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.04 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 36 H 0.04 0.57 5.42 -51.93 -0.28 0.29 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.83 5.92 -51.93 -0.31 0.52 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.93 3.79 -55.03 -0.21 0.72 16 42 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.25 0.39 8.06 -52.49 -0.42 -0.04 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.15 7.03 -51.93 -0.37 0.78 16 46 H 0.09 1.10 5.97 -51.93 -0.31 0.79 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.06 0.89 5.50 -51.93 -0.29 0.60 16 49 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 50 H 0.02 0.56 7.97 -51.93 -0.41 0.15 16 51 H 0.07 1.79 6.56 -51.93 -0.34 1.45 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -31.80 383.20 -8.62 -40.42 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.85 Total: 0.22 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.17 Total: -1.33 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.46 Total: -52.21 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.12 Total: -9.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.80 -8.62 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075455868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.496 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds